mRNA_P-littoralis_Contig644.44.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig644.44.1
Unique NamemRNA_P-littoralis_Contig644.44.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.580e-40
Identity = 86/121 (71.07%), Postives = 95/121 (78.51%), Query Frame = 1 
Query:   25 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRATLKVKQKALKNARAATAAAGSXXXXGKGEAGASMYMELLAGEDVCSETGS 387
            S   YA+MYNKN RIGIYT QEREAII+R KRKRG RVWKKKIRYNCRK+LADKRLRVKGRF KMSPEQR  LK+KQK LK+ARAA AA+G+           SM MELL GE++ SETGS
Sbjct:  507 SRSEYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRTALKLKQKVLKSARAAAAASGAT----------SMDMELLGGEEMSSETGS 617
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.440e-37
Identity = 76/96 (79.17%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:   28 TIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRATLKVKQKALKNARAATAAAGSXXXXG 315
            T RYA+MYNKN RIGIYT QEREAII+R KRKRG RVWKKKIRYNCRK+LADKRLRVKGRF KMSPEQRA LK+KQKALK+ARAA  A+G+    G
Sbjct:  378 TTRYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKSARAAAVASGATRWEG 473
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: A0A835ZBX8_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.410e-23
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   34 RYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRATLKVKQKALKNARAAT 285
            +Y ++YN+N RIGIYT QEREAII+R K KR  RVW+KKIRYNCRK+LADKRLR+KGRF KM+P QRA L++++ A   A  A+
Sbjct:  290 KYTDVYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRYNCRKNLADKRLRIKGRFVKMTPAQRAALQLQRAAEDGANGAS 373
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: A0A835Z588_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.480e-23
Identity = 51/72 (70.83%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:   34 RYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRATLKV 249
            +YA++YN++ RIGIYT QEREAII+R + KR  RVW+KKIRYNCRK+LADKRLRVKGRF KM+P QRA L++
Sbjct:  280 KYADVYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRYNCRKNLADKRLRVKGRFVKMTPAQRAALQL 351
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: A0A7S1Z2T2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2T2_TRICV)

HSP 1 Score: 94.0 bits (232), Expect = 1.430e-20
Identity = 49/74 (66.22%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   25 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRATLK 246
            S  +Y E+YNKN RIGIYT  ER AII++   KR  RVW KKIRYNCRK+LAD+R+RVKGRF K S EQ A LK
Sbjct:  218 SLSKYKEVYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 291
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: A0A6S9FZK2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FZK2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.200e-20
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   25 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRATLKVKQK 258
            S  +Y E+YNKN RIG+YT  ER AII++   KR  RVW KKIRYNCRK+LAD+R+RVKGRF K S EQ A L  +QK
Sbjct:  284 SLSKYKEIYNKNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAALAAQQK 361
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: A0A6U6FD34_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FD34_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.410e-19
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   25 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRATLK 246
            S  +Y ++YNKN RIGIYT  ER AII++   KR  RVW KKIRYNCRK+LAD+R+RVKGRF K S EQ A LK
Sbjct:  312 SLAKYKQVYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 385
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: A0A7S2MN31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN31_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.940e-19
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   25 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRATLKVKQK 258
            S  +Y E+YN+N RIG+YT  ER AII++   KR  RVW KKIRYNCRK+LAD+R+RVKGRF K S EQ A +K  +K
Sbjct:  280 SLEKYKEIYNRNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAAVKAVKK 357
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: A0A7S2WG87_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WG87_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.190e-19
Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:   25 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQRAT 240
            S  +Y+++YNKN RIGIYT  ER AII+R   KR  RVW KKIRYNCRK LAD+R+RVKGRF K   EQ AT
Sbjct:  266 SLAKYSDIYNKNGRIGIYTPCERGAIIARFNEKRSRRVWNKKIRYNCRKSLADRRMRVKGRFVKRCVEQEAT 337
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BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Match: K8YW04_NANGC (CCT domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YW04_NANGC)

HSP 1 Score: 91.7 bits (226), Expect = 5.370e-19
Identity = 43/66 (65.15%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   34 RYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKDLADKRLRVKGRFGKMSPEQ 231
            +Y+++YNK+ RIGIYT  ER+AII+R + KR  RVWKKKIRY+CRK+LADKR+RVKGRF K+ P++
Sbjct:  447 KYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 512
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig644.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K330_9PHAE1.580e-4071.07CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LD77_ECTSI1.440e-3779.17CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZBX8_9STRA1.410e-2364.29CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z588_9STRA1.480e-2370.83CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1Z2T2_TRICV1.430e-2066.22Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6S9FZK2_9STRA3.200e-2062.82Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U6FD34_9STRA1.410e-1964.86Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2MN31_9STRA3.940e-1960.26Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2WG87_9STRA4.190e-1965.28Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
K8YW04_NANGC5.370e-1965.15CCT domain-containing protein (Fragment) n=2 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig644contigP-littoralis_Contig644:148595..150826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LD77
PFAMsCCT
Model size398
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.36e-38
EggNOG OGs2E1UC@1|root,2S94C@2759|Eukaryota
DescriptionCCT motif
Cds size396
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791344.9996984-CDS-P-littoralis_Contig644:148594..1486551680791344.9996984-CDS-P-littoralis_Contig644:148594..148655Pylaiella littoralis U1_48CDSP-littoralis_Contig644 148595..148655 -
1680791345.0139327-CDS-P-littoralis_Contig644:149490..1496701680791345.0139327-CDS-P-littoralis_Contig644:149490..149670Pylaiella littoralis U1_48CDSP-littoralis_Contig644 149491..149670 -
1680791345.0280302-CDS-P-littoralis_Contig644:150256..1503761680791345.0280302-CDS-P-littoralis_Contig644:150256..150376Pylaiella littoralis U1_48CDSP-littoralis_Contig644 150257..150376 -
1680791345.0377505-CDS-P-littoralis_Contig644:150791..1508261680791345.0377505-CDS-P-littoralis_Contig644:150791..150826Pylaiella littoralis U1_48CDSP-littoralis_Contig644 150792..150826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig644.44.1prot_P-littoralis_Contig644.44.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig644 148595..150826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig644.44.1

>prot_P-littoralis_Contig644.44.1 ID=prot_P-littoralis_Contig644.44.1|Name=mRNA_P-littoralis_Contig644.44.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
LHVSQHDGSTIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKK
IRYNCRKDLADKRLRVKGRFGKMSPEQRATLKVKQKALKNARAATAAAGS
GAASGKGEAGASMYMELLAGEDVCSETGSGET
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mRNA from alignment at P-littoralis_Contig644:148595..150826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig644.44.1 ID=mRNA_P-littoralis_Contig644.44.1|Name=mRNA_P-littoralis_Contig644.44.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2232bp|location=Sequence derived from alignment at P-littoralis_Contig644:148595..150826- (Pylaiella littoralis U1_48)
TTGCATGTTTCCCAGCATGACGGGTCCACCATCAGGTCAGTAAGAGTGTT
GGTTGAGGGGTACGACGGTTGCCCCCCCTCCCGCCCCCAAGCTTGTGTTG
AAGGTTCGGCCTAGCGTCTAATTTATTTGACTTCTTCAGTCTTTGGAAGA
CCTCTTTGTGAGTATGGCCGTACATTTTTCAAGTACGTGTGCCGTGACTG
TTAATTGTTATGCGGAAACGGTCGGAGGAGGGAAGCGCGGCGGTATTTAG
ATCTACTGTCGGGGGGGGTGTCGGGTGCCGTTAAGCCTTGTGGTCGCCTT
CCCTACAGCAGTAGTACTGCGATTGGCGTCGGTGAACACTTGATTGTTGA
TTTGGTGGTTTTTGTCGTTTTTTCACTCCTATCCTATCCTATTCTTCGCC
ATTGCGTACCGGTTCGTTTTGTCTCGTCGCATAAAAACACTTCATGTCAG
GTACGCCGAAATGTACAACAAGAACAGGCGCATCGGCATCTACACATGGC
AAGAGCGCGAGGCCATCATCTCCCGCTTGAAGCGAAAAAGGGGGCTCCGG
GTTTGGAAAAAGAAGATCAGGTATGAAGTTGGTGTCGTCACAACCTGCGA
GTAAGTTGGCGAGGCTTTCGGTCTTTGTAGCAAGCACGCATCACCAACCC
CCGCGGCCCTCGTTCCTCGTCTGTCGCTCTACCTCTTGCCCCTCTCTGTC
TCGTCTCTTTGTTGTCGACCCGCCCTCAATGATGCTTGATTCGTCCTGTT
GCTTTTACCCCATTGCCACCGTGCTACCATACATGCGTCCTCTCATCATT
GTATGCGGCCCGCTTGCTGTCAAACAACTCTACAATGTGCCCCGGTCACA
ATTTCACTTTTCGTGTTTTTGGCACTGTCTTTCCTTTGGGTTTCCCTTTT
CCCACGGATACGACTGCCGCAAGACTCCATATTTTTAATCTCGTCAACCG
TATATACTCGTGCTACATCCGTAGCTCTCAGTCTGGATCATGTTTTCATT
TTTGGTTTGGTCTGGCTCGGTTCATGTTACGAAATATTTCCAAGTATAAT
TTTCCCCCCCTTCTTTTCGTTTTTTTGTTTTTATTGCGTACTGGAACGTT
TTGTATTTCCCAACCCTTCAACCTTTTTCCTATGCTTCCGTTGTTGCCCT
GCTCAGATACAACTGCCGCAAAGACCTGGCCGACAAGCGTCTCCGCGTCA
AGGGTCGGTTTGGCAAGATGTCCCCGGAGCAACGAGCCACCCTCAAGGTC
AAGCAGAAGGCGCTTAAGAACGCGCGGGCCGCCACAGCTGCAGCTGGTAG
CGGAGCAGCTAGTGGCAAAGGCGAAGCCGGTGCCAGGTTAGCAAGGGCGT
ACAAGTAGGGGTTTCGTTTAGACCAAGCGCGGAAGGGGAAGCGGAAGACC
ACCGTGTATGTCAATTGTTGTGTGCGACGGGCACTTTTGGCCTGGCTGCT
GGAAGGAGACTTGCCGACGGGGCCTTGTTGCTCTTGTTGGGGAACTGTTG
TGTGTGGCGCCCGAACACACGTGTCATGGGAGACGAACTGACAGAACAGG
GGGGGCTGGGCTGTGTCACTATCGTGGTCGTTGACTGCTTCGAGCTCCTT
CCATGGAGCTCCTGTTATTGCTCGCGTGTGTTGCTCAACAAGAATCACCC
CCATTTCACGTTCTCTCCGTGCGCGGCGAAACGGGAGAAAGGGGCCGGCA
ATGGCAATCAGCGACCGCTTTGGTTTGTTCTTTTGGAATTTGCGGTATGT
AGTGTTCTTTTGTCTCTCATGTATGATGCGCCAAGACGTGTGGACGTGTG
TGGCTGCTGCCTCTCGTGTTGATTTGATGTCATGTGATATCACGTGCCAC
TTTGTGGAGTGGAAAACCTGACGACCTCATTCAATCTCTCCCTCTCTGCC
GCCGTTCGTGATAATTGTCTGCCGTTGTTGATTCTCACCTTATGTAGCTC
ACCACCAAAGTGTGATGTCATGTGGTATATCGTTTATCGAACAGAAAACC
TTACGACCTCAATAAGTGTCTCCCTCTCTACTGCCGTACTTGATAAGTGT
GATGTCATGTGGTATCATATGTCATTTTGTCGAGCAGAAATCCTGACGAC
CCCTCATCTATTTCTCCCTCTTTCTGCTGTATCCCCCCCGCGCGACCCGC
CGCTGAATCCATTAACAACAGCATGTATATGGAACTTCTCGCCGGCGAGG
ACGTATGCAGCGAAACAGGCAGCGGCGAAACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig644:148595..150826-

>mRNA_P-littoralis_Contig644.44.1 ID=mRNA_P-littoralis_Contig644.44.1|Name=mRNA_P-littoralis_Contig644.44.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig644:148595..150826- (Pylaiella littoralis U1_48)
TTGCATGTTTCCCAGCATGACGGGTCCACCATCAGGTACGCCGAAATGTA
CAACAAGAACAGGCGCATCGGCATCTACACATGGCAAGAGCGCGAGGCCA
TCATCTCCCGCTTGAAGCGAAAAAGGGGGCTCCGGGTTTGGAAAAAGAAG
ATCAGATACAACTGCCGCAAAGACCTGGCCGACAAGCGTCTCCGCGTCAA
GGGTCGGTTTGGCAAGATGTCCCCGGAGCAACGAGCCACCCTCAAGGTCA
AGCAGAAGGCGCTTAAGAACGCGCGGGCCGCCACAGCTGCAGCTGGTAGC
GGAGCAGCTAGTGGCAAAGGCGAAGCCGGTGCCAGCATGTATATGGAACT
TCTCGCCGGCGAGGACGTATGCAGCGAAACAGGCAGCGGCGAAACC
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