mRNA_P-littoralis_Contig644.38.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 262 bits (669), Expect = 1.030e-74 Identity = 127/184 (69.02%), Postives = 148/184 (80.43%), Query Frame = 2
Query: 563 VQPGIPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSD 1114
VQP +P+ +A +P+A+ W AAA++EM SL + KVYKLVPRS VPP +K I SKWV KRKAD ++K RVVAQGWNQV GLDCG+T+APVCR+QSVRMV I VE + Q+DV TAFLYADI+EEVFV QPPG+E KDKDGG +VM+L KSLYGLAQSPGNWF TIDPVL IGFV LKSD
Sbjct: 1146 VQPDVPRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSD 1329
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 262 bits (669), Expect = 1.040e-74 Identity = 127/184 (69.02%), Postives = 148/184 (80.43%), Query Frame = 2
Query: 563 VQPGIPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSD 1114
VQP +P+ +A +P+A+ W AAA++EM SL + KVYKLVPRS VPP +K I SKWV KRKAD ++K RVVAQGWNQV GLDCG+T+APVCR+QSVRMV I VE + Q+DV TAFLYADI+EEVFV QPPG+E KDKDGG +VM+L KSLYGLAQSPGNWF TIDPVL IGFV LKSD
Sbjct: 1311 VQPDVPRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSD 1494
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 256 bits (654), Expect = 1.720e-74 Identity = 123/184 (66.85%), Postives = 145/184 (78.80%), Query Frame = 2
Query: 566 QPGIPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSDT 1117
QP +P+ +A P+ W AAA++E+ SL E +VYKLVPR+ VPPG+K I SKWV KRKA S+K R+VAQGWNQV GLDCGNT+APVCR QS+RM+ IAV+ + E+ Q+DV TAFLYADI E VFV QPPG+E KDKDGG LVM+L+KSLYGLAQSP NWF TIDP L IGFVPLKSDT
Sbjct: 455 QPDVPRTIEEARAMPDGEQWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDT 638
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 258 bits (660), Expect = 6.750e-74 Identity = 125/184 (67.93%), Postives = 146/184 (79.35%), Query Frame = 2
Query: 563 VQPGIPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSD 1114
VQP +P+ +A +P+A+ W AAA++EM SL + KVYKLVPRS VPP +K I SKWV KRKAD ++K RVVAQGWNQV GLDCG+T+APVCR+QSVRMV I VE + Q+DV TAFLY DI EEVFV QPPG+E KDKDGG +VM+L +SLYGLAQSPGNWF TIDPVL IGFV LKSD
Sbjct: 927 VQPDVPRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSD 1110
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE) HSP 1 Score: 247 bits (630), Expect = 3.500e-73 Identity = 119/184 (64.67%), Postives = 144/184 (78.26%), Query Frame = 2
Query: 566 QPGIPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSDT 1117
QP +P+ +A P+ W AA++E+ SL E +V+KLVPR+ VPPG+K I SKWV KRKAD S+K R+V QGWNQV GLD G+TFAPVCRLQS+RM+ AV+ + E+ Q+DV TAFLYADI E VFV QPPG+E K+KDGG LVM+L+KSLYGLAQSP NWF TIDP+L IGFVPLKSDT
Sbjct: 46 QPDVPQTIEEARAMPDGEQWNTAAEREIASLKERQVHKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDT 229
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE) HSP 1 Score: 235 bits (599), Expect = 4.360e-70 Identity = 115/184 (62.50%), Postives = 138/184 (75.00%), Query Frame = 2
Query: 566 QPGIPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSDT 1117
QP P+ +A P+ W AAA++E+ SL E +VYKLVPR+ VPPG+K I SKWV KRKAD S+K R+VAQGWNQV GLDCG+T+APVCRLQS+RM+ I V+ + E+ Q+DV TAF YADI E VFV +PPG+E KDKDGG LVM+L+KSLYGLAQ NWF TIDP L VP KSDT
Sbjct: 46 QPDAPRTIEEARAMPDGEQWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFVERPPGFEVKDKDGGDLVMQLQKSLYGLAQIASNWFHTIDPFLVENISVPRKSDT 229
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 238 bits (607), Expect = 5.410e-69 Identity = 117/158 (74.05%), Postives = 130/158 (82.28%), Query Frame = 2
Query: 641 KEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSD 1114
+EM SL KVYKLVPRS VPPG+K I SKWV KRKAD ++K RVVAQGWNQV GLDCG+T+APVCR+QSVRMV I VE + Q+DV TAFLYADI+EEVFV QPPG+E KDKDGG +VM+L KSLYGLAQSPGNWF TIDPVL IGFV LKSD
Sbjct: 151 REMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSD 308
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 237 bits (605), Expect = 7.130e-68 Identity = 120/181 (66.30%), Postives = 138/181 (76.24%), Query Frame = 2
Query: 575 IPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSDT 1117
IP AM+ PE LW+AA DKE+ SL +LKVYKLVPR+ VP G +I SKWV K K +N++KAR+VA+GWNQV G DCG TFAPVCRLQS+RMV AIA E D +VIQLDVKTAFLYADIEE VFV PGYE K+ + LVM+LEKSL GLAQSP +W +TID L IGF PLKSDT
Sbjct: 301 IPNTCKKAMELPETKLWKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDT 481
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE) HSP 1 Score: 238 bits (608), Expect = 1.150e-66 Identity = 114/183 (62.30%), Postives = 141/183 (77.05%), Query Frame = 2
Query: 566 QPGIPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKARVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSD 1114
QP +P+ +A P+ W AAA++E+ SL E +V+KLVPR+ VPPG+K I S+WV KRK D S+K R+VAQGWNQV GLDCG+T+APVCRLQS+RM+ IAV+ + E+ Q+DV TAFLYADI E VFV QPPG+E KDKDGG LVM+L+KSLYGLAQSP NWF TIDP L I ++ L D
Sbjct: 832 QPDVPRTIEEARAMPDGEQWNAAAEREIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIVYLTLYVD 1014
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Match: A0A6H5JWX0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX0_9PHAE) HSP 1 Score: 219 bits (558), Expect = 5.040e-66 Identity = 111/203 (54.68%), Postives = 138/203 (67.98%), Query Frame = 2
Query: 566 QPGIPKLFYDAMKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKADNSYKA-------------------RVVAQGWNQVHGLDCGNTFAPVCRLQSVRMVLAIAVEMDWEVIQLDVKTAFLYADIEEEVFVAQPPGYETKDKDGGPLVMRLEKSLYGLAQSPGNWFRTIDPVLKTIGFVPLKSDT 1117
QP +P+ +A P+ + W AA++E+ +L E +VYKLVPR+ VPPG++ I SKW+ KRKAD +K + GWNQV LDCG+T+APVCRLQS+RM+ IAV+ + E+ Q+DV TA LYADI E VFV QPPG+E KDKDGG LVM+L+KSLYGLAQSP NWF TIDP L I FV LKSDT
Sbjct: 46 QPDLPRTIQEARAMPDGAQWNTAAEREIANLKERQVYKLVPRTAVPPGRRRIKSKWMFKRKADGPFKGGFRWRKAGTKCLNWTAAAPTLRCAGWNQVPELDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTASLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEISFVLLKSDT 248 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig644.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig644.38.1 >prot_P-littoralis_Contig644.38.1 ID=prot_P-littoralis_Contig644.38.1|Name=mRNA_P-littoralis_Contig644.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=173bp MKTPEASLWRAAADKEMDSLHELKVYKLVPRSTVPPGQKIINSKWVLKRKback to top mRNA from alignment at P-littoralis_Contig644:137168..138556- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig644.38.1 ID=mRNA_P-littoralis_Contig644.38.1|Name=mRNA_P-littoralis_Contig644.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1389bp|location=Sequence derived from alignment at P-littoralis_Contig644:137168..138556- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig644:137168..138556- >mRNA_P-littoralis_Contig644.38.1 ID=mRNA_P-littoralis_Contig644.38.1|Name=mRNA_P-littoralis_Contig644.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig644:137168..138556- (Pylaiella littoralis U1_48)back to top |