mRNA_P-littoralis_Contig644.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig644.24.1
Unique NamemRNA_P-littoralis_Contig644.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig644.24.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-7
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 2 
Query:    2 RPSYGVAGTKMAEFCSGHAKDGMVDVKKKRCNHRGCTK 115
            RPSYG+ G+K AEFCS H+K GM +V KKRC H GC K
Sbjct:   39 RPSYGIDGSKKAEFCSKHSKPGMTNVTKKRCGHAGCIK 76
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BLAST of mRNA_P-littoralis_Contig644.24.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 4.290e-5
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:   38 EFCSGHAKDGMVDVKKKRCNHRGCTKLAKLSVVGNK 145
            EFCS HAK GM++V+KKRC H GCTK       G+K
Sbjct:    4 EFCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSK 39
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BLAST of mRNA_P-littoralis_Contig644.24.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 7.830e-5
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2 
Query:    2 RPSYGVAGTKMAEFCSGHAKDGMVDVKKKRC 94
            RP+YGVAG+K  EFCS HA+DGMV+V  KRC
Sbjct:   12 RPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_P-littoralis_Contig644.24.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 8.280e-5
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 2 
Query:    2 RPSYGVAGTKMAEFCSGHAKDGMVDVKKKRC 94
            RP+YGVAG+K  EFCS HA+DGMV+V  KRC
Sbjct:   72 RPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig644.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FY22_ECTSI1.170e-765.79EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FSL8_ECTSI4.290e-558.33EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FI73_ECTSI7.830e-570.97EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE8.280e-570.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig644contigP-littoralis_Contig644:78796..79173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUJ5
Model size378
Max annot lvl2880.D7FUJ5|-
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000155
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size117
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791344.3358054-UTR-P-littoralis_Contig644:78795..788261680791344.3358054-UTR-P-littoralis_Contig644:78795..78826Pylaiella littoralis U1_48UTRP-littoralis_Contig644 78796..78826 +
1680791344.3611026-UTR-P-littoralis_Contig644:78943..791731680791344.3611026-UTR-P-littoralis_Contig644:78943..79173Pylaiella littoralis U1_48UTRP-littoralis_Contig644 78944..79173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791344.350569-CDS-P-littoralis_Contig644:78826..789431680791344.350569-CDS-P-littoralis_Contig644:78826..78943Pylaiella littoralis U1_48CDSP-littoralis_Contig644 78827..78943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig644.24.1prot_P-littoralis_Contig644.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig644 78827..78943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig644.24.1

>prot_P-littoralis_Contig644.24.1 ID=prot_P-littoralis_Contig644.24.1|Name=mRNA_P-littoralis_Contig644.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=39bp
MAEFCSGHAKDGMVDVKKKRCNHRGCTKLAKLSVVGNK*
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mRNA from alignment at P-littoralis_Contig644:78796..79173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig644.24.1 ID=mRNA_P-littoralis_Contig644.24.1|Name=mRNA_P-littoralis_Contig644.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=378bp|location=Sequence derived from alignment at P-littoralis_Contig644:78796..79173+ (Pylaiella littoralis U1_48)
GCGGCCGAGCTATGGCGTGGCGGGTACCAAGATGGCGGAGTTCTGCTCTG
GACACGCCAAGGACGGGATGGTGGACGTCAAGAAGAAGAGATGCAACCAC
CGTGGGTGCACCAAGCTAGCGAAGTTAAGTGTTGTGGGTAACAAATAATA
CGGAGTTTTGCAACGAGCATGTCAAGGGCGGAAATGTGGACGTTGTCAAT
GAGAGGTGTGCACAACCAGGTTTCACCACCTCTCCTGGCCTCGGTGTGAC
CGGCGGCATCCGAACCTTCTGGGCGCGACATGCTGGAGAAGGCATGGCGG
GTCTCACCGCACCCAAGAACCGAGCTGGTGTCCACAACGGTAACAGTGGC
GGCTCACGAGGGCATGGCGGTGTAGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig644:78796..79173+

>mRNA_P-littoralis_Contig644.24.1 ID=mRNA_P-littoralis_Contig644.24.1|Name=mRNA_P-littoralis_Contig644.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=117bp|location=Sequence derived from alignment at P-littoralis_Contig644:78796..79173+ (Pylaiella littoralis U1_48)
ATGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGGATGGTGGACGTCAA
GAAGAAGAGATGCAACCACCGTGGGTGCACCAAGCTAGCGAAGTTAAGTG
TTGTGGGTAACAAATAA
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