mRNA_P-littoralis_Contig644.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig644.7.1
Unique NamemRNA_P-littoralis_Contig644.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.310e-54
Identity = 93/164 (56.71%), Postives = 118/164 (71.95%), Query Frame = 1
Query:    1 NRAAGTVVTKCVEVTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            NRAAGT+ TKCVEVTK+ +K K+++ V PAIK +WP   R RTIYIQ DN   HR+N   D++ A  + G+DI+LINQP NSP TNILDLGFF ++QSLQDR   RT+D+ I+EV+ A+    P+   KVW SLQA + QI+L  G NT+KLPHL KD  A +G
Sbjct:  109 NRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGG-RGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAIL-QIILAKGNNTFKLPHLKKDNAANSG 270          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: W2QAD0_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QAD0_PHYPN)

HSP 1 Score: 165 bits (417), Expect = 6.540e-47
Identity = 85/165 (51.52%), Postives = 109/165 (66.06%), Query Frame = 1
Query:    1 NRAAGTVVTKCVE-VTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            NR  GT+V + VE V ++ YKA LI  +IPAIK KWP + + RTIYIQQDNAKPH   D  D++ A  SGG+DI++  QPPNSP  N+LDLG+F SIQSLQ +T  R ++ L+  V  A++A     L K++ +LQ CME I    G N YK PH GKD   +TG
Sbjct:  148 NRPKGTIVLRNVESVDREAYKATLIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHVSVDDPDIMAAGRSGGWDIRMRCQPPNSPDLNVLDLGYFRSIQSLQYQTECRGVEALLDTVNSAFSAMKADTLSKIFMTLQTCMECITRANGGNNYKTPHRGKDALKKTG 312          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: A0A1R3KIH7_9ROSI (Transposase, Tc1-like protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KIH7_9ROSI)

HSP 1 Score: 165 bits (417), Expect = 3.990e-46
Identity = 85/164 (51.83%), Postives = 110/164 (67.07%), Query Frame = 1
Query:    1 NRAAGTVVTKCVEVTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            NR AGT+ TK + VTKD  +A +IE ++PAIK KWP   +  T+YIQQDNAKPH      + L+A SS GFDIQ+  QPPNSP  N+LDLGFF +IQSLQ +   RTID+LI+ VE ++       L  V+ +LQ CM +++  GG N YK+PH+GKDK    G
Sbjct:  255 NRIAGTMETKPMLVTKDVTRAYMIEKILPAIKSKWP--DKMETVYIQQDNAKPHINPKDVEFLKAASSDGFDIQISCQPPNSPDLNVLDLGFFRAIQSLQHQEAPRTIDELINAVEKSFNEFPENSLNNVFLTLQNCMIEVMKVGGGNNYKVPHMGKDKLQNQG 416          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: UPI0019D5FBC2 (uncharacterized protein LOC120697786 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5FBC2)

HSP 1 Score: 160 bits (404), Expect = 9.690e-46
Identity = 79/164 (48.17%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    1 NRAAGTVVTKCVEVTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            +R  GT++TK + V +DT ++ LI  V+ AIK  WPA    RTI+IQQDNA+ H   D ED   A +  GFDI+LINQPPNSP  N+LDLGFFAS+QS  D T +R +D+LI+ VE  +   D   L  V+ +LQ C+ +++  GGEN YK+PH+ K++    G
Sbjct:   98 SRPRGTLITKTITVDRDTMRSYLIGKVLWAIKTHWPAEDAGRTIWIQQDNARTHVPVDDEDFARAAAQTGFDIRLINQPPNSPDMNVLDLGFFASLQSKTDTTTSRNLDELIANVENEFRNYDVNDLRNVFLTLQGCLIEVMKAGGENKYKIPHMNKERLEALG 261          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: A0A485KBU5_9STRA (Aste57867_2438 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBU5_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.320e-45
Identity = 82/164 (50.00%), Postives = 109/164 (66.46%), Query Frame = 1
Query:    1 NRAAGTVVTKCVEVTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            NR +GT+VT  V V++DTY+  L+  VIPAIK KWP A R   I IQQDNA+PH     + +L AC + G+DI +  QPPNSP  N+LDLGFF +IQSLQ+RTR RTID+LI+    AW + D + L   + +LQ+CM + +  GG N YK+PH+ K    + G
Sbjct:  242 NRPSGTLVTVPVNVSRDTYRDMLVNNVIPAIKNKWPDA-RTSCIVIQQDNARPHVTTTDKGVLAACKADGWDIAMECQPPNSPDLNVLDLGFFRAIQSLQERTRCRTIDELIAATLSAWVSVDASTLNANFLTLQSCMVETIRSGGNNNYKVPHMKKAPMMKQG 404          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: A0A6A4YXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI9_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.380e-45
Identity = 78/164 (47.56%), Postives = 112/164 (68.29%), Query Frame = 1
Query:    1 NRAAGTVVTKCVEVTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            NR AGT+ T+ V VT+  YKA LI+ VIP IK KWP++   R + IQQDNA+PH       +++AC SGG++++++ QPPNSP  NILDLGFF +IQSLQ++  +R ID +I+  + AW+    + L   + +LQ CM++I+   G+N YK+PH+GK K A  G
Sbjct:  257 NRPAGTLETQPVSVTRPVYKAMLIDKVIPTIKSKWPSSAG-RNVIIQQDNARPHVPPSDSAIVDACKSGGWNMKVVYQPPNSPDLNILDLGFFRAIQSLQEKNHSRNIDDIIAATDQAWSDELSSTLNDNFLTLQGCMQEIISAQGDNNYKIPHMGKAKLAARG 419          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 161 bits (408), Expect = 1.080e-44
Identity = 83/165 (50.30%), Postives = 108/165 (65.45%), Query Frame = 1
Query:    1 NRAAGTVVTKCVE-VTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            NR  GT+V + VE V ++ YKA  I  +IPAIK KWP + + RTIYIQQDNAKPH   D  D++ A  SGG+DI++  QPPNSP  N+LDLG+F SIQSLQ +T  R ++ L+  V  A++A     L K++ +LQ CME I+   G N YK PH GKD   + G
Sbjct:  244 NRPKGTIVLRNVESVDREAYKATHIGDIIPAIKAKWPRSGKKRTIYIQQDNAKPHVSVDDPDIMAAGRSGGWDIRMRCQPPNSPDLNVLDLGYFRSIQSLQYQTECRGVEALLDAVNSAFSAMKADTLNKIFMTLQTCMECIIRANGGNNYKTPHRGKDALKKAG 408          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: W4HAZ6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAZ6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.820e-44
Identity = 76/164 (46.34%), Postives = 106/164 (64.63%), Query Frame = 1
Query:    1 NRAAGTVVTKCVEVTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            NR AGT+ TK V VT+D Y+A LI+ VIPAIK KWP     R I IQQDNA+PH       +++AC+S G+ ++L  QPPNSP  N+LDLGFF +IQSLQ++  +R +D +++  + AW   +P  L   + +LQ CM +++   G N YK+PH+ K   A  G
Sbjct:   41 NRPAGTLETKPVSVTRDMYRAMLIDHVIPAIKAKWPVGESRRII-IQQDNARPHVPPLDSRIVDACTSDGWMMELKYQPPNSPDLNVLDLGFFRAIQSLQEKNYSRNVDDIVAASDEAWKQVEPMTLNANFLTLQCCMHEVIRVAGNNNYKIPHMKKASLALKG 203          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: A0A834FTG5_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FTG5_RHOSS)

HSP 1 Score: 159 bits (402), Expect = 5.140e-44
Identity = 79/164 (48.17%), Postives = 111/164 (67.68%), Query Frame = 1
Query:    1 NRAAGTVVTKCV-EVTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTART 489
            NR AGT+ TK +  VTKD  ++ LI  V+PAI+ KWP ++ H TI+IQQDNAKPH        +EA +  GFDI+L NQPP+SP  N+LDLG+F +IQSLQ +   +TID+L++ VE ++       L +V+ SLQACM +++     N YKLPH+GK++  R+
Sbjct:  225 NRPAGTLETKAILSVTKDIIRSCLINQVLPAIQSKWPPSSAHETIFIQQDNAKPHIQPFDLQFVEAATKDGFDIRLSNQPPSSPDMNVLDLGYFRAIQSLQHQEAPKTIDELVNAVEKSFEELSVDSLNRVFVSLQACMVEVMKVHEGNNYKLPHIGKNQLIRS 388          
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 157 bits (398), Expect = 5.340e-44
Identity = 83/165 (50.30%), Postives = 111/165 (67.27%), Query Frame = 1
Query:    1 NRAAGTVVTKCVE-VTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDNAKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQDRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTYKLPHLGKDKTARTG 492
            NR AGT+VTK  E +TK+  K+ LIE VIPAI  KWP   R  TI IQQDNAKPH   ++ + ++A S  GFDI+LI QPPNSP  N+LDLGFF SIQ LQ      TI++L++ V+ ++      KL +V+ + Q CM++I+   G+N YK+PH+GKD+  R G
Sbjct:  175 NRVAGTMVTKVDESITKEKVKSCLIEKVIPAIHAKWPQGMR--TIIIQQDNAKPHIDCNNAEFMQAASKDGFDIRLICQPPNSPDLNVLDLGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMGKDRLEREG 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig644.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY9_9PHAE1.310e-5456.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2QAD0_PHYPN6.540e-4751.52Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A1R3KIH7_9ROSI3.990e-4651.83Transposase, Tc1-like protein n=1 Tax=Corchorus ol... [more]
UPI0019D5FBC29.690e-4648.17uncharacterized protein LOC120697786 n=1 Tax=Panic... [more]
A0A485KBU5_9STRA1.320e-4550.00Aste57867_2438 protein n=2 Tax=Aphanomyces stellat... [more]
A0A6A4YXI9_9STRA4.380e-4547.56Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W2NW41_PHYPR1.080e-4450.30HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
W4HAZ6_9STRA3.820e-4446.34Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A834FTG5_RHOSS5.140e-4448.17Uncharacterized protein n=3 Tax=Rhododendron simsi... [more]
UPI0007F012D15.340e-4450.30uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig644contigP-littoralis_Contig644:24980..25471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog38727.Pavir.J08811.1.p
Model size492
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.41e-45
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta,3M2XW@4447|Liliopsida,3IN2T@38820|Poales
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791344.3038075-CDS-P-littoralis_Contig644:24979..254711680791344.3038075-CDS-P-littoralis_Contig644:24979..25471Pylaiella littoralis U1_48CDSP-littoralis_Contig644 24980..25471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig644.7.1prot_P-littoralis_Contig644.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig644 24980..25471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig644.7.1

>prot_P-littoralis_Contig644.7.1 ID=prot_P-littoralis_Contig644.7.1|Name=mRNA_P-littoralis_Contig644.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
NRAAGTVVTKCVEVTKDTYKAKLIEGVIPAIKEKWPAATRHRTIYIQQDN
AKPHRVNDHEDLLEACSSGGFDIQLINQPPNSPGTNILDLGFFASIQSLQ
DRTRARTIDQLISEVEVAWAAADPAKLGKVWTSLQACMEQILLCGGENTY
KLPHLGKDKTARTG
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mRNA from alignment at P-littoralis_Contig644:24980..25471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig644.7.1 ID=mRNA_P-littoralis_Contig644.7.1|Name=mRNA_P-littoralis_Contig644.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig644:24980..25471+ (Pylaiella littoralis U1_48)
AACCGTGCTGCTGGGACGGTTGTAACGAAGTGTGTGGAGGTTACGAAGGA TACCTACAAGGCGAAGCTGATCGAAGGGGTGATCCCCGCAATCAAGGAGA AATGGCCGGCGGCGACTCGGCACCGCACCATCTACATCCAGCAGGACAAC GCCAAGCCCCACCGTGTCAACGACCACGAGGACCTCCTGGAAGCGTGCTC GTCGGGTGGATTTGACATTCAGCTCATCAACCAGCCACCCAACAGCCCCG GCACCAACATCTTGGACCTGGGTTTCTTCGCGTCAATTCAGTCCCTGCAG GACCGCACTCGAGCCAGGACTATCGACCAGCTCATCAGCGAGGTCGAGGT CGCATGGGCGGCGGCGGACCCGGCGAAGCTTGGCAAGGTGTGGACTTCGC TCCAGGCTTGCATGGAGCAGATCCTGCTTTGCGGCGGAGAGAACACGTAC AAGCTGCCTCACTTGGGCAAAGACAAGACTGCACGGACTGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig644:24980..25471+

>mRNA_P-littoralis_Contig644.7.1 ID=mRNA_P-littoralis_Contig644.7.1|Name=mRNA_P-littoralis_Contig644.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig644:24980..25471+ (Pylaiella littoralis U1_48)
AACCGTGCTGCTGGGACGGTTGTAACGAAGTGTGTGGAGGTTACGAAGGA
TACCTACAAGGCGAAGCTGATCGAAGGGGTGATCCCCGCAATCAAGGAGA
AATGGCCGGCGGCGACTCGGCACCGCACCATCTACATCCAGCAGGACAAC
GCCAAGCCCCACCGTGTCAACGACCACGAGGACCTCCTGGAAGCGTGCTC
GTCGGGTGGATTTGACATTCAGCTCATCAACCAGCCACCCAACAGCCCCG
GCACCAACATCTTGGACCTGGGTTTCTTCGCGTCAATTCAGTCCCTGCAG
GACCGCACTCGAGCCAGGACTATCGACCAGCTCATCAGCGAGGTCGAGGT
CGCATGGGCGGCGGCGGACCCGGCGAAGCTTGGCAAGGTGTGGACTTCGC
TCCAGGCTTGCATGGAGCAGATCCTGCTTTGCGGCGGAGAGAACACGTAC
AAGCTGCCTCACTTGGGCAAAGACAAGACTGCACGGACTGGA
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