mRNA_P-littoralis_Contig1166.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1166.19.1
Unique NamemRNA_P-littoralis_Contig1166.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1166.19.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.470e-31
Identity = 62/113 (54.87%), Postives = 77/113 (68.14%), Query Frame = 2 
Query:    5 LATAAGCPHGPELVTFSQNKRAARTCGQHQAHVLAALSMQDVLARQDKLDGNIGYCKAKRVRNQLYYETAKDLGACGAGQQCPPHDCMKAALKMFAGGDEDGVPLEIVRALCK 343
            LA  +GC H   LVT+ Q++ AA TCG+ QA VL+    + VL RQ   DG+ GYC AKRVRNQ+YY+T+ DL   G G QC    CMKAAL++FAG   DG+P EIVRA+CK
Sbjct:   71 LAKESGCQHEAPLVTWKQDREAATTCGRLQAGVLS----RKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAMCK 179
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BLAST of mRNA_P-littoralis_Contig1166.19.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.860e-23
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 2 
Query:  134 ARQDKLDGNIGYCKAKRVRNQLYYETAKDLGACGAGQQCPPHDCMKAALKMFAGGDEDGVPLEIVRALCKY 346
            ARQ KLDG+ GYC AKRVRNQ+YY+T  DL A GAG QC   +CM AALK+F+G    G+P EIVRA+C Y
Sbjct:    8 ARQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVFSGKGNKGIPTEIVRAMCMY 78
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BLAST of mRNA_P-littoralis_Contig1166.19.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.460e-21
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 2 
Query:   23 CPHGPELVTFSQNKRAARTCGQHQAH--VLAALSMQDVLARQDKLDGNIGYCKAKRVRNQLYYETAKDLGACGAGQQCPPHDCMKAALKMFAGGDEDGVPLEIVRALCKY 346
            C H    V++ ++  +  +CG HQ+   VLAA+ +QDV  R      + GYC AKRVRNQ YY+TAKDLG  G G Q    +CM AA K+FAG   DG+P E+V+A+ ++
Sbjct:   75 CDHHQPPVSWQEDP-STTSCGLHQSASAVLAAVRLQDVFTRYKD---DPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFAGDGNDGLPTEVVKAMLQH 180
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BLAST of mRNA_P-littoralis_Contig1166.19.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.980e-19
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 2 
Query:  164 GYCKAKRVRNQLYYETAKDLGACGAGQQCPPHDCMKAALKMFAGGDEDGVPLEIVRALCKY 346
            GYC AKRVRNQ+YY+TAKDLG  G G Q    +CM+AA K+FAG   DG+P E+V+A+ +Y
Sbjct:   29 GYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFAGDGNDGLPTEVVKAMLQY 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1166.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE5.470e-3154.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE1.860e-2363.38Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE6.460e-2145.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE8.980e-1959.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1166contigP-littoralis_Contig1166:53824..55303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size351
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.8659775-UTR-P-littoralis_Contig1166:53823..538251680789484.8659775-UTR-P-littoralis_Contig1166:53823..53825Pylaiella littoralis U1_48UTRP-littoralis_Contig1166 53824..53825 -
1680789484.8940442-UTR-P-littoralis_Contig1166:55185..553031680789484.8940442-UTR-P-littoralis_Contig1166:55185..55303Pylaiella littoralis U1_48UTRP-littoralis_Contig1166 55186..55303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.8746629-CDS-P-littoralis_Contig1166:53825..540501680789484.8746629-CDS-P-littoralis_Contig1166:53825..54050Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 53826..54050 -
1680789484.8838243-CDS-P-littoralis_Contig1166:55179..551851680789484.8838243-CDS-P-littoralis_Contig1166:55179..55185Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 55180..55185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1166.19.1prot_P-littoralis_Contig1166.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1166 53826..55185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1166.19.1

>prot_P-littoralis_Contig1166.19.1 ID=prot_P-littoralis_Contig1166.19.1|Name=mRNA_P-littoralis_Contig1166.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MQDVLARQDKLDGNIGYCKAKRVRNQLYYETAKDLGACGAGQQCPPHDCM
KAALKMFAGGDEDGVPLEIVRALCKY*
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mRNA from alignment at P-littoralis_Contig1166:53824..55303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1166.19.1 ID=mRNA_P-littoralis_Contig1166.19.1|Name=mRNA_P-littoralis_Contig1166.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1480bp|location=Sequence derived from alignment at P-littoralis_Contig1166:53824..55303- (Pylaiella littoralis U1_48)
GGAGTTAGCCACCGCAGCAGGCTGCCCTCATGGACCGGAACTTGTGACCT
TCAGCCAGAACAAAAGAGCGGCGCGGACCTGCGGGCAGCACCAAGCTCAT
GTTCTGGCGGCGCTGAGCATGCAGGCAAGGTGTCATAGCTGTATCATAGC
ATAGGTAAAAACCAAAGTCGTAGCACCCCCGTACAGCAGCGGTGTCTTAT
CTCTTTACGTAGTTGGCGAAGAGTAGGCAATCATAGCACCCAGCACAGAC
GATTACTTGCGATTCCTCGGGAAGAACCCAGTACAAGTACAGCAGTAGCG
GAGTGCTGTGTGGTGGATTTCTATACTGAATACAATATAGATTATGCAAG
AGTACTGAAACGCATGTACGTGACTCGTTCTGCCGTACACACAGAGACAA
CACAAACAAGTACGGCAGGCACGCATAGCACCCATCACAAACGATCACTT
GCGAAAAAAAAAACTTGGGAAGAACCCAGTACATGTAGCGGAGTGCTGTG
TGTTGGTTGTCTATACTGAATACATCACATTCAGTATACTGAATACATTA
CATTTTCATGAAAGAGTACTGACATGCCTTATCGGTACTCGTACTGCTGT
ACACGCAGTCAACCCCACACACAAGTACGGCAAAAACCACACTCTCGTGC
CTTACGCTGCCCCCCTTCTGTCACTTGATTTGTTTTGGAGTCGATTGCTG
CGCTCGTCGTACAGATAAATTGATACAGCACTCCGGATGTCAAACTGTTG
CGTACTCGGAAGTAGGGTGTGAGGATACGTTGCTGGCTGGAGACGTTGAC
TCGTGTGGTACAGTGAGTATTGAATCGCAGTTTTTTTCCCACCGCAGTAC
TGCTGATACTCTGGGTAATCCTGGTGGTGTGGTACGTATGTTATGCAGCG
GCTGCGGTGGAAAAACCTTGACTAAAAATAATAAAGGGAAACGCTGCAAA
TTTACTCTACAACATATATGAGCTCCATCCATCTGTACCGGGCGTGGCGG
CGAACACAAAGACCGTCAAACCACACGTCTTGTGTGCAAGTGCATAACTA
AGAGTAATAAAGGAATTCCTATTGGCATCGTCCTAAGTACTGCCGGCAAG
CCGACGAGATCGTTATAGTCGCAAAAGCGCTGGAGTCTGACCCTTTGTTC
TTCATGACCTCATGACACACACTGGGTTGGGATTTTGAGTCACTGGCACC
CGGGGAAACTGCTGAAACGACAAATTGTTATTATCCTTTCCTCGACTCCG
CAGGACGTTCTGGCGAGGCAGGACAAGCTTGACGGGAACATCGGGTACTG
CAAGGCGAAGAGGGTCCGAAACCAGCTCTATTACGAGACGGCGAAAGACC
TCGGCGCGTGCGGGGCCGGCCAGCAGTGCCCGCCGCATGATTGTATGAAA
GCAGCGCTTAAAATGTTTGCTGGGGGTGATGAGGATGGAGTCCCGCTAGA
AATCGTGCGGGCTCTTTGCAAGTATTGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1166:53824..55303-

>mRNA_P-littoralis_Contig1166.19.1 ID=mRNA_P-littoralis_Contig1166.19.1|Name=mRNA_P-littoralis_Contig1166.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig1166:53824..55303- (Pylaiella littoralis U1_48)
ATGCAGGACGTTCTGGCGAGGCAGGACAAGCTTGACGGGAACATCGGGTA
CTGCAAGGCGAAGAGGGTCCGAAACCAGCTCTATTACGAGACGGCGAAAG
ACCTCGGCGCGTGCGGGGCCGGCCAGCAGTGCCCGCCGCATGATTGTATG
AAAGCAGCGCTTAAAATGTTTGCTGGGGGTGATGAGGATGGAGTCCCGCT
AGAAATCGTGCGGGCTCTTTGCAAGTATTGA
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