mRNA_P-littoralis_Contig644.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig644.46.1
Unique NamemRNA_P-littoralis_Contig644.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig644.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig644contigP-littoralis_Contig644:152549..161024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size774
Hectar predicted targeting categoryother localisation
Exons5
Cds size429
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig644.46.1prot_P-littoralis_Contig644.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig644 159507..160855 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791344.0841396-UTR-P-littoralis_Contig644:152548..1526121680791344.0841396-UTR-P-littoralis_Contig644:152548..152612Pylaiella littoralis U1_48UTRP-littoralis_Contig644 152549..152612 -
1680791344.0970824-UTR-P-littoralis_Contig644:159394..1595061680791344.0970824-UTR-P-littoralis_Contig644:159394..159506Pylaiella littoralis U1_48UTRP-littoralis_Contig644 159395..159506 -
1680791344.1524498-UTR-P-littoralis_Contig644:160855..1610241680791344.1524498-UTR-P-littoralis_Contig644:160855..161024Pylaiella littoralis U1_48UTRP-littoralis_Contig644 160856..161024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791344.1128883-CDS-P-littoralis_Contig644:159506..1596041680791344.1128883-CDS-P-littoralis_Contig644:159506..159604Pylaiella littoralis U1_48CDSP-littoralis_Contig644 159507..159604 -
1680791344.1242723-CDS-P-littoralis_Contig644:159876..1600541680791344.1242723-CDS-P-littoralis_Contig644:159876..160054Pylaiella littoralis U1_48CDSP-littoralis_Contig644 159877..160054 -
1680791344.1345866-CDS-P-littoralis_Contig644:160073..1601281680791344.1345866-CDS-P-littoralis_Contig644:160073..160128Pylaiella littoralis U1_48CDSP-littoralis_Contig644 160074..160128 -
1680791344.1436176-CDS-P-littoralis_Contig644:160757..1608551680791344.1436176-CDS-P-littoralis_Contig644:160757..160855Pylaiella littoralis U1_48CDSP-littoralis_Contig644 160758..160855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig644.46.1

>prot_P-littoralis_Contig644.46.1 ID=prot_P-littoralis_Contig644.46.1|Name=mRNA_P-littoralis_Contig644.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
MSGEVEEAAQPSESAPQHRQQDQRQRVVCDRRKTRVGISSKAKGSSQQSS
AQQQQQHRRQPGTTATSVDASFRLAGSILLRRALTKSKHRTSTGSEDGGG
ATTGSSGRGWDHTPIEEKSWCTAANMGTRTLACAWPPCRMLS*
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mRNA from alignment at P-littoralis_Contig644:152549..161024-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig644.46.1 ID=mRNA_P-littoralis_Contig644.46.1|Name=mRNA_P-littoralis_Contig644.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8476bp|location=Sequence derived from alignment at P-littoralis_Contig644:152549..161024- (Pylaiella littoralis U1_48)
GCAGACTTTTTGGTCTTGTGCCTGCTTCGCGAACTTCACGGCCGATTATA
CATCGACCATGCTCGATAAACAAGCAGTCAGCAGCCCAGTGAACGAGTCT
GGTTGATGCACCTCTGTCGAAGTGAGCAGCAGTCCTCAACATCACGGCGG
TGTCAATCGGCCTAGTCTCATGTCGGGTGAAGTCGAGGAGGCAGCGCAAC
CTTCCGAGTCGGCGCCGCAACACCGGCAGCAAGACCAGCGGCAGCGCGTG
GTATGTGATCGGAGAAAGTGAGTGGGAGGCTGGTTGCGGGGGGCGGTGTT
GTGTTTCGCTTGTGATCGCTGTGGACAAGGTTATAGCGAGCGTTGTGTCG
ATCGTAAACGAGTGGATCAAGCTCAAGGGTTTTGGCCTCAGCACAGATCG
AGAAGTGAGCGGTAAGCTGGACCGGCATGGTTCTCCGAGCTGGTACCATC
CCGCCCGAGTTGTCGCAACAGACACTGGTGTGTCTCTCTGTTTAGCGTTG
ACTGTGTTGCAGCTTTTGAGGAAAGCAGGCACCGCACCGCGGTGTCACAC
GTCGGCCTGCAGCTGACACAACCACCCTCAATCCCTCGCGTGACCTCAGG
GATCCTCCCTTTACTACCTCCAAAAGAGGCAGTATGCGACCGCCTCGATT
ATCGCCGGGGGATCAACGGGACGGAAACCGGCTCTGAAGCTACTGCGTTC
AGCCTAGCTGCAACTGGTCAGCGCTATGGCCTCTAGGAGAAGAGGGTCGC
CGAAAATGCCAGAAGCTTTCTGAGCGTGCGTTGATCTCCTGGCTTTAGCA
ACAGCGGCCTTCGGGCACAGCTTTGACCCCCACGGCCACCACCACTGACG
TGCTCTTCCCCCTTGCTTCGTATCGCGGTGACGGGCTCGATCGCAGGACC
AGAGTCGGCATTAGCAGCAAAGCCAAGGGTTCAAGTCAGCAATCCTCAGC
AGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGGCGCCAACCC
GGCACAACAGCAACGAGTGTCGATGCCTCTTTCCGCCTAGCGGGGAGTAT
TCTCTTGAGACGTGCCCTCACGAAGTCAAAGCACCGGACTTCTACGGGGA
GTGAGGATGGGGGCGGGGCAACGACGGGTTCATCGGGCAGGGGCTGGGGT
GAGCAATTTTTTCAGGTTCGAAAATGTTTCTTTATGATCAAGCGTAGAAC
TGCATCGTCCGCCTGTGCCTCTATGCAGTTGGTTCATACACAGTGGCTCA
AGGATAGGACCCGATCTCGACTGTATTGAAAGTGACATCTTTTGGGAGGA
AAGGTCTGCAATTACTGGCACGAATCATACCAACCAGCCGCACTTGCTTG
ACGGCGGCCGCCGTATCAAGTCATAAATACCTTTGACAAACTGCTGTAAT
TTTCTGTGTTTGTACAGCAGATCACACCCCTATTGAGGAAAAGAGCTGGT
GTACCGCGGCAAATATGGGGACAAGAACACTTGCGTGCGCATGGCCCCCG
TGTCGTATGCTTTCATGAGGAGGGCGGGTATCGGCACTGACCCACGTACA
GAATCGATGGGACGGCGATATTCAACAGTACAAACTACGTCCGACGCGAA
TCATGTACCTCACGGGGCCGGTTGTCGAAGGTGCACGTCGAAGATACAGA
GTGCCATTCCAAACGCCGCTTGCACTAAACTGAGACTGAGAGATCCAAAC
CTGTACACGTCGTAAACTCTTTAGCCCAGGGGATGACCGCTACACAAACA
GTCATACTTCGTTTGTGTATGCAGTAGAATATGTTGTAGTCAACCTTGTG
ACAAACGTTCGCCATGAATATCATACGCCAGTGAGACTCAGGCTATTTTT
TGGCTTATTTTGAGCGCGAGCGCCGCTACTACTCCTGCTGCAACTCAACA
GCAAAGTTATTTACGACACTAGGAAGGATGACGTTGAAAACATCTAATGT
CGATGTAAAACCCGTGGCTAGACAGCAGCACTTTCTCTGGCCCCACCCGC
CTTTCTTTGCACGTATCTTGAGGTGGTGTCTCTCATGATGGTAAATGGTC
TGGTCCGAAAGGTGCTTTTTTTATTTTATTGTCAAAAAAGTGCCCAATCC
TCAGGCCAAGACGTTAATGCAGATTGCCCAGAATAAGCGTTTCTATCGGG
CATTGCTACGTCGAACACATGAAATCAGCAGAGTATACCATCGACCAGTG
ACCTGCGTGCTGGCACGCTCAGATCTGGTGCTGGGGTCGAGATATTGGAG
GTCGAAGTTATGGTTCAGCCGGTCTAGAAATTGTCCGCATATTAGCCAGA
AACCGAACACGTGCCACTGCCGTACTCGTCGCCATGGGCCCCGCTGTTGG
TTGACTGCAGTAGCTAGTGGACTGCATCAGTGGCTCTTTGCCCTAGCTAC
TGCTCTCGACAGGTTTTACAAGAGATGAGGCCCGTGGTGACGAGAACAGC
AGTTGGCATGGACAAGAAGATGTTCCGGACCTGGTTGAGATTCGGACGGT
TTCTGGACTGCCTGAAACATAACTCCGACCTCCGATATCTCGGCCCCATC
AGCAGACCTGAGCCTGCCAACACCCAGGTCACCGCTCCGTGGTGTATTAT
GCTGATTTCATGTCTTTGACGTCGTAATTCCCGATAGGAACGCTTGTTCT
GAGCAACCTGCCTTATCGTCTCGGAATGAGAGTTTGGCACTTTCTTGATA
ATGAAAAAAATACAATCTTCTGGACCAGACCGATAACTGTGACTGGTTTT
GCTCCTGCGACGTTGTTCCCCTGATGCGGACCCAGGTTTCTAGTGTAACG
TCATAATCGCCACTCTTGAACGTTGGGACTTTACGCCTCACCGCCACCAG
CAGCAGCAGCAGCAGCGGCGTTTTTAGCACTTATTTGCCACCTCAATACG
AGACACACCCCATGGGTGCTGTGTACCATGGCCAAAACGCCGTCTATTGC
TGGAGCAACTAGCGCATCATCGCGAATACGTCTAGCGTAACAAGGATGTG
GTGCTGTGGATGGAAGGGTCACAACCCTGGTAATGGTGTATCCCTTAACG
CACGCATGCCGTACACCCAGATTCAAGAGCCCAGAACAGCATAATGATGA
AATGAAACTATTTGCACCCTGGGGAGTGCGTCCCCACACATGATGCCGAC
AGGGTCAATGCATCCCGCAATTTCCCTTGAGTACCCCGCCCATATCGAGC
CCCTCCCCCCCGCCTTGCAGTTGGGAAGAAACAAATCTAGTCGCGGGGGC
ATGCCATATTGGATTCCTGCCCCATTTGATTCGTCACGCCTAGGGGATTC
AAGTCATCAAAAACAAATCGATCCCTTCCATTTTTTCCTACTTTTTCCAG
CGTGTTCCACCTATATACGACCGCTCATACTCATTTCTGCGTTGTTTTGT
TCTTGATGTGTTTTGTTGCTGCACGACAGAGGGCGATCGATTTCCTCTGT
TTTGGTTATCGACCTTCCCCTCTTTTGTCGTATTGTTTTTTTCTATTATC
CCTTGTGGATCAACGTAGCAACAGCTGGCGTTCTCCTCTTCGTCCCGCCT
CCTGCTTCGTTTTTCACCCCCTATTGTCCCCCGCAGACACAGCAGTCTCT
CCCATTTCTCCCATATTGTTCCTGCCGTCCCTTGCAGTTTGGGCCGTTTA
TGTTTTTCATATGTTGTCGTCGTCGAAAGTAAATGAGGAATTACAAGAAA
CATTATGTTCCTGGAGCACGGGTATTTGAAGGGGTATGAACTAACGTGAG
GAATTTACAACCGCCTCCTCGAGCCGGAGCAAGGGGGGCCAGTACTTGAC
GTACTTTAAAACAACAGATTGTGCCCGCTCACAAGCAGAGTGCCCCTTTC
TAACCATGCCCATGGTGACAATATCTTAGAATAATATCTTCAAGTGTGCA
AACGAATTTTGGCGAACTTGAAGACTTCCTGGCAACATCTGGTCACCGTA
GAGATAGGTGTGTTATATCAGCACAAGAAACGATTCATGTATCATATCCT
CGTTTTCCCGTACATAAGTTGCCTAAGTTGCCGTGCTTCCGCTCCAACGA
CACATTGCGATCTGTTCGTTCATGTTCGTTCCCATGGTCGACGAGCAGCT
CAGGCCAGCAAAACCCACGCGTGTGATCTTCGTTCCCTCGTGAAAACGTA
AAATCGTTTCGAGGGTGACATGCTATTTCTACAAATTGACGAAAGTACCA
TTGAAGGAGCCCCAGCGACGAGTGGTATCATATGGTATGCCACATCAACT
TTCGATCTCCGGCCAAAACAGAGGGGACACAAATCTTCACAACAATTCAT
TTTCCGGTTGCGTTTCTCACTAGGGGGCCGGTACTGGTACTGCTGTCGTG
TGTGCGCCCACGCGGGCTTCATTCACCAAGGAGCGCCGGTGTCATTCCTT
GGGTTACGTACGGACGGATGGACCAGTATGATATACACAAACTGTTTTGC
CTTTGTCGGTATCACATAGGTAGAAAAAGCATACATGTTGGACATAGATA
CAGAGACATGTTGTACGATGTCGCACCACCTGGATCGATTCGTCAAAACT
CGGCTACTCTCATCACGACGAAAACGGGGCGATCGCCAAGATATAAACAC
GACGTCTACGTCTCTTTCGGGAGGAAGAGCTCTTGGCAAAATCACTTCGA
CTTTTATACAGCCGAGCCGATCACTCAGTTCGGCGAGATGACCCTTTTCC
CTGCTGCTTACAGCAGTGAGGTGATTGAGTTAATAAAACGAGCTTTGACA
ACGCGATCAAGGAGGCCCCGCGTGGTATTTTGCGGTAAACTACACAAAAA
TCGGATCGACGTCAGAGATATATCTGTCTCTATGTACATTTCTTCGAAGT
AGATAGTGTTGTTGTTGTTGTTGATTCTCACATTAGCTCACTACCGCCGC
AGTCTAGCCCGTGGTCACAAACTAGGCACATATCGTGCTAGGAGGAAAAA
AAATAAAAAAATAAAATATATGGACTATGATCACCCACAGTCAGATCAGA
CGTGGTACCGTTGGGGTACCATCTGTGGTGGCCAGGATACCAAAAAAATA
CAGAAAAAATAAAAACAGGCTCGAAAGAAAAACAAAAATTGAAAACAGTC
CGACAAACAAAAAATAACCAAGACAAACCTCAACCATAAGCATATACTTC
GAAGTACTTCGTGCATCGAACCAGGGCCCAGGGCCATGACAGACCAAGGC
AGACGCAAACCAGGGCGATGGCCCAGTAACTATATGATCAACAGACGAAA
GACAAAAAATAAAATAAAAAAGAAGAAGATACAGGGAGGGCACAAAGACT
GAGGGAGTGCATTCGTATACAAACATAACAAACAGGCCGCCGCCAAACAA
AGGGGAAGCAGGGGAACGAAAAGGGAAAAGAAGATCGGAAGTACCGGAAG
TCGGGGGGGGGAAGGGGAAGGTGATAAAAATAAATGAAAGGCATGCAATC
AATCGCAAACGTGTCTTGCCACGAGGTCTGCCTGTTCACGCTTGCTCTCC
TCAGTCGCACTCATGCCTCCTGCTACTGACACCACCGTACCCAGTTGTTT
CTGCCCCACATCTTTGGCAGCAGCTACACCACCACTCCGCCCTACAGGTT
TTCCACTCCGGCCACCCCGTAGCTTGGCATTGGACTGCTTCTTCTTGTGC
TGTGCAACTCCAACCCCACTACCCCGCTGCCCTTGTGCCCCCCGTACTCC
TCCTCTCGTTTACCCCCGCCATCCGTTCTCCCTCTTTTAGTCAAGGCCTG
CCTCTCAGCCGCGTCCCTCTCTCTTTTCCGTCGACGTGTCTCTGATAGGT
CTCCCTCTTTCTTGAGCCACTCGTCCGTGAATCGCCGCGCACCCTCGTCG
ACCCTGTCGTACCACTCGTCAGCTCTCTTGGCACTTGCCTCCCACCCCTC
CTTTTTGTCGACCACGATGTCGAACGCTTCGAGGTCCTCCCGCATTCGCC
TCAGCCAGTCAAACTCTTGCCCCCCAGATACCTTGCTCCCCCTGCAATTC
TCCCAAGAGAGCAATTTTCGGGAGTCTCTCGTCTCTCATGCGCGCAACGA
ATCCTGCGAAGCACAGTCGCCGCTTGCGCAGTGTGGCCTCAACGCTCTCG
TTGCAACCCGCGGTAATCAGGGCTTTGGCGTAGGAGAGGGGTCGGTCTGT
TCTCTCCCTCTTTTTCCATCCGATGCAGCGAAGGAGGAAGAAGTGGTGGG
CTGACCGAAGCTTGCGGTACTCCGCTGGCTTCAGATTCCATGTGACACAC
CCGTAGAGTAGGGTCTCCACGACTTCAGCTTGGAGGAGTCGTACTTTTAG
TCGAAGAGGGGCCCCCGGGCGGTCGTACATTGCCTGGCTGTTGCGCTGGA
AGCAGGCGTGCGCTCGCTGCACTCGGTGGTTAATCTCGCCCTCAATGCTG
CCGTCCTCACAAATCTTACCCCCGAGGTAGACAAAGTCTTTCTTCTGCTT
GAAGACCATCCCGGCAGCGTCGATCGTGAACGAGCACGCCTCCATCCCTT
TCGCGAGCATACACATGGTCTCCGTCTTGGGTTCTGACACCAACAGCCCA
AACCGCCCGGCCACACGTACGATGATCGACATCACCTTCTCAAGGCTCCC
AGGTGATTGAGATACAATACAGGCGTCGTCGGCGTAGAGCATACTCCAGA
TGGACTTCACTGCCTCCACCAGTCGGGCGTTCCTCCCCTTCCCCTTCGTC
ACCTTCCTCTTGACCTTGGCCATGTCCGCCATCACCTCCGCATCCTTGCT
GATCTCGGCAAAGGCCACCATGAATATCGCAGCAAAGAAAAGGTTGAATC
GCAGCAAAGAAAAGGTTGAACAGCAGGGGTGCCAGATTGCATCCCTGTCG
GAGTCCCTGCCCCACATCAAACCAGTCGGAGCACCTCCCGTCGTCCATCC
GTACGCATGCTCTCATTCCGTCGTGGAATTGGCGAATGACCGCAAGCATC
TTGGGGGGCACTCCGAGCCGCTTGAGCACCGACCACAGTAGTTCCCGGTC
TACGGAGTCGTAGGCTTTCGTGAGGTCAATGAAGCAGGCGTACAGTGGGG
TTGACTTCTTCCGTGCAAGCTCGTGTAGGCGTCGAACCACGAACATCATG
TCAACCGTTGAGCGGTTTGGTCGGAATCCGCTCTGTTCCTCCGGCAGGAT
GCCCTCTCTTTCGCAGTAATCGCTTAGCCGGGTGGCGACCAGCTTCAAGA
GTACCTTACCAGCGTGGGCCACAAGGGAGATGCCTCGGTAATTGCCGCAT
TCCGTCTTGTCCTTCTTCTTGTGCAGCACCTTGATCGAAGCATCTTTCCA
CTGCTGTGGCACCCTTCCCGATTGCCAGATGTTGATGATGATACTGTAGA
ACTGCCGTAGGAGGGCTTGGTCTCCGTCAAGGAAGAGCTTGATAAGCTCC
GCCGGTAGTTCGTCCGGGCCCACAGCTTTCCTGTTGGCCATTCCCCGGAT
TGCTTCCTCAACCTCAAACAGCGAAGGGACGTCATCAAGCGGTACGCGCT
GAGGCCAGGGCTCGATCTTGTCCACCACTCTCGGATCCAGGGTCGGTGAC
TTGGTGTTGAGCAGAGCATGGAACCACCTGGCCCACCGCTCGAGGATAAG
TGCGGGGTCCCGTGCGCATGCATGAGTGTGATGTATACCGTAGAGACCGC
CCCCCATAGTATTCTTTACGATTGTGCGTGCGATTTTGGGCATCACTGCG
AATGAAAACGCAACGGCTCTTCGAGGTCAGGGAGCTGTGTTCGTTCGGCA
CTTTACTTCGGCGAGGGTGTTTGTTGGAGGTTGCATGCATTTGTTCAGGT
GTCTGCCGTCGATGTTGGGACTGTTTGTTGACACTAACGGTATTGGATTG
TGTGTTGTCTACCCGTGAAGTGCTAGGCAGCGTGTGAGAGCAACCACAGA
TACCCGGTTAGTTGTTATTGTTGGCCTTACCCCTCGGGGTAAGGTTTAAA
TAATTTATATCGGGCTTTCCTTTCCCCCCAGGGACATTCCTCCCCGGGGA
AATGTGTCATTAAAAAGAAAGGGTATCCCCCGAGACACACTTTGCCCCCG
GGGGGGTGTTTTCCGAAGTGAAAAATATCCCCCCGCCGGGAGTACCACAC
CGGTCTTTTCGGGTATGTGCGGAAATAACACGTGACATGCTTTTCATGTT
TTTGGAAGGAGGAGTAATGGTAAATAGGAGAAAGGGAACAATGTATACGA
AAACGTGTTGTATGTGTGCGACGTGACATATGTTTGACTTATTTGTGGTG
AGGGGAAAGGAAAAAGGGCTGTGGAGAGGGAAGGGCAAGTGGGGCTGAGA
TACTGCATGCAGAGAGGAAGGGAGACTTTGAGATGCTTACAAACTGAACC
ACCGCTTTCGTCGTTGGCGCTGCTGGTGCTCTTGTTTGCCATGTCGGGGT
TGTCGTGGACAGGCGAGTTCAGGCGGCTTCTCGGGGAGCAGGAGGAACGG
GGGCAGGATCGATTCAATCAAGGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig644:152549..161024-

>mRNA_P-littoralis_Contig644.46.1 ID=mRNA_P-littoralis_Contig644.46.1|Name=mRNA_P-littoralis_Contig644.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig644:152549..161024- (Pylaiella littoralis U1_48)
ATGTCGGGTGAAGTCGAGGAGGCAGCGCAACCTTCCGAGTCGGCGCCGCA
ACACCGGCAGCAAGACCAGCGGCAGCGCGTGGTATGTGATCGGAGAAAGA
CCAGAGTCGGCATTAGCAGCAAAGCCAAGGGTTCAAGTCAGCAATCCTCA
GCACAGCAGCAGCAGCAGCACCGGCGCCAACCCGGCACAACAGCAACGAG
TGTCGATGCCTCTTTCCGCCTAGCGGGGAGTATTCTCTTGAGACGTGCCC
TCACGAAGTCAAAGCACCGGACTTCTACGGGGAGTGAGGATGGGGGCGGG
GCAACGACGGGTTCATCGGGCAGGGGCTGGGATCACACCCCTATTGAGGA
AAAGAGCTGGTGTACCGCGGCAAATATGGGGACAAGAACACTTGCGTGCG
CATGGCCCCCGTGTCGTATGCTTTCATGA
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