mRNA_P-littoralis_Contig1166.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1166.16.1
Unique NamemRNA_P-littoralis_Contig1166.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1166.16.1 vs. uniprot
Match: A0A6H5JHD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.910e-34
Identity = 82/186 (44.09%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:    1 IRHKAELPPLTGTAGKKMEAQSRRNAGTVVGQAFLTPQQRQANSTARYKKKDKVSARTALHKQNHDRRATANPLKAFGHGTHGVSSVRDKLESISGVAYAGGGEGCEGIGSTPSAGKRKRRGRATSEETTEYTAAGSNSEKNNELASARRMGARTESRVCSACVFARVGREFLAERKHARKGKTIC 558
            +R    LPPLT  A +KMEA+ RR    VVGQ   T +QR   ST RYK KD+V+ +TA +K NHD+RA  N +  +G+GTHGV+++R KL +  G    G  +G  G  S        R+  A      EY A GSN++ N++LA+  RMG      VCS+C+ A VGR+FL + +HARKG  IC
Sbjct:   54 VRSHMGLPPLTNRAAEKMEARDRRGKKVVVGQLHRTEEQRTKASTDRYKNKDRVTTQTAANKANHDKRAKENKILPYGYGTHGVAALRKKL-AAEGEDVEGTADGESGRTSXXXXXXXXRK-EAGGTAIPEYNAGGSNTDNNDKLAADVRMGGTKTGGVCSSCLEAGVGRQFLVDAQHARKGAKIC 237
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1166.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHD0_9PHAE1.910e-3444.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1166contigP-littoralis_Contig1166:52242..52805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size566
Hectar predicted targeting categoryother localisation
Exons1
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.8377743-CDS-P-littoralis_Contig1166:52241..528051680789484.8377743-CDS-P-littoralis_Contig1166:52241..52805Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 52242..52805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1166.16.1prot_P-littoralis_Contig1166.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1166 52242..52805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1166.16.1

>prot_P-littoralis_Contig1166.16.1 ID=prot_P-littoralis_Contig1166.16.1|Name=mRNA_P-littoralis_Contig1166.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp
IRHKAELPPLTGTAGKKMEAQSRRNAGTVVGQAFLTPQQRQANSTARYKK
KDKVSARTALHKQNHDRRATANPLKAFGHGTHGVSSVRDKLESISGVAYA
GGGEGCEGIGSTPSAGKRKRRGRATSEETTEYTAAGSNSEKNNELASARR
MGARTESRVCSACVFARVGREFLAERKHARKGKTICPE
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mRNA from alignment at P-littoralis_Contig1166:52242..52805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1166.16.1 ID=mRNA_P-littoralis_Contig1166.16.1|Name=mRNA_P-littoralis_Contig1166.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig1166:52242..52805+ (Pylaiella littoralis U1_48)
ATCCGTCACAAGGCTGAATTACCTCCGCTCACCGGCACAGCGGGTAAGAA
AATGGAGGCCCAATCGAGGCGCAACGCGGGCACCGTTGTCGGGCAAGCGT
TCCTGACACCGCAACAGAGACAGGCGAATTCGACGGCGCGCTATAAGAAG
AAAGACAAAGTTTCCGCCCGAACCGCACTCCACAAGCAGAACCACGATCG
GAGGGCGACGGCAAACCCCCTGAAGGCGTTTGGCCACGGAACACATGGCG
TGTCATCGGTACGAGACAAGCTAGAGTCAATCAGCGGCGTCGCATACGCC
GGGGGAGGTGAGGGTTGCGAGGGGATAGGGTCTACACCGAGTGCCGGGAA
GAGGAAGCGGAGGGGGAGGGCTACGAGTGAGGAAACCACGGAATACACGG
CTGCAGGGAGCAACTCGGAGAAGAACAACGAGCTCGCATCTGCACGTCGA
ATGGGAGCCCGAACCGAGAGCAGGGTGTGTTCGGCTTGCGTCTTCGCTCG
TGTGGGCCGTGAATTCCTTGCGGAGAGGAAACACGCGCGGAAGGGGAAGA
CGATTTGTCCCGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1166:52242..52805+

>mRNA_P-littoralis_Contig1166.16.1 ID=mRNA_P-littoralis_Contig1166.16.1|Name=mRNA_P-littoralis_Contig1166.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig1166:52242..52805+ (Pylaiella littoralis U1_48)
ATCCGTCACAAGGCTGAATTACCTCCGCTCACCGGCACAGCGGGTAAGAA
AATGGAGGCCCAATCGAGGCGCAACGCGGGCACCGTTGTCGGGCAAGCGT
TCCTGACACCGCAACAGAGACAGGCGAATTCGACGGCGCGCTATAAGAAG
AAAGACAAAGTTTCCGCCCGAACCGCACTCCACAAGCAGAACCACGATCG
GAGGGCGACGGCAAACCCCCTGAAGGCGTTTGGCCACGGAACACATGGCG
TGTCATCGGTACGAGACAAGCTAGAGTCAATCAGCGGCGTCGCATACGCC
GGGGGAGGTGAGGGTTGCGAGGGGATAGGGTCTACACCGAGTGCCGGGAA
GAGGAAGCGGAGGGGGAGGGCTACGAGTGAGGAAACCACGGAATACACGG
CTGCAGGGAGCAACTCGGAGAAGAACAACGAGCTCGCATCTGCACGTCGA
ATGGGAGCCCGAACCGAGAGCAGGGTGTGTTCGGCTTGCGTCTTCGCTCG
TGTGGGCCGTGAATTCCTTGCGGAGAGGAAACACGCGCGGAAGGGGAAGA
CGATTTGTCCCGAA
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