mRNA_P-littoralis_Contig643.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig643.37.1
Unique NamemRNA_P-littoralis_Contig643.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig643.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig643contigP-littoralis_Contig643:150119..150616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size498
Hectar predicted targeting categorysignal anchor
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791342.4647765-UTR-P-littoralis_Contig643:150118..1502511680791342.4647765-UTR-P-littoralis_Contig643:150118..150251Pylaiella littoralis U1_48UTRP-littoralis_Contig643 150119..150251 +
1680791342.4898546-UTR-P-littoralis_Contig643:150602..1506161680791342.4898546-UTR-P-littoralis_Contig643:150602..150616Pylaiella littoralis U1_48UTRP-littoralis_Contig643 150603..150616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791342.4796731-CDS-P-littoralis_Contig643:150251..1506021680791342.4796731-CDS-P-littoralis_Contig643:150251..150602Pylaiella littoralis U1_48CDSP-littoralis_Contig643 150252..150602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig643.37.1prot_P-littoralis_Contig643.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig643 150252..150602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig643.37.1

>prot_P-littoralis_Contig643.37.1 ID=prot_P-littoralis_Contig643.37.1|Name=mRNA_P-littoralis_Contig643.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MLRIALLPDDGPMGEVHAERFGFVGGLGVGCNVGKTKKNQFDRWFTCFLT
AATERRFSCFLLVSSTTAALPVFFCCLLASCTAAAVVLPGRFVRLHCCQI
YKDENESNFFMIDRET*
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mRNA from alignment at P-littoralis_Contig643:150119..150616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig643.37.1 ID=mRNA_P-littoralis_Contig643.37.1|Name=mRNA_P-littoralis_Contig643.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig643:150119..150616+ (Pylaiella littoralis U1_48)
GGGGGGCTGGGGCTCTGTGTTTCAACTGTGTGGTTTGTTCAGCAGGTTTC
AACGGGCTGTGCTGTCGTATTCGTGATTCGATGCAGCAAGTCAGAGACGT
GACAGCGAGTACAAATGTACCATTGTCGTTGAAATGCTGCGAATCGCACT
ATTGCCCGATGATGGGCCGATGGGCGAAGTCCACGCGGAAAGGTTCGGTT
TTGTTGGAGGGTTGGGTGTAGGATGCAATGTTGGGAAGACGAAGAAAAAT
CAATTCGATCGATGGTTCACTTGTTTTCTTACTGCAGCTACAGAGAGGCG
TTTTTCTTGCTTCCTTCTCGTGTCAAGTACTACCGCCGCACTGCCGGTTT
TTTTTTGTTGCCTTCTCGCGTCATGTACTGCTGCTGCCGTGGTACTGCCG
GGCCGATTTGTTCGGCTGCATTGTTGTCAAATTTATAAGGATGAAAATGA
GAGCAATTTTTTCATGATCGATAGGGAAACCTAACCTACCCTTGAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig643:150119..150616+

>mRNA_P-littoralis_Contig643.37.1 ID=mRNA_P-littoralis_Contig643.37.1|Name=mRNA_P-littoralis_Contig643.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig643:150119..150616+ (Pylaiella littoralis U1_48)
ATGCTGCGAATCGCACTATTGCCCGATGATGGGCCGATGGGCGAAGTCCA
CGCGGAAAGGTTCGGTTTTGTTGGAGGGTTGGGTGTAGGATGCAATGTTG
GGAAGACGAAGAAAAATCAATTCGATCGATGGTTCACTTGTTTTCTTACT
GCAGCTACAGAGAGGCGTTTTTCTTGCTTCCTTCTCGTGTCAAGTACTAC
CGCCGCACTGCCGGTTTTTTTTTGTTGCCTTCTCGCGTCATGTACTGCTG
CTGCCGTGGTACTGCCGGGCCGATTTGTTCGGCTGCATTGTTGTCAAATT
TATAAGGATGAAAATGAGAGCAATTTTTTCATGATCGATAGGGAAACCTA
A
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