prot_P-littoralis_Contig643.39.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig643.39.2
Unique Nameprot_P-littoralis_Contig643.39.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length419
Homology
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BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Match: D7FR64_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR64_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 4.650e-22
Identity = 48/70 (68.57%), Postives = 53/70 (75.71%), Query Frame = 0 
Query:   92 DDCAICLSPLHESGGGPQEEQLEVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVERGLTPEPVRRAE 161
            +DCAICLSPL   GG   E    VYTI+ C H FHR+CL ANRA GRTTCPCCRGE+ERGL+P P RRAE
Sbjct:   80 EDCAICLSPLRRPGGSVPERP--VYTIRACEHNFHRDCLVANRAEGRTTCPCCRGEIERGLSPAPTRRAE 147
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BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.020e-15
Identity = 42/80 (52.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   91 EDDCAICLSPLHESGGGPQEEQL--EVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVERGLTPEPVRRAEMARASRE 168
            E DC ICL PL  S   P       EVY IQ C H FHR CL  NR AG   CPCCRG +ERGLTP P      A A R+
Sbjct:   30 EGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQ 109
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BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.740e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 0 
Query:   94 CAICLSPLHESGGGPQEEQLEVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVERGLTPEPVRRAEMAR 164
            CAICLSPL +  G  +E    VYT++ C+H FHR CL  NR AG T CP CRG++ERGLTPE       AR
Sbjct:  102 CAICLSPLKKPSGAKKE----VYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERKAR 168
[Close]
BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.680e-14
Identity = 42/80 (52.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   91 EDDCAICLSPLHESGGGPQEEQL--EVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVERGLTPEPVRRAEMARASRE 168
            E DC ICL PL  S   P       EVY IQ C H FHR CL  NR AG   CPCCRG +ERGLTP P      A A R+
Sbjct:  205 EGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR64_ECTSI4.650e-2268.57RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G207_ECTSI2.020e-1552.50RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JHS7_9PHAE8.740e-1554.93RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE1.680e-1452.50RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 336..370
NoneNo IPR availableCOILSCoilCoilcoord: 212..252
NoneNo IPR availableCOILSCoilCoilcoord: 285..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 373..394
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..418
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 399..418
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 345..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 87..154
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 94..144
e-value: 1.6E-4
score: 31.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 92..145
e-value: 8.8E-7
score: 29.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 94..145
score: 11.264779
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 55..151
e-value: 1.4E-11
score: 45.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig643contigP-littoralis_Contig643:162448..165199 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig643.39.2mRNA_P-littoralis_Contig643.39.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig643 162448..165199 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig643.39.2 ID=prot_P-littoralis_Contig643.39.2|Name=mRNA_P-littoralis_Contig643.39.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=419bp
GFQTSAVVTRSMARAAAAAAPPPSAPRMMTRSAARSQSSGTPPRSSAAAA
AAAAAPVPRRAAAATNAVVASLKRSAEDSARSSAQVADFEEDDCAICLSP
LHESGGGPQEEQLEVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVER
GLTPEPVRRAEMARASREEEIGTRADWLQAIFRAQREARARAERETAAEE
SAREASRRGRLLAEQEAARQRAEWQVQQWARAEQAERVRQEEAAQRARWQ
AQQQEAARRHAEWRALQARALEAERVRQGAAAARRARWQAQQQQQEEAAA
AARRQAEYQAQQRARAAAAAAAQAEKDRQKAWQAHQQAAVQQRAREEQQA
ERYRQAHAAMQQRARDEQQAERARQSAAQALQWQAQQRQRAQWSAQLRAH
AERADRETQYAGRDEGRW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD