mRNA_P-littoralis_Contig643.39.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig643.39.2
Unique NamemRNA_P-littoralis_Contig643.39.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Match: D7FR64_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR64_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 4.650e-22
Identity = 48/70 (68.57%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:  274 DDCAICLSPLHESGGGPQEEQLEVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVERGLTPEPVRRAE 483
            +DCAICLSPL   GG   E    VYTI+ C H FHR+CL ANRA GRTTCPCCRGE+ERGL+P P RRAE
Sbjct:   80 EDCAICLSPLRRPGGSVPERP--VYTIRACEHNFHRDCLVANRAEGRTTCPCCRGEIERGLSPAPTRRAE 147
[Close]
BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Match: D7G207_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G207_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 2.020e-15
Identity = 42/80 (52.50%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:  271 EDDCAICLSPLHESGGGPQEEQL--EVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVERGLTPEPVRRAEMARASRE 504
            E DC ICL PL  S   P       EVY IQ C H FHR CL  NR AG   CPCCRG +ERGLTP P      A A R+
Sbjct:   30 EGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQ 109
[Close]
BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Match: A0A6H5JHS7_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHS7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 8.740e-15
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  280 CAICLSPLHESGGGPQEEQLEVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVERGLTPEPVRRAEMAR 492
            CAICLSPL +  G  +E    VYT++ C+H FHR CL  NR AG T CP CRG++ERGLTPE       AR
Sbjct:  102 CAICLSPLKKPSGAKKE----VYTVRVCQHMFHRVCLVENRRAGNTGCPYCRGDLERGLTPEATAAERKAR 168
[Close]
BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Match: A0A6H5L4L7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.680e-14
Identity = 42/80 (52.50%), Postives = 44/80 (55.00%), Query Frame = 1 
Query:  271 EDDCAICLSPLHESGGGPQEEQL--EVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVERGLTPEPVRRAEMARASRE 504
            E DC ICL PL  S   P       EVY IQ C H FHR CL  NR AG   CPCCRG +ERGLTP P      A A R+
Sbjct:  205 EGDCVICLCPLRSSSQQPXXXXXXXEVYQIQACGHKFHRACLAENRRAGNIGCPCCRGPLERGLTPTPTAAERRATADRQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig643.39.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR64_ECTSI4.650e-2268.57RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G207_ECTSI2.020e-1552.50RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JHS7_9PHAE8.740e-1554.93RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L4L7_9PHAE1.680e-1452.50RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig643contigP-littoralis_Contig643:162448..165199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog77586.LPERR01G16160.1
PFAMszf-RING_2
Model size1257
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorymitochondrion
Exons2
Evalue1.64e-05
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,389BY@33090|Viridiplantae,3GYDI@35493|Streptophyta,3M86U@4447|Liliopsida,3ISBQ@38820|Poales
DescriptionRing finger domain
Cds size1257
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791342.3842432-CDS-P-littoralis_Contig643:162447..1633381680791342.3842432-CDS-P-littoralis_Contig643:162447..163338Pylaiella littoralis U1_48CDSP-littoralis_Contig643 162448..163338 -
1680791342.3982978-CDS-P-littoralis_Contig643:164833..1651991680791342.3982978-CDS-P-littoralis_Contig643:164833..165199Pylaiella littoralis U1_48CDSP-littoralis_Contig643 164834..165199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig643.39.2prot_P-littoralis_Contig643.39.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig643 162448..165199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig643.39.2

>prot_P-littoralis_Contig643.39.2 ID=prot_P-littoralis_Contig643.39.2|Name=mRNA_P-littoralis_Contig643.39.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=419bp
GFQTSAVVTRSMARAAAAAAPPPSAPRMMTRSAARSQSSGTPPRSSAAAA
AAAAAPVPRRAAAATNAVVASLKRSAEDSARSSAQVADFEEDDCAICLSP
LHESGGGPQEEQLEVYTIQGCRHAFHRECLTANRAAGRTTCPCCRGEVER
GLTPEPVRRAEMARASREEEIGTRADWLQAIFRAQREARARAERETAAEE
SAREASRRGRLLAEQEAARQRAEWQVQQWARAEQAERVRQEEAAQRARWQ
AQQQEAARRHAEWRALQARALEAERVRQGAAAARRARWQAQQQQQEEAAA
AARRQAEYQAQQRARAAAAAAAQAEKDRQKAWQAHQQAAVQQRAREEQQA
ERYRQAHAAMQQRARDEQQAERARQSAAQALQWQAQQRQRAQWSAQLRAH
AERADRETQYAGRDEGRW*
back to top

mRNA from alignment at P-littoralis_Contig643:162448..165199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig643.39.2 ID=mRNA_P-littoralis_Contig643.39.2|Name=mRNA_P-littoralis_Contig643.39.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2752bp|location=Sequence derived from alignment at P-littoralis_Contig643:162448..165199- (Pylaiella littoralis U1_48)
GGTTTTCAAACCTCGGCGGTTGTGACACGGTCCATGGCGCGGGCGGCCGC
GGCAGCAGCGCCCCCTCCCAGCGCACCCAGGATGATGACGCGGTCAGCTG
CCAGATCGCAGTCCTCGGGAACGCCGCCGCGGTCTTCGGCGGCAGCGGCA
GCAGCAGCAGCGGCACCGGTGCCGAGGAGAGCAGCCGCCGCAACAAACGC
CGTCGTCGCTTCGCTCAAGAGGAGCGCCGAAGACAGCGCCCGGTCCAGCG
CGCAAGTCGCGGATTTCGAGGAGGACGACTGCGCCATCTGCCTGAGCCCG
TTGCACGAATCCGGTGGAGGTCCGCAGGAGGAACAGCTAGAAGTTTACAC
CATCCAAGGCTGCCGGGTGAGTCGACTGCGAATATGCGACAACGGCAGTG
GTACGTCGTATGTATACAAGCTAATCGTGGGTGTTGTGTGTCTCCTTTCG
GCCTCGACCGTATTTGTTTTTTTTGTAGTCCTGTTGTTGTTTGGCGTGAT
TAGTTGTTTCATGTGATTGGACCCCAACAAGTATCGTATAACTCACGCAC
GTGTGTACCTGTGTCATACACACCCGTTTCGCTAGCAACCACGCTGTGCG
AGATCTCTGTTTCGCGCCATGGGAGCGCTGGGGGGCGCGAGGGGGGGTGG
GGGTAATACGCAAAATCTGAAGTAAAGGAAGCGCTTGTTAGGTACGAATG
TTGATTCATAGATTGTGTGGTGGAAGTACCCCCGAAAATATATTAGAGAT
ACCCCCACACACACACAACCACAGCGTATTTTTTTTCTGGTGAGAGGATC
GCCATCAAACCACGAAGACTGCTGCACGCCCCACACCTTTAGCTTCTCCG
CAGTTTATTTTGTTTGCTGTTGCTGCTGTGTGTGTGTTGTCGTCCCATTT
GTTCTGGGCAGCAGTCTACACCTTTCGGTATGATGTGGGTGCTTCAGCCG
GCGTCACACAGGAAGAAGGTCACGCACGAGCTTTCTCACTTTCTTGTTTT
TTTTTATTATTGCCCATGCCTTTCCTCCTGCGGTGCTTGCCTTTGGTTTC
TAGTGTGAGTCGGGGTCAACAACCCCTTCCCTCTGTTTACTCACGAGTGA
AATCGCTTTCCCACTGAAAAGTTGCAAGAAAACCTCTCTCAGAGAGAACC
GAACCTGCATCCCTACTGCTAGAAGGTTGACGTGGGAACCACTAGACCTG
TGGGCTTCTTCTTGGGTCGAGGATGATCGATGTATGACACATGCTCTAGA
GCTGCTGACACGGATCGATCATGCTCCACACACCAAGACCCCCACGAGAG
TTTCAACGATGTAGCTGCGGAGAAGCCCAAGAGATGTGATGTGGGGTGAG
GCTGTAGCATGTAGCCTCGGGGCTTTAGTGGCGATCCGGTGACAACGCGG
GAAGGGCGATGCGGTTCGGTTCCGTGTTGTGCGTTTCGTATTTTTTTGGT
CGCGCAGGGGGCACACAGACAAGGCACAGATGTGGGTCAGGTTTGGAAAT
CCACGTATCCCAAAAAATCCGCACCCACAACATCCGGCCTGAACGTATGT
GTATCGTAGCGTGCCAATAAAGCTGTATACTTTCGCGATTTTCTTCTGTT
TTTTTTTTTTTGCATGCGCAATGATGTTCGAAATACGTACGTATGATATG
TACGCATGCGAAGGAGGTCTCCTTCACGGGGAGTGCATTCCCACGGGACG
TCTGCCGAGGACGGAATCCCTCTTTTTCACACTCAGCGGGTTCGGGTGGT
ACAATATTTATCTAATTATTTATTTTATTTCCCCGCCACCGCGCGCACCG
CTTCTCTCATGTTTCTGCTCGGCGGTTCGATTCAAACATTTTTTTTGTTT
TTCCTTCCAAGCACGCCTTCCACCGAGAGTGTCTGACGGCCAACAGAGCG
GCGGGACGCACCACCTGTCCGTGCTGCCGGGGCGAAGTGGAGAGAGGCCT
CACGCCCGAGCCGGTGCGGCGGGCGGAGATGGCGAGGGCGTCGCGGGAGG
AGGAGATTGGCACCCGGGCGGACTGGCTGCAGGCCATATTCAGGGCCCAG
CGGGAGGCCAGGGCGCGGGCCGAGAGAGAGACGGCCGCCGAGGAATCCGC
GCGGGAAGCGAGCCGACGGGGAAGGCTGCTGGCCGAACAGGAGGCGGCAC
GCCAGCGGGCCGAGTGGCAGGTCCAGCAGTGGGCGCGCGCGGAGCAGGCC
GAGAGGGTCCGGCAGGAGGAGGCGGCCCAGCGAGCTCGGTGGCAGGCCCA
GCAGCAGGAGGCGGCCCGCCGGCACGCCGAGTGGCGGGCCCTGCAGGCGC
GCGCGCTGGAGGCGGAGAGGGTGCGGCAAGGAGCTGCGGCGGCCCGGCGA
GCCCGGTGGCAGGCCCAGCAGCAGCAGCAGGAGGAGGCGGCAGCGGCGGC
CCGCCGGCAAGCCGAGTATCAGGCCCAACAGCGGGCGCGCGCCGCCGCCG
CCGCCGCCGCGCAGGCAGAGAAGGACAGGCAGAAGGCCTGGCAGGCCCAC
CAGCAAGCGGCCGTGCAGCAGCGGGCGCGCGAGGAACAGCAGGCCGAGAG
ATACCGCCAGGCCCACGCGGCCATGCAGCAGCGGGCGCGCGATGAACAAC
AAGCCGAACGAGCCCGGCAGAGCGCCGCTCAAGCGCTGCAGTGGCAGGCC
CAGCAGCGCCAACGAGCCCAGTGGAGCGCGCAGCTGCGGGCGCACGCTGA
ACGGGCCGATAGGGAGACCCAATATGCCGGGCGAGACGAGGGCCGATGGT
GA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig643:162448..165199-

>mRNA_P-littoralis_Contig643.39.2 ID=mRNA_P-littoralis_Contig643.39.2|Name=mRNA_P-littoralis_Contig643.39.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1257bp|location=Sequence derived from alignment at P-littoralis_Contig643:162448..165199- (Pylaiella littoralis U1_48)
GGTTTTCAAACCTCGGCGGTTGTGACACGGTCCATGGCGCGGGCGGCCGC
GGCAGCAGCGCCCCCTCCCAGCGCACCCAGGATGATGACGCGGTCAGCTG
CCAGATCGCAGTCCTCGGGAACGCCGCCGCGGTCTTCGGCGGCAGCGGCA
GCAGCAGCAGCGGCACCGGTGCCGAGGAGAGCAGCCGCCGCAACAAACGC
CGTCGTCGCTTCGCTCAAGAGGAGCGCCGAAGACAGCGCCCGGTCCAGCG
CGCAAGTCGCGGATTTCGAGGAGGACGACTGCGCCATCTGCCTGAGCCCG
TTGCACGAATCCGGTGGAGGTCCGCAGGAGGAACAGCTAGAAGTTTACAC
CATCCAAGGCTGCCGGCACGCCTTCCACCGAGAGTGTCTGACGGCCAACA
GAGCGGCGGGACGCACCACCTGTCCGTGCTGCCGGGGCGAAGTGGAGAGA
GGCCTCACGCCCGAGCCGGTGCGGCGGGCGGAGATGGCGAGGGCGTCGCG
GGAGGAGGAGATTGGCACCCGGGCGGACTGGCTGCAGGCCATATTCAGGG
CCCAGCGGGAGGCCAGGGCGCGGGCCGAGAGAGAGACGGCCGCCGAGGAA
TCCGCGCGGGAAGCGAGCCGACGGGGAAGGCTGCTGGCCGAACAGGAGGC
GGCACGCCAGCGGGCCGAGTGGCAGGTCCAGCAGTGGGCGCGCGCGGAGC
AGGCCGAGAGGGTCCGGCAGGAGGAGGCGGCCCAGCGAGCTCGGTGGCAG
GCCCAGCAGCAGGAGGCGGCCCGCCGGCACGCCGAGTGGCGGGCCCTGCA
GGCGCGCGCGCTGGAGGCGGAGAGGGTGCGGCAAGGAGCTGCGGCGGCCC
GGCGAGCCCGGTGGCAGGCCCAGCAGCAGCAGCAGGAGGAGGCGGCAGCG
GCGGCCCGCCGGCAAGCCGAGTATCAGGCCCAACAGCGGGCGCGCGCCGC
CGCCGCCGCCGCCGCGCAGGCAGAGAAGGACAGGCAGAAGGCCTGGCAGG
CCCACCAGCAAGCGGCCGTGCAGCAGCGGGCGCGCGAGGAACAGCAGGCC
GAGAGATACCGCCAGGCCCACGCGGCCATGCAGCAGCGGGCGCGCGATGA
ACAACAAGCCGAACGAGCCCGGCAGAGCGCCGCTCAAGCGCTGCAGTGGC
AGGCCCAGCAGCGCCAACGAGCCCAGTGGAGCGCGCAGCTGCGGGCGCAC
GCTGAACGGGCCGATAGGGAGACCCAATATGCCGGGCGAGACGAGGGCCG
ATGGTGA
back to top