mRNA_P-littoralis_Contig642.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig642.22.1
Unique NamemRNA_P-littoralis_Contig642.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: A0A6H5K5N4_9PHAE (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5N4_9PHAE)

HSP 1 Score: 608 bits (1567), Expect = 1.120e-207
Identity = 318/394 (80.71%), Postives = 345/394 (87.56%), Query Frame = 3 
Query:  129 MKLRALSACALALPSACVAFLSSAP-----SSPHMIRRRPQS----LSMTVTGKAPEDTTVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAVVEGAEMVVADVTDQASVDAALAGRKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKILPGQFEDPAELAKIGKYYAVEDMLTTDPSEK---FGTVTLGEHYKRIAVEGNDYDPYTTLFASKKMPSAMIGNMLGSAQEVEEEE 1274
            MK RALSACAL  P+AC+AFLSS+P     +SP M RRR QS    L MTVT KA +D TV VAGSTGYIGKFVA+ECV+RGYKTIALTRNPDAVVEGAEMV+ DVTD ASVDAALAGRK+D +VSCLASRSGTKSDSFAIDYQATLNCLE AKKEG AHFVMLSAFCVKKP LQFQKAKLKFE +LV AG AGEIGYSIVRPTAFFKSVSGQLEVVQ GAPFVVFGDGTMCKCNPIAEADLATYLVDCITD++K N I N+GGPDDGLTMTAQGKLLFEAVGK PKI+  PVLLFD+IIG LD +A ILP QFEDPAELAKIGKYYAVEDMLT DPSEK   FGTVTLG+HYKRIAVEGNDYDPYTTLFA KK P+++I +++G+  +VEEE+
Sbjct:    1 MKFRALSACALVCPTACLAFLSSSPLPRVGNSPDMRRRRSQSTSTSLDMTVT-KAAKDMTVAVAGSTGYIGKFVALECVRRGYKTIALTRNPDAVVEGAEMVLTDVTDPASVDAALAGRKIDALVSCLASRSGTKSDSFAIDYQATLNCLETAKKEGAAHFVMLSAFCVKKPILQFQKAKLKFEEKLVEAGNAGEIGYSIVRPTAFFKSVSGQLEVVQGGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDKSKNNNIFNIGGPDDGLTMTAQGKLLFEAVGKEPKILKVPVLLFDVIIGALDLLAGILPKQFEDPAELAKIGKYYAVEDMLTVDPSEKATRFGTVTLGQHYKRIAVEGNDYDPYTTLFAGKKNPTSVIASLVGTGVDVEEEQ 393
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: A0A835ZBC9_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBC9_9STRA)

HSP 1 Score: 440 bits (1131), Expect = 1.910e-143
Identity = 222/319 (69.59%), Postives = 256/319 (80.25%), Query Frame = 3 
Query:  267 PEDTTVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAVVEGAEMVVADVTDQASVDA-ALAGRKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEA--GEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKILPGQFEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFASKK 1214
            P DTTV+VAG+TGYIGKFV  ECV++GYKT+A+TRNPDA  EGA  VVADVT+   +   A  GR VD ++SCLASRSGTKSDS+A+DYQAT NCL+  +K G+ HFV+LSA+CV+KP LQFQ AKL+FE ELVAA +A    + YSIVRPTAFFKSVSGQLEVV+ G PFVVFGDGTMCKCNPIAE DLA Y+VD + D  + NK+LN+GGPD+G TM  QG+LL EA G  P I+ APV LFD IIGGLDF    LP  FED AELA+IGKYYAVEDMLTT PSEKFGT+TL EHY+RIA EGNDYDPYTT+FA  K
Sbjct:    9 PADTTVLVAGATGYIGKFVVQECVRQGYKTLAVTRNPDAKFEGATTVVADVTNPDELQKLAFDGRSVDAVISCLASRSGTKSDSWAVDYQATANCLQAGQKAGIKHFVLLSAYCVRKPLLQFQLAKLQFEKELVAASKAETNPVNYSIVRPTAFFKSVSGQLEVVKGGFPFVVFGDGTMCKCNPIAEVDLARYMVDSMRDPERDNKVLNLGGPDEGYTMAQQGELLAEACGVKPNIMKAPVGLFDAIIGGLDFFGNFLPS-FEDAAELARIGKYYAVEDMLTTQPSEKFGTITLKEHYERIAREGNDYDPYTTMFAKPK 326
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: A0A7S3Y013_HETAK (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y013_HETAK)

HSP 1 Score: 385 bits (988), Expect = 1.930e-121
Identity = 202/322 (62.73%), Postives = 246/322 (76.40%), Query Frame = 3 
Query:  267 PEDTTVVVAGSTGYIGKFVAMECVKRGYK-TIALTRNP----DAVVEGAEMVVADVTDQASVDAALAGRKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVG-KPPKIVNAPVLLFDLIIGGLDFMAKILPGQFEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFASKK 1214
            P+D+TV+V G+TGYIGKFV  ECV+RG+K  IA+TR+     +    GA + VADVT+  S+  A  G +VD ++SCLASRSGTKSDSF IDYQATLN LE A+     HFV+LSAFCV+KPTLQFQ AKL+FE  L +A +   I +SIVRPTAFFKSVSGQLEVVQ+GAPFV FGDGTMCKCNPIAE+DLA Y+V+CI +  K NK+LN+GGPD+GLTM  QG++L EA G   PK   AP++LFD IIG L ++ +   G  ED AELA+IGKYYAVEDMLT  P EK+G +TL +HY+RIAVEG +YDPYTT+ A  K
Sbjct:   63 PKDSTVLVVGATGYIGKFVVQECVRRGFKKVIAVTRSEPQGKEEYFNGANIKVADVTNPESIKTAFEGEQVDAVISCLASRSGTKSDSFLIDYQATLNSLEAARAAKAKHFVLLSAFCVRKPTLQFQLAKLQFEKALRSADD---ITHSIVRPTAFFKSVSGQLEVVQAGAPFVYFGDGTMCKCNPIAESDLAEYMVNCIEEVEKRNKVLNLGGPDEGLTMRQQGEILAEACGIDNPKFFGAPIVLFDWIIGALAWLGQWSAGA-EDAAELARIGKYYAVEDMLTEKPEEKYGKITLRQHYERIAVEGQEYDPYTTMLAVPK 380
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: A0A7R9ZKM2_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKM2_9STRA)

HSP 1 Score: 374 bits (960), Expect = 1.260e-117
Identity = 196/325 (60.31%), Postives = 240/325 (73.85%), Query Frame = 3 
Query:  285 VVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAV------------VEGAEMVVADVTDQASVDAALAG-----RKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKILPGQ-FEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFA 1205
            VVAG+TGYIGK V  E V++GYKTIAL R+ D V             +GA++V  DV D A +  AL G      K++ ++SCLASRSG K D++AIDYQAT NCL+        HFV+LSAFCVK P LQFQ+AKLKFE++L A  +   + YSIVRPTAFFKSVSGQLEVVQ GAPFV+FGDG + +CNPIAEADLATYL+DCI D+++ N ILN+GGPD+ LTM  QG++LF++VGK P    AP+ LFD II  L ++A     + FE+ AEL +IGKYYAVEDMLTT+PSEKFGT+TL EHY RIAVEG +YDPYTT+FA
Sbjct:   36 VVAGATGYIGKSVVRESVRQGYKTIALVRSKDKVESNKGKALYGQFFDGAQIVECDVCDPAQLTKALEGIKSESGKIESVISCLASRSGIKKDAYAIDYQATKNCLDAGMANDARHFVLLSAFCVKNPWLQFQQAKLKFESDLEAQDK---MTYSIVRPTAFFKSVSGQLEVVQQGAPFVMFGDGEVTRCNPIAEADLATYLIDCIADKSRENAILNLGGPDEPLTMKTQGEMLFQSVGKEPNFFFAPLWLFDAIIDSLQWVADTFSSEKFENAAELGRIGKYYAVEDMLTTEPSEKFGTITLQEHYDRIAVEGQEYDPYTTMFA 357
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: B8BXU7_THAPS (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU7_THAPS)

HSP 1 Score: 377 bits (967), Expect = 4.370e-117
Identity = 201/356 (56.46%), Postives = 251/356 (70.51%), Query Frame = 3 
Query:  273 DTTVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAV------------VEGAEMVVADVTDQASVDAALA------GRKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKILPGQ-FEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFASKKMPSAMIGNMLGSAQEVEEEEKAT 1283
            D   V+AG+TGYIGK    E V++GYKT+AL R+   V             EGAE+V  DV D   +  AL         K+D +VSCLASRSG K D++AIDYQATLNCLE  +  G  HFV+LSAFCVK P LQFQ+AKLKFE+ L A  +   + YSIVRPTAFFKSVSGQLEV+QSGAPFV+FGDG + +CNPI+EADLATYL+DCI D+++ NKI+N+GGPD+ LTM  QG++L+ ++GK P    AP+ LFD+II  L ++A     + FE+ AEL +IGKYYAVEDMLTTDP EKFGT+TL EHY +IAVEG +YDPYTT+FA  K P+           +VEE+EK +
Sbjct:  132 DKVAVIAGATGYIGKSTVRESVRQGYKTVALVRDKKKVESDEGKMLYGQFFEGAELVECDVCDAEKLTEALKDISDQYNGKIDAVVSCLASRSGIKKDAYAIDYQATLNCLESGRAVGARHFVLLSAFCVKNPWLQFQQAKLKFESALTAQSD---MSYSIVRPTAFFKSVSGQLEVIQSGAPFVMFGDGEVTRCNPISEADLATYLIDCIADKSRLNKIINLGGPDEPLTMKKQGEMLYASIGKEPNFFYAPLWLFDVIIDSLQWVADTFNSEKFENAAELGRIGKYYAVEDMLTTDPEEKFGTMTLQEHYDKIAVEGQEYDPYTTMFA--KAPT-----------KVEEKEKVS 471
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: A0A1Z5J6R6_FISSO (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6R6_FISSO)

HSP 1 Score: 372 bits (956), Expect = 1.130e-116
Identity = 194/356 (54.49%), Postives = 250/356 (70.22%), Query Frame = 3 
Query:  273 DTTVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAV------------VEGAEMVVADVTDQASVDAALAG-----RKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKILPGQ-FEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFASKKMPSAMIGNMLGSAQEVEEEEKATV 1286
            + T ++AG+TGYIGK    E V++GYKT AL R+P  +             EGAE+V  DVT++A +    A      +K+D +VSCLASRSG K D++ IDYQATLNCLE  +  G  HFV+LSAFCVK P LQFQ+AKLKFE    A  E  ++ +SIVRPTAFFKSVSGQLEV+QSGAP+V FGDG + +CNPIAE+DLATYL+DC+TD+T+  +I+N+GGPD+ LTM  QG++LF+A G  P    APV +FD++I  L F+A I   +  E+ AE  +IGKYYAVEDMLTTDPSEK+GT+TL EHY RIA EG +YDPYTT+F+  ++         G+ + VE +E A V
Sbjct:   40 EKTAIIAGATGYIGKSCVREAVRQGYKTYALVRDPQKLETKEGQVSFAPFFEGAEIVKCDVTNEADLQKVFADITADRQKIDAIVSCLASRSGIKKDAYLIDYQATLNCLEAGRAVGAGHFVLLSAFCVKNPWLQFQQAKLKFE---AALQEQTDMTWSIVRPTAFFKSVSGQLEVIQSGAPYVAFGDGEVTRCNPIAESDLATYLLDCVTDKTRHQRIINLGGPDEPLTMKMQGEMLFKATGMEPNFAFAPVWIFDVVINTLQFLADITGSEKLENAAETGRIGKYYAVEDMLTTDPSEKYGTITLQEHYNRIAKEGQEYDPYTTMFSRNRIRKD------GNTKLVEAKESAMV 386
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: A0A448ZEL1_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEL1_9STRA)

HSP 1 Score: 368 bits (944), Expect = 3.350e-115
Identity = 198/341 (58.06%), Postives = 248/341 (72.73%), Query Frame = 3 
Query:  237 SLSMTVTGKAPEDTTVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAV------------VEGAEMVVADVTDQASVDAALAGRKVDG-----MVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKILPGQ-FEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFA 1205
            SLSM+ +    E  T ++AG+TGYIGK V  E V++GYKTIAL R+ + V             EGAE++  DV D A++   +   K DG     ++SCLASRSG K D++AIDYQAT NCL+     G  HFV+LSAFC K P LQFQ+AKLKFE +LVAA +  +I ++IVRPTAFFKSVSGQLEVVQ GAPFV+FGDG + +CNPIAEADLATYLVD ITDE++ N+ +++GGPD+ LTM  QG++LF+AVGK      AP+ LFD+II  L +++     + FE+ AEL +IGKYYAVEDMLTTDP EKFGT+TL EHY RIAVEG +YDPYTT+FA
Sbjct:   26 SLSMS-SASVGEGKTAIIAGATGYIGKSVVRESVRQGYKTIALVRDSEKVNNKQGQALYGQFFEGAEVIECDVCDPAALTKTMEKIKADGGDIEAVISCLASRSGIKKDAYAIDYQATKNCLDSGIATGARHFVLLSAFCCKNPWLQFQQAKLKFEADLVAAQD--KITHTIVRPTAFFKSVSGQLEVVQQGAPFVMFGDGKVTRCNPIAEADLATYLVDSITDESRLNRNIDLGGPDEPLTMLKQGEMLFDAVGKETNFFFAPLWLFDVIIDSLQWVSDTFNSEKFENAAELGRIGKYYAVEDMLTTDPDEKFGTITLQEHYDRIAVEGQEYDPYTTMFA 363
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: K0SDG7_THAOC (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SDG7_THAOC)

HSP 1 Score: 366 bits (940), Expect = 3.960e-113
Identity = 194/355 (54.65%), Postives = 249/355 (70.14%), Query Frame = 3 
Query:  273 DTTVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAV------------VEGAEMVVADVTDQASVDAAL-------AGRKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKILPGQ-FEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFASKK--MPSAMIGNMLGSAQEVEEE 1271
            D   VVAG+TGYIGK    E V++GYKTIAL R+   V             EGAE+   DV D   +  A        +  K+D ++SCLASRSG K D++AIDYQATLNCLE  +     HFV+LSAFCVK P LQFQ+AKLKFE  L A  +   + +SIVRPTAFFKSVSGQLEV+Q GAPFV+FGDG + +CNPI+EADLATYL+DCI D+++ NKI+N+GGPD+ LTM  QG++L++AVGK P    AP+ LFD II  L +++     + FE+ AEL +IGKYYAVEDMLTTDP EKFGT+TL EHY +IAVEG +YDPYTT+FA+ K  +  A++ +   + +E++ +
Sbjct:   92 DKIAVVAGATGYIGKSTVRESVRQGYKTIALVRDRKKVESEEGKMLYGTFFEGAEIFECDVCDADKLTEAFREISSKSSSGKIDAVISCLASRSGIKKDAYAIDYQATLNCLESGRAVDARHFVLLSAFCVKNPWLQFQQAKLKFEAALEAQND---MTWSIVRPTAFFKSVSGQLEVIQQGAPFVMFGDGEVTRCNPISEADLATYLIDCIADKSRSNKIINLGGPDEPLTMKKQGEMLYKAVGKEPNFFYAPLWLFDTIIDSLQWVSDTFNSEKFENAAELGRIGKYYAVEDMLTTDPDEKFGTMTLQEHYDKIAVEGQEYDPYTTMFAAPKNAVSCAVLEDKSTTLREIDRQ 443
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: B7GC47_PHATC (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GC47_PHATC)

HSP 1 Score: 358 bits (920), Expect = 2.470e-111
Identity = 189/348 (54.31%), Postives = 238/348 (68.39%), Query Frame = 3 
Query:  222 RRRPQSLSMTVTGKAPEDTTVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAV--------VEGAEMVVADVTDQASVDAALA-------GRKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKILPG-QFEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFASKKM 1217
            R RP S  +T    A    T ++AG+TGYIGK    E +++GY T AL R+   +        ++GA ++  DV D+A +             RKV  +VSCLASRSG K D++ IDYQATLNCL   +  G  HFV+LSAFCVK P LQFQ+AKLKFE    A  E  ++ ++IVRPTAFFKSVSGQLEVVQ GAPFV+FGDG + +CNPIAEA+LA YL+D +TD T+ N + N+GGPD+ LTM  QG+++F AV K P    AP+ +FD+II GL F+A +    Q ED AE  +IGKYYAVEDMLTTDP EK+GTVTL EHY RIAVEG +YDPYTT+FA  ++
Sbjct:   26 RPRPVSSVLTAHTDASPLGTAIIAGATGYIGKSTVRESLRQGYDTFALVRDATKIDAKTKAEYMDGAHIIECDVCDEAQLQTVFREIADRTPDRKVQAVVSCLASRSGVKKDAYRIDYQATLNCLNAGRAVGARHFVLLSAFCVKNPWLQFQQAKLKFE---AALQEQSDMTWTIVRPTAFFKSVSGQLEVVQGGAPFVMFGDGQVTRCNPIAEAELAQYLMDSVTDPTRRNLVRNLGGPDEPLTMRKQGEMMFRAVDKEPNYFYAPLWIFDVIINGLQFLADVTRSEQLEDAAETGRIGKYYAVEDMLTTDPEEKYGTVTLQEHYNRIAVEGQEYDPYTTMFARARV 370
[Close]
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Match: A0A1E7FN43_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FN43_9STRA)

HSP 1 Score: 353 bits (906), Expect = 1.800e-109
Identity = 193/346 (55.78%), Postives = 239/346 (69.08%), Query Frame = 3 
Query:  228 RPQSLSMTVTGKAPEDTTVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAVV------------EGAEMVVADVTDQASVDAALAGRK-------VDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVAHFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKSVSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKILNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMA-KILPGQFEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGNDYDPYTTLFA 1205
            R  S S T T       T V+AG++GYIGK V  E V++G+KTIAL R+ + +             EGA++V  DVT+   +   L   K       +D +VSCLASRSG K D++AIDYQA+ NCL+     G  HFV+LSAFCVK P LQFQ+AKLKFE +L        + ++IVRPTAFFKSVSGQLEVVQ GAPFV+FGDG + +CNPIAE DLATYLVD ITD+++ N  +++GGPD+ LTM  QG++LF AVGK P  V AP+ LFD II  L ++A K    +FE+ AEL +IGKYYAVEDMLTT P EKFGT+TL EHY RIAVEG +YDPYTT+FA
Sbjct:   32 RMMSSSSTTTTMPGTGKTAVIAGASGYIGKSVVRESVRQGFKTIALVRDKEKITSKQGEAMYGQFFEGADVVECDVTNPDQLTKTLEKIKSEEGCDGIDAVVSCLASRSGIKKDAYAIDYQASKNCLDSGISVGARHFVLLSAFCVKNPWLQFQQAKLKFEADLQGQNT---MSHTIVRPTAFFKSVSGQLEVVQQGAPFVMFGDGKVTRCNPIAEGDLATYLVDSITDKSRENAAIDLGGPDEPLTMLKQGEMLFSAVGKKPFFVFAPLWLFDAIIDSLQWVADKFESEKFENAAELGRIGKYYAVEDMLTTKPEEKFGTITLQEHYDRIAVEGQEYDPYTTMFA 374
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig642.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5N4_9PHAE1.120e-20780.71Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A835ZBC9_9STRA1.910e-14369.59Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A7S3Y013_HETAK1.930e-12162.73Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A7R9ZKM2_9STRA1.260e-11760.31Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
B8BXU7_THAPS4.370e-11756.46Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A1Z5J6R6_FISSO1.130e-11654.49Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A448ZEL1_9STRA3.350e-11558.06Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
K0SDG7_THAOC3.960e-11354.65Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
B7GC47_PHATC2.470e-11154.31Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A1E7FN43_9STRA1.800e-10955.78Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig642contigP-littoralis_Contig642:66109..79238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPA5
Preferred nameDVR
PFAMsNAD_binding_10
Model size2988
Max annot lvl2759|Eukaryota
KEGG rclassRC01376
KEGG koko:K19073
KEGG ReactionR06272,R06896
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016020,GO:0016491,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0051744,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons8
Evalue1.6e-208
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Ec32 ortholog description3,8-divinyl protochlorophyllide a 8-vinyl reductase, putative chloroplast precursor
Ec32 orthologEc-15_004140.1
EC1.3.1.75
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
Cds size1167
COG categoryGM
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig642.22.1prot_P-littoralis_Contig642.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig642 66237..77545 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791341.6122248-UTR-P-littoralis_Contig642:66108..662361680791341.6122248-UTR-P-littoralis_Contig642:66108..66236Pylaiella littoralis U1_48UTRP-littoralis_Contig642 66109..66236 +
1680791341.731133-UTR-P-littoralis_Contig642:77545..792381680791341.731133-UTR-P-littoralis_Contig642:77545..79238Pylaiella littoralis U1_48UTRP-littoralis_Contig642 77546..79238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791341.6275296-CDS-P-littoralis_Contig642:66236..663311680791341.6275296-CDS-P-littoralis_Contig642:66236..66331Pylaiella littoralis U1_48CDSP-littoralis_Contig642 66237..66331 +
1680791341.6399379-CDS-P-littoralis_Contig642:69601..698391680791341.6399379-CDS-P-littoralis_Contig642:69601..69839Pylaiella littoralis U1_48CDSP-littoralis_Contig642 69602..69839 +
1680791341.6539578-CDS-P-littoralis_Contig642:71163..713281680791341.6539578-CDS-P-littoralis_Contig642:71163..71328Pylaiella littoralis U1_48CDSP-littoralis_Contig642 71164..71328 +
1680791341.6666048-CDS-P-littoralis_Contig642:72942..730621680791341.6666048-CDS-P-littoralis_Contig642:72942..73062Pylaiella littoralis U1_48CDSP-littoralis_Contig642 72943..73062 +
1680791341.6767476-CDS-P-littoralis_Contig642:74181..742621680791341.6767476-CDS-P-littoralis_Contig642:74181..74262Pylaiella littoralis U1_48CDSP-littoralis_Contig642 74182..74262 +
1680791341.6871972-CDS-P-littoralis_Contig642:74570..746751680791341.6871972-CDS-P-littoralis_Contig642:74570..74675Pylaiella littoralis U1_48CDSP-littoralis_Contig642 74571..74675 +
1680791341.70451-CDS-P-littoralis_Contig642:76017..762061680791341.70451-CDS-P-littoralis_Contig642:76017..76206Pylaiella littoralis U1_48CDSP-littoralis_Contig642 76018..76206 +
1680791341.7201343-CDS-P-littoralis_Contig642:77371..775451680791341.7201343-CDS-P-littoralis_Contig642:77371..77545Pylaiella littoralis U1_48CDSP-littoralis_Contig642 77372..77545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig642.22.1

>prot_P-littoralis_Contig642.22.1 ID=prot_P-littoralis_Contig642.22.1|Name=mRNA_P-littoralis_Contig642.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=389bp
MKLRALSACALALPSACVAFLSSAPSSPHMIRRRPQSLSMTVTGKAPEDT
TVVVAGSTGYIGKFVAMECVKRGYKTIALTRNPDAVVEGAEMVVADVTDQ
ASVDAALAGRKVDGMVSCLASRSGTKSDSFAIDYQATLNCLEGAKKEGVA
HFVMLSAFCVKKPTLQFQKAKLKFENELVAAGEAGEIGYSIVRPTAFFKS
VSGQLEVVQSGAPFVVFGDGTMCKCNPIAEADLATYLVDCITDETKGNKI
LNVGGPDDGLTMTAQGKLLFEAVGKPPKIVNAPVLLFDLIIGGLDFMAKI
LPGQFEDPAELAKIGKYYAVEDMLTTDPSEKFGTVTLGEHYKRIAVEGND
YDPYTTLFASKKMPSAMIGNMLGSAQEVEEEEKATVAK*
back to top

mRNA from alignment at P-littoralis_Contig642:66109..79238+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig642.22.1 ID=mRNA_P-littoralis_Contig642.22.1|Name=mRNA_P-littoralis_Contig642.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=13130bp|location=Sequence derived from alignment at P-littoralis_Contig642:66109..79238+ (Pylaiella littoralis U1_48)
CGCCGCATATCTCCCTCCTGTTGCACTGCTGCTCTGTTGTCTGTGGGCTG
ACGGGCTGGCCAAGGCAACTTTCGGTGCACACGTGCAAACACATAATCGG
ACGTACATAACAATTTCTGGAAGTATCCATGAAGTTGCGAGCCCTGTCTG
CCTGCGCCCTGGCGCTCCCATCAGCATGTGTGGCCTTTCTGTCTTCTGCG
CCTAGTTCGCCTCACATGATCAGGTAAATTGAATTTTTTTTCATGAGACG
TTTGAAGGCAAAGCTTGTCTCTGCTCTCGTGGACCCCTTCCTTTCCTACT
TCCTCTCTCTGGTGAACATACATGCCAGACAGGGGCTCATGTACCCATGC
CCACGAGAGACATCTACTCAATTAGACTGAGGAACGTGTGGAAGTGATAC
ACAACACCACGTCGGCCTGCACTGACCGCTGTTTCACAAGCGGAGAAAGG
ATCATGCTGTGGTTCGCTCTTCGCGGCCGGAAGCAGCGACGTGATCGTAT
CATTTCAAATCACGCCTACTGCTCTGTGAGAGCAGGTTACTTTATTTTGA
TACACATCATTTCCATTCTCGTAGTACTGTAGGTATTATACAAATAGATT
TGTTGTGGTTGTTGCGGCCCTTGGTCTTCAAACATAACCGGTACACCTCC
ATGCTTTTGAGGAAGCAGTAGTCCATGAGCGCACATCCACTACTGCTGAA
GGTACTAGACTAGAGAATTCATTCACGTCATTCGTGCCGCCGACCATCAC
GAACAACCATCGACATCATTGTTACTCCGGAGTACAGCAGTACTACTTTC
TCGCACCCACACTTCAACTGAAGATCTGAGATATTTCCGTGCTGCGCTTT
CAGGAGTTGCTTGGATCGTACCCCCTTCTTTCAAGTGTTTCACCCTTCGA
CGGACTTCGGACGTATTGCAGCAGTATGTGATGTGAAGGATGTGTCATAT
CGTACAGCAGTAGCAGTACACGTGCTGCTGGGCGTGGCCTGGTGTGTGTG
TGTGCGTGTGTCGCCATCCCATCTATGCTGGACCCCAGTCTAAACCTTTT
GTCTTTTACGTGGGTCTGATATGATGTGTAGGCGCATCCGCCAGGGAGGG
GTCACACCTGTGGGTCGCCCATACACAGCAGGCGAAAAGAACGCATCATG
ATAAACATAATAACCCTCTTGTGCATACCCAGGTACAGTATCATTCGTCG
AAGTCATTTTTGAGTTTTTTTTTTTCCGTTGGCCACCTTCCTTCCTTCCC
TCCTTTCTTCCTTCTGCGCTATCATTTTGTAGTTTTTTTTTTTTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTGCGGTGCTTGCCGCAAGTT
TCGTCGCGATGGTCGAAGAGTATGGGCCGACGCCGACCCTTCAGGAGGAC
TGTTCGGAGAGTACCGCAATGTACTTTGATGTTTGTATGATTAAACCTGG
TACACAATGCGGAAGAAAAGTTATTTGTTCGAGGAGGGTGTGCCACAAAT
CCCACGGCAGGAAGAAATCCAGCCAGCTGCCACATACATAGCACAGCCAG
CTTGTCTCGGTTTCCGGTGAGTGTCCGAACGGGCTGGTACCCCTCGTGAT
TTGTCTGAGAGAGCGCACCCGGGGTCCAAACTAATCTCCATTTTCACGCC
CGATACATCGACGCACGGGTAGGGTGCAAGGTGCCTAATGTGCACGTCTG
TCGAAGCGGGTGTCATCGGCAAGACTACCCGCAGAGAGAAACATCTCACG
GAGATATCTCTTTTCATAAAGCACACCCGCAGTCGTTCAACTTCGGCACG
TACGTCATACTTGTGCAGTGCTCCCCGCTCGTCGAGACCAGGCAGGGTCG
GCCGTGGAGCCGTGGACATGAATCCTTCAAAGAAAAAAGACAAATACTGT
ACTGCTGTGTTGACAAAAGTCAGCACAAACAACCGCAGATGGATGGAAGG
CGGAGAAAAAACGAATCAAAGCAGCAGTAGAGTTCAAAACCTTTTGGTTT
GACATTTTTTTCTCGTGTGGTGACTTGAACCAAGCCCGGCTGATGCGTCC
GACTCGTGCGTTTTGATACACCGGAAGGTGTAGACTGGCGTTCATATTTA
ATGGGATGACAATACCGTAATGTTGGGAGTAAACGCCCCGGGGGGCGTTA
TCCCTTCCCGAGGGAAAAAAGGCGCCCCGGGGGCGTTGACAGCAGTGATA
CAGGGCGTTTTCTGGGAAGCGTTTTCGAGTACCGGCGCCCCCCGGGGCGA
TACGAAAAAAAAAATTCTCCCTCCCCACACACGAAACACACACAGCAACG
AAAATAGCACATCCGCAGGTACCGGTTGCTGAACACATACGATACTACGA
TGATACCACCTGTACCGGAACGCACCGTACACTAATATTATATCCGTTGC
CTGCTTTGAAATGCTTCGGAAATAGCTCGATTCATCTCTCTCCCCATCAC
ATGCCGGCACCGCCCCCCCCGGGGCTTTGACCCCAAATATGCGGAAGGGG
GGGGCGTTTACAGTGATACGGGGCGTTTTTTTTAGAGCGTGGCGTTCACA
CCGTGAACAGCCTATTTTCGCCCGAAAAAGGCGCCCCGGGGCGTCTACAC
ACACACCGGCGTGGTAAGAAAGTTTTCGCCGGCGTCCCCCTTTTCTATGT
ACGCCTGTTGCGTTGGGATGTTCGTTCGTGTATTCTCTGCTGCCGCGTGT
TACGCTACTACGATTTGCTTCTGCTGTACGTGGCCCATCTTTGATCTACC
TGCTGTCTTCTATTGCTGTTGCCAAGTCTCCATTCTCGTATTGTATCACA
CCGTCAAATGTGCTGCTGCTGTGTACACCACGACGATGTGTATGCCATGC
TTGTATGTACTGAATGCGTTGTGAAGAATACTTATGATGCAGGGACGTAT
ATCTGTGTTGGTCCTTGTTGTGTGTTAATTGTTGTTGCGACGTGAAAAGC
CTGAGGTGCTGGTGTGCTTCATCCCCATCGAGTAAACCGGGCTCGCATAG
AAAAAATATCAGATCCTCAATTTTTTTGTATGGTCAACCCCACCCGGGTC
AAGGCTTAGAATGGTTTACGTGATGTGGTGTTTTTGGTTGGTACAGGCAA
AACGAATGGGATGCTCCACGGCTCCTTCCCGTCCATAGATAGCGGTAGCC
GGGACGAAGTATATTCCACTGCGCCTACAAGTATTTTGAGCCCCCCCCCC
TCCCATCCCTCTTTCTTGACGCATTTCTTTTATCATATCATAGGCGAAGA
CCGCAGTCACTGTCGATGACGGTAACCGGCAAGGCACCAGAAGACACGAC
CGTAGTGGTGGCCGGTTCGACGGGGTACATCGGCAAGTTTGTAGCCATGG
AGTGCGTCAAGCGCGGGTACAAGACCATCGCGCTCACTCGCAACCCTGAT
GCCGTGGTGGAGGGAGCGGAGATGGTCGTGGCGGATGTGACAGACCAGGC
TAGCGTTGATGCGGCCCTAGCCGGACGAAAGGTGGGATGACGGCGATCGA
ACGTTTTTGGTTAGCGGTAGTGGCGGTGTTGTTGTTGGTGGTGGTGGTGG
TGTTGGTGGTGGTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTG
TTGCTGTTGCTGTTGTTGCTGTTGTTGTTATTATTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGTTGC
TGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTTTTGTGGTCG
TTGTTGCAGAAGTTGTTACAGCAATATTGTTGCGGTAGTTAAAAAGGCAT
ATAAAAGCATGCTGAATGCTGAACCCTCTCTTGAAAATACCTTCCTGGCA
CCTGTTTCAAGTCCAGCTGCGCATGCTCGAGCCAAACGGCCGTAAACACT
TCCGCGATGTTCGTGCCGATAATTTCACGAGTTTTTACTTTCTCTCCAAA
AATTTTGTGGTGGCAAGATTCAGCCGCCAACTTTCCCTTCCGCTGTTGTG
CGGGCCGGTCAAACTGTTTTGTCTCCTTGGCTGCAATGATAGCTAGTCCC
AAAGCAGATAAAAGCAGTATTACTTCCTGTGCCGGTAGGTATTAACCTAT
TTAACCCTCCGACATCCGCCATCTCTTGTGACTCCCGATTGATTGATCAT
TCTGTTGGGAAAATTCGTATTAATAGATACAAAACACAGCAGCAAGTAAT
ATCTTCCGATGTTGTGCCGAATGACATCATTCCATCTCTCGAGAGACTGG
CTGGTTTTCTTTTGGAGAACGTTCCGTGTTTTAGAACGTTCCATGGGTGT
TCGCGGTCGAGCAAGGACGGATGCAACATGAAACTATGGAAGCAAAGTGG
TTGACATTTTCTTGGGCTTTCAGAATATGAGGTCATTGTGGCCAGAGACC
CCCAAGACTCCAATCAAGACATGGCGGCCTGGGTTGGCCGACAGTAGGTT
GGTTTCGAAAGCAGCGATTAAAGCTGAAAAGAGGGTCTGGGGGCCTACCT
CCGGTGAACGACTCGGCCTCAACCCAGTTGGTGAAAAAATATACTTCGTA
CGTAAATAAAAAGTTTGTGTGTGTTTTGGTGTCGTGCCTGGCCAGCCGAA
GCCGTACCAAGTCGGACGGCCAGCTTCGCGGTTGTTGGATTTTTGGAGGT
AGCCCCGAAGCTAGGACATGGCAGTTTAGGATCACACACAACGACGACAC
GACAACCCATCTGCTACCCGCTACCTACTCTGTACCGGATGTGTACCATG
GTTCTAACTCGCCCGAGAAAAATTGTGTCTCGAAAAAAAAAAAAACGTTG
TGAAGGTTGATGGCATGGTGTCGTGCCTGGCCAGCCGAAGCGGCACCAAG
TCGGACAGCTTCGCGATAGACTACCAGGCGACGCTGAACTGCCTCGAGGG
AGCGAAGAAGGAAGGGGTGGCGCACTTCGTCATGCTGTCGGCGTTCTGCG
TCAAGAAACCTACGCTTCAGGTAATTCGTGCGTATGATATGTATGATGTG
TGTGTGTGCGTTGAAGGTGTGACCTGAGCTGTAACCTGACCAGCCCTCAC
GCTGCCCATCGAATCGAACAAAATTCAACTGCATCCTACACTGCTGTCTC
CTGTCTGTGCACGGACATGTATGTAGCGGTGGGCCTTGATTAATTGGGTG
GCGCCCTGAGACCACTTCTGCCGCCGGAAAAAAAAAAGCATTTTGAGGTG
AAAGGCCGATGAATGTCCCTCGGTATACTGTACCCGATTTTGGCCATCGC
TCCTTTATGCGTACTCGTATACATTAGTATAGGTACATGTATATAGTGTA
TATGTATGTTGCACATGTGACCGGTATGCAAAAGGGTACCCTTAAAAAGA
CCTAAATGTTGCCAGGTGTAATCGGTGTGGGCAACTGCTTACATATACGT
GTGTGGTATTCATATACGCATGGATATTCCTAGTGTGCTCTTACAGTACA
TAGGCAAGTACTCCGTGAGTACAACACCTGGTGTGTTGAAGGTATGCTTT
GATGTGTACGTGCTCAACGCAACATCGAATATCACGTACGGCCCGTGCAA
ATATAACCGCCAATCGGAGCCTGTCTTGCACCAGGAGACATGTTTCCTGC
CATATCATGTGATAAAAAATTGCTTTTATACGGTGGAGTCACTACTGCGG
CATGTAGCCGCTCGAAGCAACAAAAAGGGAGAGCGAAACCCGCCTACTAC
CAGGGTGCGCTTGAAGCAAAACACGACCATCCGTCGGAAAACTGCTGTCT
TGCACAAGCATGAGGTAGATAACTGCTGCTACTGTTGTCTGTGTATCATC
CGTATGTAGCTGCTGAGAGCAAAAAGAAGGCCAAGGTCTCCTTGGGGATT
GTGTGCTGACTGCAGCAGCGGCACGAGTACCTACCCGCTTCGGTGGGCAA
TTGAACGTCACCTTGCGGGAGGATGCTACTTGTTTGGGCAATTTTGCCGT
GGATTTGGTTTGGGTTTGATTGTTGAGCGCTCTTCCTTCCGGCAATGTTC
TCCACTCCCGCCCCCCCCCCCTCCCTCCCTTCCTTCCTCCCAGAGGCTCT
CGTGTTTTCTCATTCGTGAACAGGATAATACAATACCGTAGGCTGGTGGG
GAACGGAGGCTTACCGCAACGCCGTTTGTCAATTTTTTTGATCTTTGTGT
CTGTTCTATTACGTATCATAATACCTGGAATCGTTTTATCGCTGTGCCGC
ATCTTTGTGTGTTCTGTTACGTGCTTCGAGTATCATATTACCTGGAATCC
TTCTGTCGCTGTGCCGCATCTCGGTCTCTTAGTTTCGCCTTTTTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCGCCTTTTTT
ACAAAATACGGGCCCAAAAAGAAGAAATTGTGTACGTCGAAGTACTGAAA
GTAGTGTGGCGTAGGTTTCGTAACGAAAACGGTGTTTCCCACATTTTGGT
AATGGTGTTCATTCATTTCTCATTTTTCGTTGTCTCGGCCCATTCTGTGT
TTTGTGTTGTTTTGTTTCGATTCTACTGCTGCTGCTTCTGCTGCTGCTCA
TGCCGCTTCTGCGACAAAACACAACACACAACAGTTCCAAAAAGCAAAGC
TGAAGTTCGAGAACGAGCTGGTTGCTGCGGGGGAAGCGGGCGAGATCGGG
TACAGCATCGTCAGACCGACGGCCTTCTTCAAGAGCGTCTCCGGGCAGCT
GGAGGTGCGTACTGCTGTACCGGTATGCTCGGCCTCGTGCGTTCGTGCAA
GCGTGCGTGTATGTGCGTGCTTTGGCGCCTTTCCGTACGCCGTATGGTAT
GAATAAAGTACTCCGGAGCGCAAGGTACCGCCATCACAAGGGACCAGAAC
CCTCGACCGGTTAGAAACCTCGGTTATGGTACAGCAGTGTACACCTGCAA
CAGTAGTGCAGCAGCACTCCATCCCTTCTGCGAAAAAAAACGAGTTGGGG
TCGGTGGTGTTTCGAAGTCATGGAACCACCGTTTTTTCTGTTTGTCTGGT
TGAAGCGAGAAAAGAGAGAGCTTGCCGAAAGCGTGTGTAAAGCATTATCT
GATGTTGGTACCGCACTCTCCCCATGGCGAAGCACTTTTATAGTTGACGT
TAGATAACACACCCGCTGGACTGATCTTGAGAGCATGATTGCTCTTTGGC
AAGAACAGGCAGTGCAGGCCAGTGTCGATGATGGTAGCGTTAGATAGATC
TCGTCGAAAAGCTTTTCGATGATATATCGAGTTTGGTACCTTGGCACCTC
TTTGTTTCGGAGTGATCGACCTGTAAGAATCAGTCTAGGGGAATCCAGTG
TGGTATTTTACGCCACGTAGCACAGAAGTGCGACGGAAATTGTATTGAAG
CTTTGAAAGTCGGTCCAGGGGTTGGGGGTCCCGTGTGGCGTCATATGGGG
GTCCCGTGTGGCGTCATATGGGGGTCCCGCGTGACGTTATATCCGACCTG
CGGTGGGTCTGTTGGTTGTTCAATTGGTTTGTCGACAGCCTTGGTTTATT
CGTGAAGAGCAGAGGCCGGAAGGTTGTGGACTTCGGTGTTGAATCTGGAC
AGCTGGAGGTACCCACCCACCTCCCTCAACAGCACTCAAATATACATCCC
GTGAACCCCGCCCTCTTGGATTGATGGACAAGTTGGATGCCGGTTTTGAT
TCTCCTGCTGTCGCGCGTGTCGCAGGTTGTCCAAAGTGAAAATTCACCCG
CTCCAAAGCTCACGTACGTTCAGCAAACCCCACCGCCCCTCCCTCCCTCC
CTCATCCACGATGAACGACCTCTCTCACTGCTGGAACTAACCTTTACCCC
TTTTTTTTCGGTTTCTTTTCAAGGTGGTGCAAAGCGGTGCACCATTCGTC
GTGTTCGGCGACGGCACCATGTGCAAGTGCAACCCCATCGCCGAGGCAGA
TTTGGTAAGTGTCAAGGTCAACCGACCTGCGCACTTGGGAAACCGGTGTA
ATACCACGCGCCCACGCCAATGCTGTTACATCACACCTGGTGAAGCGGGA
CCACGTGCCGCATGATGCAAACACAGAGAGAGGACCTGGTAAACAGCACT
TTATTTTATTTATTTTCCGTCTTTGCACAAATACTTCGTACTTCGAAGTA
TTAAACATCACATTCTCTGGATTATTCTCTCTTGTGACCACAGGATCTGC
CTGCACTGCACTGCACGAGAACAATGTTTTCAAGTTTTTTTTTTTGCACT
TCCGTGTTGCAGGCGACGTACTTGGTGGACTGCATCACGGACGAGACAAA
GGGAAACAAGATCCTCAACGTCGGGGGCCCGGACGATGGTCTCACCATGA
CAGCTCAGGGCAAACTTGTGAGACGTCACCCCTCCGAACCGCCTGTCTTA
AGTGCCGGTGATACGTGCTGATATGGGCAAATGCGACGGTGTGCAGTGCC
GCGGAGCTCCTGGTAGACCTATCTACTGTTGCTTCTTTTGTCCGAAGCTG
TTTGCGAATTCGTTGGATGGGTGCTGCCCCAAACCTACATATTCCGTTTG
TGATTTATATCCGCCTCCCCCCCTTCTCCACGTACACACAAGCAAGTACC
TGCACATGCAGAGCAGTTCAGCCTCTTGAGGTGCCGAGGTTTCCGAGGCC
CCGAGCAAGGCATTCGTTTTGCGGCTGCGGCTGCGGCTGCGGCGACGGCG
AAGGCGAGGGGGAACACGATTTTCCGATGAGACACACCTGCCCTGCCGGG
CGAGACCTTTACTCCTTCTTTTTTTTTTTTTTTTCGGAACATGGCGTCGC
CCCCCCCCCCCTGTTCCCTCTCTTGATGAAAGCCGCGGACGCACGGCGTC
TCGAACACGCGTTGTGTTTGTGTGTGTTAGTGTTTGTGTTTACACGCATT
GTGTTTGTGTTTTGTGTTTGTGTTTGTGTTTGTTGTTGTGCGTGCATGTG
TGTTGTCTCCTATCTGTTCTAGTCGCCGGGCTACACCCTAAGGTGTGTGC
GGGCGTACGAGCAGAGGTCGGTCACCGCAGAAGGACGTTCAACATAGGAA
AGGTCTCCTTTGAGCTTAATTTCCATCCTTTGTTACAGGCTTTGGCGCGG
AGCGGTACGGTAACGTTTAGCCCGCCGCAGGCGGAACCTTTTTTTGGGTG
TTCCCGAGCAACGGTGCGGTACAAGAAACTGGTTTTCTCCTTTTCCTTCG
GCGGAACGGCACACACATCAGCTCACGTCGCGCACTCTCGTATCTTGTTT
TGTTAATCCGACGCCGCTATTGCCGGTTCTGGTATTTTGCTTGGCGTTGC
CACGACAGCGCACCGGCGCTTGTGGCTAACCGAGACGAGCATGGGAGAGT
ACATGCCCCAACCGCTTCAGCGCGATGCTCACTCTCCAGGTTACCTTGTT
CTATACTCCGTATATCGCAATAATTCAGCTTTTTAGCACAAATGCATAAG
CTCAACGAGTTTCCCGCGCCGTCTTGATCGCCGTGTTTTATAGAATAAAA
TCAACCCAGCTTTTTGCTAAGGCCTTCTCGCTTCACACCTAACAGCACAG
CACAGCAAACACACGTCGCGCTCCCTCTTCGTCATCTGGTTATTTCGTCA
AGATTTATTTTGCTCTCCTGGAACAGCGCATCAGTACGCATCGCACACAA
TCCGCTCACCTTTCTTTTTGTTACCCCCCCCCCCACGCATTTGTTGCTTT
TTTCGCCAGCTCTTCGAGGCCGTCGGCAAGCCGCCCAAGATCGTCAACGC
GCCCGTCCTTCTGTTCGACCTCATCATCGGCGGTTTGGATTTCATGGCCA
AGATTCTGCCGGGGCAGTTCGAGGACCCCGCCGAATTGGCCAAGATCGGC
AAGTACTACGCCGTCGAGGACATGCTCACCACAGACCCCTCAGAGAAGGT
GAAAATGCAACTGCATTAATTAGCGGAGTGCTTGCCATTCTTGGCCTCTA
TGATTCTCCTAAAAATAACCAGTTTTCCCCCTGTTGGACCCTTGAAGAGT
GTGGGTAGTTTCTGTAAGACGTGCTGTGCTGTAAACCGACTCGACCCACC
CACCCACCCACCCACCCCCAAGAAAAATCACGGGCCCCCCTTGATGGAGA
CCCTTTGTAAGACATGCTCACCACAGACCCCTCAGAGAAGGTAAAATGCA
ACTGCATTAATTAGCGGAGTGCTTGCCATTCTTGGCCTCTGTGATTCTCC
TAAAAATAACCAGTCTTCCCCCTGTTGGACCCCTGAAGAGTGTGCGTAGT
TTTCTGTAAGACGTGCTGTGCTGTAAACCGACTCGACCCACCCACCCACC
CACCCCCAAGAAAAATCACACACCCCCCCTTGATGGAGACCGCTTGTAAA
TGGTAAGTAATAATTTCTGCAACGTCAGACTGGCCGGGTGGGAGATGAAT
CCTGCTGCTCCCTCCCTCCCGCACAGCAGCGGTTTGTAGGGTTTCCAGCG
CGTGAATGCTATGCGTTTACCGCGATGTAGAACTGGCACGTTGTGTTGAA
AACGAAAACAATACTTGCATTATCCTGATTTTGTTCTTTCTCTCTCGCTC
CTCTCTCTCTCGCTCTCTTTCAAAGAGGGCGTCTCTTTTTCTCTCCGTGT
TTCGCATTGCGCACTCTCCTGCAACTATCACATCATGCACAGCAGTACGC
ATGAGTTGTGCTTTTCTCCTCTGATTTGCCACATGCAGATTGTACCGGGT
GGGTGGCGAGGGACGACCATCTCATTTCTGTGCCTCAGTTATTTTCTGCG
CGCACGCACGCAGGCACGCAGGCACGCCTCGCGGGAGTCTCTGCCTCTCC
TCTACCCCCATGTGCATGATTATTCAGAGCTGCGCCTTTTTCATTTGACG
TTACTCTGGCGGGCTGGGTCGCCCCCAACCACGTCGATGTTTGTTTTCGG
CCTCGATGCATCATTTCTATTTCTGTCTTGTTGTACCTCGTGCTTGATAC
ATACTCAAAATAACGCACTTTTCAATATTTTCGATTTCGATTTTGTCCGG
CCGCCCCCACCTTTTGTTGATCCCTCCCTTTTTTGTTTTGGTCTCACGGG
ATGGATGACACAGTTCGGGACGGTTACGCTCGGAGAGCACTACAAACGGA
TCGCAGTGGAGGGCAACGATTACGACCCGTACACCACCCTGTTCGCCTCG
AAGAAGATGCCCTCCGCGATGATCGGCAACATGCTGGGGAGCGCCCAGGA
AGTTGAAGAGGAGGAGAAGGCTACCGTTGCCAAGTAGCGCTCGCGAGTAC
TGTGAAGGACATGTTCCATAGGGCGCGCGACGTCAATTTTGAGAGAACTT
TCTCCGTGAGACTTTTCGGCCGCAAACGAACGAAAGAAACCTGCACACCA
TCATCCCGTTCGTTGGTGGGTGTGTAGGCTTTTTTGTGCACCTGTTAAAT
GATGGCTGCTGATCACACCCCCCATCCCCCTCCCCCCCCTTTACCCCACG
GTGGAAGTTCCGTCTGTCTGGCCCCTCGACGGGATCATTTACCGGTCCGT
ACGGTGGCCGGGAACTCTTTGCTTGCTGATTAAACAAATGTTATGAAAAA
AATAAAAAGTAAAGTTTGGCTTTTACAGTAGCGTTTTGGAAACAAAAGTG
TTTCGAGGAAAATGAAAATAAATATGAAAATGGACCGGAACCACTGTTTA
CCTTTTAATAGCTACCTGTATTGCAGGCTTGCATAGGTAAAACTAAAAAA
GTTGGTGTCATAGATGGTCGCTGCTGCTGCTGCTGCCGTCAAGCGCCGGC
GGTCTCATCAAATAACCGAATAGTATGGTGTGGTAATGGCCGAAATACGG
GCTGTCAGTGTGCTCTTTTCTTTGTTTCGTTGTTTTGTGCCGGTTCATTC
AGCCAGTCAGCGTTGTTGGAGGTGTATCCTAGTCTTGTTTTGAGTGAAAA
TTCTGTTGAGGAGTTGGGTGTTTTTAGAGGGTGGGTCGGTTTGGTTTACA
TCCGTGTGGCGCCCGAGGCCCGCCGGTGCACAACTTTTGCTGAGCCGAGG
TTAACCTTCTTTTCAGCGGAAAATTTCCCACGGGGCCCCTGTGGACTGAT
GTTCTTTGGAAGGCTACACAGTTCGATTGCTCTGCTGTACATGAATACAC
AGTTCGATTGCTCTGCTGTACATGAATGTGTGCAATGAAGGACAGCTTGG
AGAACCCCTCGCCAAGAAAATATGTAACGCCAAACTTGCTGTTCTCAAGT
GCGATGATATTGTTTTTCGCCTCCTGTGCGGTGCGTGCCTCGCTAGAAGT
GTACCTGGTAGCGCAAACGACTCATCACGCAGCCGCAGCGCTTTTTGAAG
CCAAACAATACAGTAGGAATCCTTCGTCGTGGTGTGGTGTCGCTCTTCGC
TGCCCGTCCGTGTCCTCGGGCGGGGTACGCTGACGTGGGAAGTATGATAC
GAAGTAAAGAAGGTGGGGTGTTGATTCATATTTCCTCGTTTTTAGAAGCA
AAGTATCACAGGCGAAATCTGCACTTGAGTGCTACCGCTGCGCATCGTAT
TTGTCATTAACCCTTGACGTTCATCGAGTAAGCGTTGAGCGCTTTTCATC
GAGCAAGCGTTTTCGCTGGTCATTGTTGGCCAACCTTGGTGGTGGTTGTT
CGGAGTTCATTAGAGGCATCGTGGCTGGCATGAAGTAGAGACCAAAAACC
GGTGCGTGTAAGGAACGATGACGTACGGGGCTCTTCGTGGACCCTTGGCG
GCCCACTTGCGCTTGGGGTCTCGAAAGTGTTGGATCGGGAACATGTATTA
TCGAAGTAGCAAAAAATAAAGATAGCTCAGCCTGCGCACACAGCGGTCGG
ACTGTGGATAGTATCATGGCACAGGCGTCCACACGGCAGGACGTTTTGCT
TGGCAACGGAATAAGGACGCGAACCACCGTCCACCCGGGTGTCTTTTTCG
TGCTTGTTAGGGGTGTTAGAATCAGAGCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig642:66109..79238+

>mRNA_P-littoralis_Contig642.22.1 ID=mRNA_P-littoralis_Contig642.22.1|Name=mRNA_P-littoralis_Contig642.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1167bp|location=Sequence derived from alignment at P-littoralis_Contig642:66109..79238+ (Pylaiella littoralis U1_48)
ATGAAGTTGCGAGCCCTGTCTGCCTGCGCCCTGGCGCTCCCATCAGCATG
TGTGGCCTTTCTGTCTTCTGCGCCTAGTTCGCCTCACATGATCAGGCGAA
GACCGCAGTCACTGTCGATGACGGTAACCGGCAAGGCACCAGAAGACACG
ACCGTAGTGGTGGCCGGTTCGACGGGGTACATCGGCAAGTTTGTAGCCAT
GGAGTGCGTCAAGCGCGGGTACAAGACCATCGCGCTCACTCGCAACCCTG
ATGCCGTGGTGGAGGGAGCGGAGATGGTCGTGGCGGATGTGACAGACCAG
GCTAGCGTTGATGCGGCCCTAGCCGGACGAAAGGTTGATGGCATGGTGTC
GTGCCTGGCCAGCCGAAGCGGCACCAAGTCGGACAGCTTCGCGATAGACT
ACCAGGCGACGCTGAACTGCCTCGAGGGAGCGAAGAAGGAAGGGGTGGCG
CACTTCGTCATGCTGTCGGCGTTCTGCGTCAAGAAACCTACGCTTCAGTT
CCAAAAAGCAAAGCTGAAGTTCGAGAACGAGCTGGTTGCTGCGGGGGAAG
CGGGCGAGATCGGGTACAGCATCGTCAGACCGACGGCCTTCTTCAAGAGC
GTCTCCGGGCAGCTGGAGGTGGTGCAAAGCGGTGCACCATTCGTCGTGTT
CGGCGACGGCACCATGTGCAAGTGCAACCCCATCGCCGAGGCAGATTTGG
CGACGTACTTGGTGGACTGCATCACGGACGAGACAAAGGGAAACAAGATC
CTCAACGTCGGGGGCCCGGACGATGGTCTCACCATGACAGCTCAGGGCAA
ACTTCTCTTCGAGGCCGTCGGCAAGCCGCCCAAGATCGTCAACGCGCCCG
TCCTTCTGTTCGACCTCATCATCGGCGGTTTGGATTTCATGGCCAAGATT
CTGCCGGGGCAGTTCGAGGACCCCGCCGAATTGGCCAAGATCGGCAAGTA
CTACGCCGTCGAGGACATGCTCACCACAGACCCCTCAGAGAAGTTCGGGA
CGGTTACGCTCGGAGAGCACTACAAACGGATCGCAGTGGAGGGCAACGAT
TACGACCCGTACACCACCCTGTTCGCCTCGAAGAAGATGCCCTCCGCGAT
GATCGGCAACATGCTGGGGAGCGCCCAGGAAGTTGAAGAGGAGGAGAAGG
CTACCGTTGCCAAGTAG
back to top