mRNA_P-littoralis_Contig642.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig642.16.1
Unique NamemRNA_P-littoralis_Contig642.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: A0A6H5K6H3_9PHAE (FAA_hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H3_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 5.170e-113
Identity = 175/221 (79.19%), Postives = 185/221 (83.71%), Query Frame = 2 
Query:  353 EHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVGPPLSPT 1015
            EHALEMGGNPDK+PPFFFTKPPDAAVDVSA GAVV YPPET DLQHEVEMVVAIG+GGR I PRDAL HVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGP+GALT    A  G V A             DEG R+IWLEV G RRQDS+LGEMVWSVPEMIARLSELF LEAGD+LFTGTP  VAPLA+G++V+AGVEGLEPCRF VGP L PT
Sbjct:   72 EHALEMGGNPDKEPPFFFTKPPDAAVDVSAAGAVVHYPPETEDLQHEVEMVVAIGKGGRCIPPRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPIGALTTTPPAKGGGVGAAA-------GLVGDEGGRRIWLEVGGGRRQDSVLGEMVWSVPEMIARLSELFTLEAGDVLFTGTPKGVAPLAVGDDVEAGVEGLEPCRFRVGPVLPPT 285
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BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: A0A2U8GRV2_9RHOO (5-carboxymethyl-2-hydroxymuconate isomerase n=4 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2U8GRV2_9RHOO)

HSP 1 Score: 258 bits (660), Expect = 1.430e-78
Identity = 126/242 (52.07%), Postives = 166/242 (68.60%), Query Frame = 2 
Query:  272 AVPTLTVVGSHKRFPVRRVYCVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVG 997
            AVP++ V GS KRFPVRRVYCVG NY +HA EMG +PD++PPFFFTK PD+ +   A G+V PYP E+ D+ HE+E+VVAIGRGGR+I+  DAL HVF YGVG+D+TRRD+Q AAKKAGRPW+  K FD++ P   + P + +G  A                   A +IWL+V+G RRQ   L   +WSVPE+IA LS  FALEAGD+++TGTP+ V P+ +G+ ++ G+ G+      VG
Sbjct:   14 AVPSVAVSGSAKRFPVRRVYCVGRNYADHAREMGHDPDREPPFFFTKHPDSLI---ASGSVFPYPSESNDVHHEIELVVAIGRGGRNIAAEDALEHVFGYGVGLDMTRRDLQGAAKKAGRPWEIGKAFDAAAPCSEIVPASGSGHPA-------------------AGEIWLDVNGERRQQGDLSSQIWSVPEVIAHLSRYFALEAGDLIYTGTPAGVGPVKVGDRLEGGIAGVGSIAVTVG 233
[Close]
BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: B6IQ60_RHOCS (Fumarylacetoacetate (FAA) hydrolase, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6IQ60_RHOCS)

HSP 1 Score: 255 bits (652), Expect = 2.260e-77
Identity = 135/244 (55.33%), Postives = 164/244 (67.21%), Query Frame = 2 
Query:  278 PTLTVVGSHKRFPVRRVYCVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVGPPLS 1009
            PTL +VG  +RFPVRR+YCVG NY  HA EMGG+PD++PPFFF KP DA V   ADGA VPYPP T DLQHEVE+VVA+GRGGR+I   +A   VFA  VG+DLTRRD+Q AA+KAG+PWD +K FD S PVG L PV  AG                     G  +IWL V+G RRQ + L +M WSV E+IA LS LF L  GD++FTGTPS V  L  G+ + AG++GLEP    + PP++
Sbjct:   16 PTLAIVGRPERFPVRRIYCVGRNYAAHAREMGGDPDREPPFFFQKPADAVV---ADGADVPYPPRTDDLQHEVELVVALGRGGRNIPVAEAGALVFAQAVGIDLTRRDLQAAARKAGKPWDTAKAFDHSAPVGILHPVGPAG-----------------PLTRG--RIWLAVNGDRRQQADLADMTWSVAEVIAELSTLFDLAPGDLIFTGTPSGVGSLLPGDRIDAGIDGLEPLVTRIVPPVA 237
[Close]
BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: D7FPA3_ECTSI (Fumarylacetoacetate (FAA) hydrolase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPA3_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 4.140e-75
Identity = 124/165 (75.15%), Postives = 133/165 (80.61%), Query Frame = 2 
Query:  521 GGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVGPPLSPT 1015
            GGR I  RDAL HVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGP+GALTP   A  G V A           + DEG R+IWLEV G RRQDS+LGEMVWSVPEMIARLSELF LEAGD+LFTGTPS VAPLA+G++V+A VEGLEPCRF VGP L PT
Sbjct:   10 GGRGIPTRDALQHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPIGALTPTLPAKDGGVGAAA-------GLAGDEGGRRIWLEVGGGRRQDSVLGEMVWSVPEMIARLSELFTLEAGDVLFTGTPSGVAPLAVGDDVEARVEGLEPCRFRVGPLLPPT 167
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BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: A0A4R6EUZ1_9BURK (Fumarylpyruvate hydrolase n=1 Tax=Paraburkholderia sp. BL10I2N1 TaxID=1938796 RepID=A0A4R6EUZ1_9BURK)

HSP 1 Score: 249 bits (636), Expect = 4.570e-75
Identity = 129/249 (51.81%), Postives = 164/249 (65.86%), Query Frame = 2 
Query:  251 SYAVPKAAVPTLTVVGSHKRFPVRRVYCVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVG 997
            +Y VP+   P++ V GS  RFPVRRV+CVG NY +HA EMG +PD++PPFFFTKP DA V   A   VVPYPP T DL HE+E+VVAIG+GG+SISP  AL +V+ YGVGVDLTRRD+Q  AKK  RPWD +KGFD+SGPV  L PV + G                     G  +IWL V+G  RQ   L EM+W V ++I+ +S+  AL+ GD++FTGTP+ V  L  G++V  GV+G+    F VG
Sbjct:    3 TYVVPQPEQPSVEVAGSSSRFPVRRVFCVGRNYADHAREMGADPDREPPFFFTKPADAVV---AARGVVPYPPLTSDLHHEIELVVAIGKGGQSISPDKALDYVWGYGVGVDLTRRDLQAVAKKQSRPWDWAKGFDASGPVTPLLPVEKTG-------------------HPGTGRIWLSVNGEVRQQGDLTEMIWPVADVISYVSQSVALKPGDLIFTGTPAGVGALHPGDKVTGGVDGVTELAFEVG 229
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BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: UPI001CD85D11 (fumarylacetoacetate hydrolase family protein n=2 Tax=Massilia TaxID=149698 RepID=UPI001CD85D11)

HSP 1 Score: 247 bits (631), Expect = 2.260e-74
Identity = 125/248 (50.40%), Postives = 163/248 (65.73%), Query Frame = 2 
Query:  254 YAVPKAAVPTLTVVGSHKRFPVRRVYCVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVG 997
            + +P  A+P+L V GS  RFP+RRV+CVG NY  HA EMG +P ++PPFFFTKP DA V  S     +PYPP TR+L HEVE++VA+G GG  I+P++A+  V+ YGVG+DLTRRD+Q  AK AGRPWD +KGFD+S P   L P  +AG                 + D    +IWLEV+G  RQ+  L EM+W+VPE++A LS L AL  GD++FTGTP+ VA L  G+ V+ GVEGL      +G
Sbjct:    4 FVIPVPALPSLAVAGSADRFPLRRVFCVGRNYGAHAREMGSDPAREPPFFFTKPADAVVPASGR---LPYPPATRELHHEVELIVALGAGGADIAPQEAVALVWGYGVGLDLTRRDLQAIAKDAGRPWDMAKGFDASAPCSPLVPAAQAG----------------HARDA---RIWLEVNGTLRQEGRLDEMIWTVPEIVAHLSRLVALAPGDLIFTGTPAGVAALVPGDRVRGGVEGLAQFALEIG 229
[Close]
BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: A0A105VHP6_9BURK (Ureidoglycolate lyase n=72 Tax=Burkholderia TaxID=32008 RepID=A0A105VHP6_9BURK)

HSP 1 Score: 247 bits (631), Expect = 2.420e-74
Identity = 131/248 (52.82%), Postives = 161/248 (64.92%), Query Frame = 2 
Query:  254 YAVPKAAVPTLTVVGSHKRFPVRRVYCVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVG 997
            Y +     P++ V  S  RFPVRRV+CVG NY EHA EMG +P ++PPFFFTKP DA V   A GAV PYPP T DL HE+E+VVAIGRGGR+I+P DAL HV+ YGVGVDLTRRD+Q  AKK  RPWD +KGFD+SGPV AL P    G  A                   A +IWL V+G  RQ   L +M+W VP++IA +S    L+AGD++FTGTP+ V  L  G+ V  GV+G+    F+VG
Sbjct:    4 YVIDAPERPSVAVDQSSARFPVRRVFCVGRNYAEHAREMGADPTREPPFFFTKPADAIV--PAAGAV-PYPPLTNDLHHEIELVVAIGRGGRAIAPADALSHVWGYGVGVDLTRRDLQAEAKKLSRPWDWAKGFDASGPVTALRPAAATGHPA-------------------AGRIWLAVNGETRQQGDLADMIWPVPDIIAAVSRSVELKAGDLIFTGTPAGVGALQPGDRVTGGVDGVAQFEFVVG 229
[Close]
BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: UPI0005D454CE (fumarylacetoacetate hydrolase family protein n=1 Tax=Rouxiella chamberiensis TaxID=1513468 RepID=UPI0005D454CE)

HSP 1 Score: 244 bits (624), Expect = 2.600e-73
Identity = 125/248 (50.40%), Postives = 160/248 (64.52%), Query Frame = 2 
Query:  254 YAVPKAAVPTLTVVGSHKRFPVRRVYCVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVG 997
            + +P  AVP+L + G   RFP+RRVYCVG NY EHA EMG +PD++PPFFF KP DA V    +   +PYP  T DL HEVE+VVAIG+GG++I+P  AL HV+ YGVGVDLTRRD+Q +AKK GRPWD +KGFD S P  AL PV++ G    S                   KIWL V+G  RQ   L + +W V E+I+ LSE   L+AGDI++TGTPS V+ L  G+ V  G++G+    F +G
Sbjct:    4 FVIPVPAVPSLAIDGQDARFPLRRVYCVGRNYSEHAREMGHDPDREPPFFFGKPTDAVVPAQGE---IPYPTLTSDLHHEVELVVAIGKGGKNIAPEQALEHVWGYGVGVDLTRRDLQASAKKMGRPWDFAKGFDYSAPTTALLPVSQVGHPTES-------------------KIWLAVNGESRQTGNLNDQIWQVAEVISYLSEAVELKAGDIIYTGTPSGVSALQPGDVVTGGIDGIGEFSFTLG 229
[Close]
BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: A0A6N7DA73_9BURK (Fumarylpyruvate hydrolase n=1 Tax=Xylophilus sp. TaxID=2653893 RepID=A0A6N7DA73_9BURK)

HSP 1 Score: 244 bits (624), Expect = 2.690e-73
Identity = 125/249 (50.20%), Postives = 162/249 (65.06%), Query Frame = 2 
Query:  251 SYAVPKAAVPTLTVVGSHKRFPVRRVYCVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVG 997
            SYA+   AV +L + G  +RFP+RRV+CVG NY EHA EMG +PD++PPFFF+KP DA V   A+G V PYPP T DL HE+E++VAIG+GG  I    AL HV+ YGVGVDLTRRD+Q AAKK GRPWD +KGFD+SGP   L P ++ G                        +IWL V+G  RQ   LG+++W V ++IA LS+   LE GD++FTGTP+ V P+  G+E+  GVEG+    F +G
Sbjct:    4 SYAIAPPAVASLAIQGQPERFPLRRVFCVGRNYAEHAREMGHDPDREPPFFFSKPADAVV--PAEGTV-PYPPLTSDLHHEIELLVAIGKGGADIPAAQALEHVWGYGVGVDLTRRDLQAAAKKQGRPWDGAKGFDASGPSAPLVPASKIG-------------------HPSKGRIWLSVNGQERQAGDLGDLIWPVADVIAYLSQSVRLEPGDLIFTGTPAGVGPVQPGDEIHGGVEGVAELHFRLG 230
[Close]
BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Match: A0A3L7JAA9_9HYPH (FAA hydrolase family protein n=1 Tax=Notoacmeibacter ruber TaxID=2670375 RepID=A0A3L7JAA9_9HYPH)

HSP 1 Score: 244 bits (623), Expect = 4.030e-73
Identity = 119/241 (49.38%), Postives = 160/241 (66.39%), Query Frame = 2 
Query:  278 PTLTVVGSHKRFPVRRVYCVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVS-ADGAVVPYPPETRDLQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGRPWDCSKGFDSSGPVGALTPVTEAGSGAVSAXXXXXXXXXSFSSDEGARKIWLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAPLAIGEEVKAGVEGLEPCRFLVG 997
            P++ V G+  RFPVRR++CVG NY  HA EMG +PD++PPFFFTKP DA VD   ++ AV+PYPPET DL +EVE+ VAIG+GGR+I+P  AL HVF Y VG+DLTRRD+Q AAKK GRPWDC+KGFD S P   L P+  AG                   D    +IWL VDG  +Q++ L +++W V ++IA +S+   L+ GD++ TGTP+ V  +  G+ ++ GV+GLE     +G
Sbjct:   12 PSVAVAGTDSRFPVRRIFCVGRNYAAHAREMGNDPDREPPFFFTKPADAVVDAGRSENAVIPYPPETEDLHYEVELTVAIGKGGRNIAPDRALDHVFGYAVGLDLTRRDLQAAAKKMGRPWDCAKGFDRSAP---LAPIQPAG-----------------GYDPARGRIWLSVDGETKQEADLADLIWPVRDVIAIVSQSMELQPGDLIMTGTPAGVGAVVAGQRLEGGVDGLEEIVITIG 232
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig642.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6H3_9PHAE5.170e-11379.19FAA_hydrolase domain-containing protein n=1 Tax=Ec... [more]
A0A2U8GRV2_9RHOO1.430e-7852.075-carboxymethyl-2-hydroxymuconate isomerase n=4 Ta... [more]
B6IQ60_RHOCS2.260e-7755.33Fumarylacetoacetate (FAA) hydrolase, putative n=1 ... [more]
D7FPA3_ECTSI4.140e-7575.15Fumarylacetoacetate (FAA) hydrolase, putative n=1 ... [more]
A0A4R6EUZ1_9BURK4.570e-7551.81Fumarylpyruvate hydrolase n=1 Tax=Paraburkholderia... [more]
UPI001CD85D112.260e-7450.40fumarylacetoacetate hydrolase family protein n=2 T... [more]
A0A105VHP6_9BURK2.420e-7452.82Ureidoglycolate lyase n=72 Tax=Burkholderia TaxID=... [more]
UPI0005D454CE2.600e-7350.40fumarylacetoacetate hydrolase family protein n=1 T... [more]
A0A6N7DA73_9BURK2.690e-7350.20Fumarylpyruvate hydrolase n=1 Tax=Xylophilus sp. T... [more]
A0A3L7JAA9_9HYPH4.030e-7349.38FAA hydrolase family protein n=1 Tax=Notoacmeibact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig642contigP-littoralis_Contig642:54691..60628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog414684.RC1_0147
PFAMsFAA_hydrolase
Model size1935
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00326,RC00446
KEGG koko:K16165
KEGG ReactionR01085
KEGG Pathwayko00350,ko01100,ko01120,map00350,map01100,map01120
Hectar predicted targeting categorymitochondrion
Exons5
Evalue6.7e-82
EggNOG OGsCOG0179@1|root,COG0179@2|Bacteria,1MVFA@1224|Proteobacteria,2TRTM@28211|Alphaproteobacteria,2JRPE@204441|Rhodospirillales
Ec32 ortholog descriptionFumarylacetoacetase, C-terminal-related
Ec32 orthologEc-15_004170.1
EC3.7.1.20
DescriptionCOG0179 2-keto-4-pentenoate hydratase 2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
Cds size1014
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig642.16.1prot_P-littoralis_Contig642.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig642 54722..59738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791341.4227366-UTR-P-littoralis_Contig642:54690..547211680791341.4227366-UTR-P-littoralis_Contig642:54690..54721Pylaiella littoralis U1_48UTRP-littoralis_Contig642 54691..54721 +
1680791341.5007555-UTR-P-littoralis_Contig642:59738..606281680791341.5007555-UTR-P-littoralis_Contig642:59738..60628Pylaiella littoralis U1_48UTRP-littoralis_Contig642 59739..60628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791341.4396284-CDS-P-littoralis_Contig642:54721..550411680791341.4396284-CDS-P-littoralis_Contig642:54721..55041Pylaiella littoralis U1_48CDSP-littoralis_Contig642 54722..55041 +
1680791341.4488757-CDS-P-littoralis_Contig642:56327..564971680791341.4488757-CDS-P-littoralis_Contig642:56327..56497Pylaiella littoralis U1_48CDSP-littoralis_Contig642 56328..56497 +
1680791341.4590604-CDS-P-littoralis_Contig642:57480..576081680791341.4590604-CDS-P-littoralis_Contig642:57480..57608Pylaiella littoralis U1_48CDSP-littoralis_Contig642 57481..57608 +
1680791341.476815-CDS-P-littoralis_Contig642:58247..584691680791341.476815-CDS-P-littoralis_Contig642:58247..58469Pylaiella littoralis U1_48CDSP-littoralis_Contig642 58248..58469 +
1680791341.487627-CDS-P-littoralis_Contig642:59564..597381680791341.487627-CDS-P-littoralis_Contig642:59564..59738Pylaiella littoralis U1_48CDSP-littoralis_Contig642 59565..59738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig642.16.1

>prot_P-littoralis_Contig642.16.1 ID=prot_P-littoralis_Contig642.16.1|Name=mRNA_P-littoralis_Contig642.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=338bp
MQTIACHSPWLAGRRGLCYAAMRSARRLSSTRTTAYGEAALPGMHHPDVR
FASASSSSFSSAASSSAAEDLGPSYAVPKAAVPTLTVVGSHKRFPVRRVY
CVGSNYREHALEMGGNPDKDPPFFFTKPPDAAVDVSADGAVVPYPPETRD
LQHEVEMVVAIGRGGRSISPRDALHHVFAYGVGVDLTRRDMQRAAKKAGR
PWDCSKGFDSSGPVGALTPVTEAGSGAVSAAAAAAAAAASFSSDEGARKI
WLEVDGARRQDSLLGEMVWSVPEMIARLSELFALEAGDILFTGTPSAVAP
LAIGEEVKAGVEGLEPCRFLVGPPLSPTEKITAEPVQ*
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mRNA from alignment at P-littoralis_Contig642:54691..60628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig642.16.1 ID=mRNA_P-littoralis_Contig642.16.1|Name=mRNA_P-littoralis_Contig642.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5938bp|location=Sequence derived from alignment at P-littoralis_Contig642:54691..60628+ (Pylaiella littoralis U1_48)
CGGCAAGTTGTTCTGTTCGGTGTTGGCACAAATGCAGACGATAGCGTGCC
ATAGTCCTTGGTTGGCTGGCCGGCGAGGACTCTGCTATGCTGCCATGAGA
TCAGCTAGACGATTAAGTTCAACCCGTACAACCGCGTACGGTGAGGCAGC
ACTACCAGGGATGCATCATCCCGACGTCCGGTTCGCTTCGGCTTCTTCCT
CTTCGTTTTCTTCTGCCGCTTCATCATCAGCTGCGGAGGATCTCGGCCCC
TCGTACGCAGTGCCAAAGGCTGCTGTGCCGACCTTGACGGTAGTGGGCTC
CCACAAGAGGTTCCCCGTCAGACGCGTGTACTGCGTGGGCAGCAACTACA
GGTGCGTATTTATGTGTGGTGCGTGTGCCCGCGCAATGCAAGCAAGTGCG
CAGCCCTTGTCTCGGCCTTGTACGCGTGGATTTACACACTTGCATGATGC
ATAACACGATTGAAACTTCGAAGAATCATGTCCCACACGAATGGTTTGCA
TGTTCATACAGTACATACATATGTACATTCGTATACCGGTATGTGATATG
ACGATGAAACATGAACACAGCGAAATAACGAGCCGGTGCTTCTTTGTATC
CATTACAGCTACCTGTACTGTAGCAAATGCTGTCCGCGCTCGTTGGATAT
CATACAGCAGCCGCGTGTAAACTGTCGAGGTCGGTGGTTTTATGGCCATA
GTGTAGCCCCCTGCTGCCACGTCCGTCTCCCTGTGGCCAAAGTGCCGCCC
AAACATGTTTCCGATCATGTTTTTGTGACTAGAAAATCATGTCAGGTATC
ATTTCATCATGAAAGTTACCTCAAAGCTATGTAAGAGCCACACACCACCA
TTTCGCCAAAAAGCACACCGGCAGCAAGGCAGTACTGCTGTACGAGATTC
AAAAGAAAGTCGGGTACTGTACTGTAAAGCAGCAGTCAGTCGAGCAATTC
GATATCGTTCACCCAAAAATACTGGACGAAACGAGCTCGGCGCAGCAATT
GTGTGAGAATCGTCATTCTGACCGACAAAACACCCAAGTGTAGTACTTGG
TAGCATGAACTACCTTCTCGAGAACATTTTCTACAAGGCCCTTCCTCCAT
ACCGGTCAGAAACGAAGTGCTTCGAAGTATACTTCGGCATTATTTTCGTA
AGATACTTCTGCTGTGATATCATATGGCAGTATTTCAATCCTTCGCTGAT
ACCATATACTTCTGTATCAAGACGAAGTGCAAACGTAATGCAGAGCGAAC
AAGGGTGCCCTCAACATCACACAACTACGACCGGAGGCCTTCAAAGTTTG
GGCGTATCTCCTAACTGTGCATCATTCCCAAGTAGCTAGAGCCAAGTTTC
AAGTTTTCACACTACGTGCTGGATTCAGAACCGACCCTCTCCCATCATTT
CGCCCCGGGGACAACACAACAGCCACACTGGCTTCCGTCTCGTCTCTCCC
CCCACCCCCCCTACTTGCCGCCTCCCTCAAGCCCTCCCCCGGCTCTCCAT
CTCTCCACAAGTCCTCTCTCGCAACTTTGACCCCCCGGACTTGCCCCGAC
CCCCCCCCACACACGTCTGAAACGCCCCATCATATCGTACCACCGATAAA
CTATCGACCTTGGCTGGGGCGGATTCGGTTGCCGCAGAGAGCACGCGCTG
GAGATGGGCGGCAACCCGGACAAGGACCCGCCGTTCTTCTTCACCAAGCC
TCCGGACGCCGCCGTAGACGTCTCTGCCGACGGCGCCGTCGTCCCCTACC
CGCCGGAGACTCGAGACCTCCAGCACGAGGTGGAGATGGTCGTCGCGATC
GGGAGAGGTGTGGGCCTCACCTTTCCTACTCCCGCCGTGTACGCAAGGGG
TTCGCTAGATGGGATTATCCACTAGGCCGCAGGCTGACCTGTCTGGCTAG
TGGGTACGCCCATTGAACGGACAATAGGTCGCACGAGTTACCACTCCCTC
CTGCACCGATTCTGTCGAGCAATATTTCAAGAGCTCGCAGTATCCACAGC
AGAAAGAGGAGAGTGGGCGGGGCTGCTGTGTACTACTGTATCGAAAAGGG
TGATCGATCGGCGTGGGAGCCATCTCGTCGAGAGTTAGCTTGGAACCATC
TCGTTGCAAGTTGGCTTGGAACCATCCCGCCGAATGTTACCTCGGGACCA
TCTCGTTGAGAGTTTTGATAGTTTTCCAACAACAACGTAGACATCGTTTG
TTGTTGACGCTCTCTTCGTTGTGAGGTGCTGGCAATCGATATTTGTTTGA
AATCCGGTCCCAGGGGTCTTGTGCAACCCGCAGAACACACCCGAAACGCT
CGGCTTTTTGCTAGTTTTTCGGGCACGCGTGCACTACCAGCTTTTTTCAA
CGAAGTCTGTGTACGCACGTAGCCGAGCGAAAGGAACGACGCCTATACCA
CGAGCTTACCCAACAAATTCTGCGCATGTACGTAGCATGAAGAAGGAATT
GACGGACGCGTCGTCAACACGAACATACACGGACCTCTTGTTTTATGCAC
ACGAAGGCCAGACAAATCCTTCCGGAATACAGCAGCAGTGTAAAAGGAGT
CGTTTCGGTGGTATGATATGGTTTGACATGGTATATTTACCCCCCAACCG
TCTTGATAGTAACACACGCCACGACTACTACTGCTACTGCTGCGCTCATC
GTTCAGAGCTGGTTGGTTGCCTGTGTGACAGAGGAGGGAAAGCAAGAGCG
TGGGTGCGTTACGAACAGAGCGCTTTGCGCAACCCACCGCCACACATGAC
ATGACTACTCGCGTTCACTTTTCCCATCTTGACGTGGCAGGCGGGCGCAG
CATATCCCCACGAGACGCGCTGCACCACGTGTTCGCCTACGGCGTCGGCG
TAGACCTCACCCGGAGAGACATGCAGCGCGCCGCCAAGAAAGCGGGACGC
CCGTGGGACTGCAGCAAGGTGCGGAGCGAGGTTCCGCACGTTAGTTTGTG
GATGCCGATGGTGTTTTTTGTCGAAGTGTCGACGTTGTTAGTTGTGTTGT
TGTCACTTACAGGAGCAAGCGTTCCACCCCTTGATGTCCAATAGCAGTAC
CTCAAGTTTTCAGATTTCAGAACTGGCGAGCGTCGATTGAATGCCCCGGT
AAATGGCGGATATCACAGAAGGCATGCTTCCGGTGTGATAAGAAACGAGG
AACACAAGCGCATGAAACGCACAAGCAAACATGTATGTGTAGCAGAAAAT
TCGCCTCTTGCCAGGGTGTACTCGTGATGGCACTGAATGCATACCTGTAA
TAATGCTGTGGGTACCACAAAGTATGCACGGCGGTGTTTGTCGCTCCGCG
CGAACGGCAACGAACAGTTTTTTGGGTCTGATATTAAAAAAAAAAATGTA
TCACCAATAATGACACCCTCATGGACGGTACCGTTGTTGCGCAAAGTTTG
AACTTCTTCCAATGATTTCACATTATTTTATTTCCCTCCAGCTTCCATGT
TTTTCGAGTAGCAAGATATTGTGCCTGGTTTGTGACCACAGCTGGAAGTT
GTCTTTGAGGTAATGTGAGAATCACCAACACAAATCAACATCAACAACAA
CACACAGGGCTTTGATAGCTCGGGCCCAGTCGGTGCGCTGACGCCTGTGA
CGGAGGCGGGGAGCGGCGCGGTCAGCGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTTCTTTTTCTTCTGACGAGGGGGCACGAAAGATCTGGTTGGAGGT
GGACGGGGCGAGGAGGCAGGATTCGTTGCTCGGGGAGATGGTGTGGAGCG
TCCCCGAGATGATCGCTAGGTTATCGGAGGTGCGAGGGAGGCACACCATA
CGTTGCCCTTATTTTCTTGCGATGTGGTAGAAGCTCGCAATCCTCTGGGG
TCCACGTTCGTCGTTGCTTCGTGGAGTCCAAGGGTTGATGTGTGTGCGAG
CGTGCAAAGCAGCTTTGTTTGTAGTGCGCGCGTTGTGTTTCATCCCTCGC
GTTGTGTTGGGTCCTGAGCATCAGAGGTGTGTGTTGTCATCCCATATTCT
CTGGCACACTAGTCTGCAACTACAGGCTAGGCCCATCGACGGGGTCACAC
AGGAGGAAGGTCAACACAGGAGGAGTTATATTCGCGTGTGATACGGTGTG
ATGGTAGTTTCCAGCGTGCAAGAGATCAAGAGAATTTCGTTCTCGGGGGA
TCTCAATGCATATCGTCACAGAAGGTTGGATCATGTTTGTGTTGATATGG
TGTGTAAACCGAGCGTTGTGCAGTGCGGCAGCAAGCATCCAAACCCGTCT
TGTTTTGGCTCGCCTTCTGCGGACGCACATGTCCCCTTTTGCTCGACGGT
TGGATATTTACCGGGTTCTCACCGCAGTATTATAACCTTTGCATGCACGC
ATTTTTTGCCATCGTCATGACACCGTTCACACGCGCACGCCTTCGCAAAT
TCCTCCTTGGCTGCACAGATGCGGCCCCCACTTGAGAAACTCTTATTTTG
CTCGAGGCTCGAGGCTTACTTTCTCTCTGGGGTAACCCAAAGAGACTGTA
GGTTTATAAAGGTTTTAGTAATGTAGGGTTTAGTTGAGCACCTGCTCTTA
CGGCCAAATTCTTATTTTTCAAAAAGCTTGAGGCTGGATTTCTCAACTGC
CAATTTCTTAGGTGGTGGCCGCATCTGTACCCCCCTTTTTTGGGGCGTGG
CGCACGATTTGCCGCCCCCTACACCCGTACGGTAGTACTACTGTTACAAG
CCCGGCTCTTCACGTAGGATACGCCAACAGACACGACGGTGCACTGCGGT
TGGTGCTGTGGTTCCCCCTTTTACTGTTCCAACACTCTTCTCTCTTCACG
ACAATCTAAAACCGAAACATGATGAAGGTGCATGCTCCGCCGTTGCCCCG
CCCCCACTGCTGCCATCCTTGTAGCTCTTCGCGTTAGAGGCGGGGGACAT
CTTGTTCACCGGAACCCCTTCGGCAGTCGCACCCCTGGCGATAGGCGAGG
AGGTCAAAGCTGGAGTCGAGGGGCTGGAGCCGTGCCGATTCCTTGTTGGC
CCCCCGTTGTCGCCTACCGAAAAGATCACTGCTGAACCTGTACAGTAAGC
GTGGCCATTTGTCGATGGCACTGGTGTTGTGCAGACTATGCTCCAGGAAT
GTATGGGAAAACACTTCATTACGTGATGGTTACACGTGAACAAGAGGTTT
TGAAAACATGGGAACATACTCCTGTAGTTTTTATTTCAGTGCTTTGTACA
TGAGCAGAAGAACCTTTTGGTCCCTCCCCCCACCGTAGTTTTCGGTTTCA
ACAACGCCTTGGCACTTGTGCTTGATTGATACACTAGAGTGTTGAGTTTT
GTGCTAGTGGGCAAGATAAAAAAAAACGGTTGAAATGAACACACACATGT
TTTTGGCATTTTAAGGTTTCGTCGGCTCCCCCTCCATTCTTTACCCCTGT
TGATCGGTCAGGTGATACTTTCAGCCTTGCCTATGAGTACCCCGTTTCCC
ACGTTGGGACTCGGGATAAAATCCACGCCGTTCAGCCGTTTGCGTAGGCA
TCTCGACCAATGCCAATGGGTGGGACACTCACAAGCACCGCCGTTGGTTT
TGAAGTTACTTCATTTTGCGAAGGCACGATTGTAAATACAGATGTGTGTT
GCGAGGTACTGTCCGTGTATGGTTGCAACGTACTTTTTGGAACAGAACGA
TGACAAAAGTATGCGATTCTCAAGATCATGTTGCTTGCGAAGGTTGGTCC
GGGCATTCTTCGGAAACCATAGAGTGACGCCCCACTTTCGATCATCGAGA
CCCTTGAAGAAAACGCTGTCAGGTAGGTGTGCAAGAAAATATGTTCGTAC
GTACTGCACACCAATGGGAGCCGGAACACCTTCATTCGAATCCGAGACCG
GATTTCAAGTATATTTCGCAAAAATACACGAACGCGATTTTTGGTGACTG
ACCAACCAGTCCACTACCGTATTCGACGAAAGAACGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig642:54691..60628+

>mRNA_P-littoralis_Contig642.16.1 ID=mRNA_P-littoralis_Contig642.16.1|Name=mRNA_P-littoralis_Contig642.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1014bp|location=Sequence derived from alignment at P-littoralis_Contig642:54691..60628+ (Pylaiella littoralis U1_48)
ATGCAGACGATAGCGTGCCATAGTCCTTGGTTGGCTGGCCGGCGAGGACT
CTGCTATGCTGCCATGAGATCAGCTAGACGATTAAGTTCAACCCGTACAA
CCGCGTACGGTGAGGCAGCACTACCAGGGATGCATCATCCCGACGTCCGG
TTCGCTTCGGCTTCTTCCTCTTCGTTTTCTTCTGCCGCTTCATCATCAGC
TGCGGAGGATCTCGGCCCCTCGTACGCAGTGCCAAAGGCTGCTGTGCCGA
CCTTGACGGTAGTGGGCTCCCACAAGAGGTTCCCCGTCAGACGCGTGTAC
TGCGTGGGCAGCAACTACAGAGAGCACGCGCTGGAGATGGGCGGCAACCC
GGACAAGGACCCGCCGTTCTTCTTCACCAAGCCTCCGGACGCCGCCGTAG
ACGTCTCTGCCGACGGCGCCGTCGTCCCCTACCCGCCGGAGACTCGAGAC
CTCCAGCACGAGGTGGAGATGGTCGTCGCGATCGGGAGAGGCGGGCGCAG
CATATCCCCACGAGACGCGCTGCACCACGTGTTCGCCTACGGCGTCGGCG
TAGACCTCACCCGGAGAGACATGCAGCGCGCCGCCAAGAAAGCGGGACGC
CCGTGGGACTGCAGCAAGGGCTTTGATAGCTCGGGCCCAGTCGGTGCGCT
GACGCCTGTGACGGAGGCGGGGAGCGGCGCGGTCAGCGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTTCTTTTTCTTCTGACGAGGGGGCACGAAAGATC
TGGTTGGAGGTGGACGGGGCGAGGAGGCAGGATTCGTTGCTCGGGGAGAT
GGTGTGGAGCGTCCCCGAGATGATCGCTAGGTTATCGGAGCTCTTCGCGT
TAGAGGCGGGGGACATCTTGTTCACCGGAACCCCTTCGGCAGTCGCACCC
CTGGCGATAGGCGAGGAGGTCAAAGCTGGAGTCGAGGGGCTGGAGCCGTG
CCGATTCCTTGTTGGCCCCCCGTTGTCGCCTACCGAAAAGATCACTGCTG
AACCTGTACAGTAA
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