mRNA_P-littoralis_Contig642.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig642.25.1
Unique NamemRNA_P-littoralis_Contig642.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig642.25.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.350e-21
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    7 DVDIVRSVAQFVSDKQFLFFAPVATVWRDAWKGGGRPPMTNCITSDSTVPQLLYSFECGLPSNGFDICRSIALGGNLRLLQCARQKGFSW 276
            +VD++RS+ +FV++KQFLFFAPV+  WR+AW  G RP +T+ +T DS+V QL YSFE GLP +  ++C +IA  GNL LL+ AR  G +W
Sbjct:   60 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAW--GCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAW 147
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BLAST of mRNA_P-littoralis_Contig642.25.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.240e-17
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 MTDVDIVRSVAQFVSDKQFLFFAPVATVWRDAWKGGGRPPMTNCITSDSTVPQLLYSFECGLPSNGFDICRSIALGGNLRLLQCARQKGFSW 276
            MT++DIV  +AQFV DKQFLFFA V+  WRDAW  G R  +T+ +T  +T  QL YSF CGL  +G D C + A  GNL LL+ A ++G  W
Sbjct:   20 MTNMDIVHGLAQFVLDKQFLFFAAVSRSWRDAW--GERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPW 109
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BLAST of mRNA_P-littoralis_Contig642.25.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.370e-16
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:   10 VDIVRSVAQFVSDKQFLFFAPVATVWRDAWKGGGRPPMTNCITSDSTVPQLLYSFECGLPSNGFDICRSIALGGNLRLLQCARQKGFSW 276
            VDIV +VA+FV D Q+LFFA V+  WRD W  G RP +T  +T+D++VPQL  SFECGL      +C ++A  G L LL+ AR  G  W
Sbjct:    7 VDIVSTVAEFVDDNQYLFFASVSRGWRDVW--GKRPTVTKALTADTSVPQLSLSFECGLRRTAA-VCETVAGLGRLDLLRRARAMGCQW 92
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BLAST of mRNA_P-littoralis_Contig642.25.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.310e-8
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:    1 MTDVDIVRSVAQFVSDKQFLFFAPVATVWRDAWKGGGRPPMTNCITSDSTVPQLLYSFECGLPSNGFDICRSIALGGNLRLLQCARQKGFSW 276
            +T++DIVR +A+FV+DKQFLFFAPV+  WR A  G GR                   F CGL   G D C + A   NL LL+ A ++G+ W
Sbjct:   23 VTNMDIVRGLARFVADKQFLFFAPVSRSWR-ARGGSGR------------------RFACGLARGGVDWCSTTARAVNLDLLRWATKQGYPW 95
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BLAST of mRNA_P-littoralis_Contig642.25.1 vs. uniprot
Match: D8LGC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.460e-8
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   28 VAQFVSDKQFLFFAPVATVWRDAWKGGGRPPMTNCITSDSTVPQLLYSFECGLPS-----NGFDICRSIALGGNLRLLQCARQK 264
            +A+FV DKQ+LFFAPV+  WR AW  GGRP +T+  T  +++ QL +S +CGL       NG  +  S+A  G++ LL+ A +K
Sbjct:    1 MAEFVGDKQYLFFAPVSQDWRSAW--GGRPTVTSYATPYTSLSQLRWSLDCGLKKEKGVQNG-RVLSSLARTGDVGLLEVAHKK 81
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BLAST of mRNA_P-littoralis_Contig642.25.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-6
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:   28 VAQFVSDKQFLFFAPVATVWRDAWKGGGRPPMTNCITSDSTVPQLLYSFECGLPSN--GFDICRSIALGGNLRLLQCARQKGFSW 276
            +A+FV   Q+LF APV+  +R AW  G R  +T  + +D++V QL Y  E GLPS+     IC + A  G L LL+ A++    W
Sbjct:    4 LAEFVDQDQYLFIAPVSKAFRRAW--GPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQESACGW 86
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BLAST of mRNA_P-littoralis_Contig642.25.1 vs. uniprot
Match: A0A6H5K3L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 8.130e-6
Identity = 34/84 (40.48%), Postives = 46/84 (54.76%), Query Frame = 1 
Query:   31 AQFVSDKQFLFFAPVATVWRDAWKGGGRPPMTNCITSDSTVPQLLYSFECGLPSN--GFDICRSIALGGNLRLLQCARQKGFSW 276
            A+FV   Q+LF APV   +R AW  G R  +T  + +D++V QL Y  E GLPS+     IC + A  G L LL+ A+     W
Sbjct:    5 AEFVDQDQYLFIAPVLKAFRRAW--GPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQGSACGW 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig642.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KPZ6_9PHAE6.350e-2153.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH49_ECTSI1.240e-1752.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE2.370e-1650.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDL5_9PHAE1.310e-842.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGC4_ECTSI1.460e-844.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G822_ECTSI1.270e-640.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3L5_9PHAE8.130e-640.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig642contigP-littoralis_Contig642:111406..112389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJY0
PFAMsAnk_2,Ank_4
Model size984
Max annot lvl2759|Eukaryota
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-08
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size984
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791341.0992277-CDS-P-littoralis_Contig642:111405..1123891680791341.0992277-CDS-P-littoralis_Contig642:111405..112389Pylaiella littoralis U1_48CDSP-littoralis_Contig642 111406..112389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig642.25.1prot_P-littoralis_Contig642.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig642 111406..112389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig642.25.1

>prot_P-littoralis_Contig642.25.1 ID=prot_P-littoralis_Contig642.25.1|Name=mRNA_P-littoralis_Contig642.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=328bp
MTDVDIVRSVAQFVSDKQFLFFAPVATVWRDAWKGGGRPPMTNCITSDST
VPQLLYSFECGLPSNGFDICRSIALGGNLRLLQCARQKGFSWGYGVCNLA
AKGGHLAMLQWAAANGCPWEHRQVCNHAALGGHPAVLEWVRASGLPWGAS
ICSHAAEGGHLDVLRLVRENGCPWDEDTCPYAAWRGHLGVLIWAREHGCP
WDERTCHAAASGGHLGILKWAREHGCPWDENTCYFAAREGNLSVLLWAHE
NGCLWDEATCAAAADGGHLKVLQSVRECGCPWDEETCLRAARRGRLAVLQ
WARDNDCPWDEETCPAAAREGHMGVLKW
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mRNA from alignment at P-littoralis_Contig642:111406..112389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig642.25.1 ID=mRNA_P-littoralis_Contig642.25.1|Name=mRNA_P-littoralis_Contig642.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=984bp|location=Sequence derived from alignment at P-littoralis_Contig642:111406..112389+ (Pylaiella littoralis U1_48)
ATGACCGACGTTGATATCGTCCGCAGCGTGGCGCAATTCGTAAGCGACAA
GCAGTTCCTGTTCTTTGCGCCAGTTGCGACAGTCTGGAGAGACGCGTGGA
AGGGCGGGGGGCGCCCACCGATGACGAACTGCATTACCTCCGACTCCACC
GTGCCCCAACTGCTGTACAGCTTCGAGTGCGGCCTGCCTAGTAACGGTTT
TGACATTTGCAGGAGCATCGCGCTCGGGGGAAACCTGAGGTTACTGCAGT
GTGCCCGTCAAAAAGGGTTTTCTTGGGGCTATGGCGTTTGTAATCTGGCT
GCTAAGGGAGGGCATCTGGCCATGCTTCAGTGGGCAGCAGCAAATGGCTG
CCCTTGGGAACACCGACAAGTGTGTAATCACGCGGCTTTGGGAGGGCATC
CGGCCGTTTTGGAGTGGGTGAGGGCGAGTGGTCTCCCTTGGGGCGCAAGC
ATCTGCTCGCACGCAGCCGAAGGTGGCCATCTAGACGTCCTCCGGTTGGT
GAGAGAGAACGGGTGTCCTTGGGACGAAGACACGTGCCCCTACGCTGCGT
GGAGAGGGCACCTGGGCGTACTGATCTGGGCTAGGGAACACGGTTGCCCG
TGGGACGAAAGAACGTGCCACGCGGCCGCCAGTGGTGGCCACCTCGGCAT
CCTCAAGTGGGCAAGGGAACACGGTTGCCCATGGGACGAGAACACGTGCT
ATTTTGCCGCGCGGGAAGGGAACCTTTCGGTCCTGTTGTGGGCCCACGAG
AACGGCTGTCTTTGGGACGAAGCCACCTGCGCTGCAGCTGCCGACGGAGG
GCATCTCAAGGTTCTACAGTCGGTGCGAGAATGCGGGTGTCCGTGGGACG
AAGAGACGTGCCTCCGGGCTGCAAGAAGAGGGCGACTGGCCGTTTTGCAG
TGGGCAAGAGACAATGACTGCCCCTGGGACGAAGAAACATGCCCTGCAGC
CGCCAGAGAAGGCCACATGGGTGTCCTCAAGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig642:111406..112389+

>mRNA_P-littoralis_Contig642.25.1 ID=mRNA_P-littoralis_Contig642.25.1|Name=mRNA_P-littoralis_Contig642.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=984bp|location=Sequence derived from alignment at P-littoralis_Contig642:111406..112389+ (Pylaiella littoralis U1_48)
ATGACCGACGTTGATATCGTCCGCAGCGTGGCGCAATTCGTAAGCGACAA
GCAGTTCCTGTTCTTTGCGCCAGTTGCGACAGTCTGGAGAGACGCGTGGA
AGGGCGGGGGGCGCCCACCGATGACGAACTGCATTACCTCCGACTCCACC
GTGCCCCAACTGCTGTACAGCTTCGAGTGCGGCCTGCCTAGTAACGGTTT
TGACATTTGCAGGAGCATCGCGCTCGGGGGAAACCTGAGGTTACTGCAGT
GTGCCCGTCAAAAAGGGTTTTCTTGGGGCTATGGCGTTTGTAATCTGGCT
GCTAAGGGAGGGCATCTGGCCATGCTTCAGTGGGCAGCAGCAAATGGCTG
CCCTTGGGAACACCGACAAGTGTGTAATCACGCGGCTTTGGGAGGGCATC
CGGCCGTTTTGGAGTGGGTGAGGGCGAGTGGTCTCCCTTGGGGCGCAAGC
ATCTGCTCGCACGCAGCCGAAGGTGGCCATCTAGACGTCCTCCGGTTGGT
GAGAGAGAACGGGTGTCCTTGGGACGAAGACACGTGCCCCTACGCTGCGT
GGAGAGGGCACCTGGGCGTACTGATCTGGGCTAGGGAACACGGTTGCCCG
TGGGACGAAAGAACGTGCCACGCGGCCGCCAGTGGTGGCCACCTCGGCAT
CCTCAAGTGGGCAAGGGAACACGGTTGCCCATGGGACGAGAACACGTGCT
ATTTTGCCGCGCGGGAAGGGAACCTTTCGGTCCTGTTGTGGGCCCACGAG
AACGGCTGTCTTTGGGACGAAGCCACCTGCGCTGCAGCTGCCGACGGAGG
GCATCTCAAGGTTCTACAGTCGGTGCGAGAATGCGGGTGTCCGTGGGACG
AAGAGACGTGCCTCCGGGCTGCAAGAAGAGGGCGACTGGCCGTTTTGCAG
TGGGCAAGAGACAATGACTGCCCCTGGGACGAAGAAACATGCCCTGCAGC
CGCCAGAGAAGGCCACATGGGTGTCCTCAAGTGG
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