mRNA_P-littoralis_Contig641.35.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 171 bits (433), Expect = 4.930e-44 Identity = 88/189 (46.56%), Postives = 119/189 (62.96%), Query Frame = 1
Query: 4 VLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEIDQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDDTRRSLHRVL 570
+L VYVDD L G + V+ ++ QL F M+D G A L+LGMEI Q G I +SQ YV ++L+++ + PA TPG+G + +PE A +L + + K YQ VGSL +L NTTRW+I YAVM+L RGM PT+QHMV AKRVLRYL G PD+P R+G L+ + D+ FA + + L L
Sbjct: 1083 ILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKLQHQL 1271
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5JN29_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN29_9PHAE) HSP 1 Score: 159 bits (401), Expect = 9.210e-42 Identity = 86/195 (44.10%), Postives = 114/195 (58.46%), Query Frame = 1
Query: 4 VLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEI--DQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDDTRRSLHRVLVHVG 582
+L++YVDD+L+ G V + + LM +F M D+G LV+G+E+ D + G + ISQ Y R +L+R+G QANP TPG G LS + L + + +Q GSL YL +R+D+SYAV LTR A P HM AAK VL YL GTPDLP V++KG L FTDS F A+ D RS L +G
Sbjct: 205 ILAIYVDDILITGGNKEIVSRKKKDLMDSFDMIDMGEVKLVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQTITGSLLYLAQCSRYDLSYAVHQLTRACANPAQVHMAAAKHVLWYLGGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLG 399
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.510e-41 Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = 1
Query: 4 VLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEIDQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRK 489
+L VYVD+ L G + V+ + QL F+M+D G A L+LGMEI Q+ G I +SQ YV ++L ++ + PA TPG+G + +PE A +L + K YQ VGSL +L +TTRW+I YAVM+L RGM PTDQHMV AKRVLRYL G PD+P R+
Sbjct: 99 ILCVYVDNCTLAGRTPSVVQDWKKQLSDKFNMTDGGPAELLLGMEIYQRDGDITVSQHKYVTNILNKYQMVDCKPAATPGSGPEIEQEPENAIYLSDEDKKPYQGIVGSLLFLTHTTRWEIGYAVMVLCRGMNKPTDQHMVGAKRVLRYLRGCPDMPLKFRR 260
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 160 bits (406), Expect = 9.080e-41 Identity = 86/195 (44.10%), Postives = 116/195 (59.49%), Query Frame = 1
Query: 4 VLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEI--DQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDDTRRSLHRVLVHVG 582
+L++YVDD+L+ G V + + +LM +F M+D+G V+G+E+ D + G + ISQ Y R +L+R+G QANP TPG G LS + L + + +Q GSL YL TR+D+SYAV LTR A P HM AAK +LRYL GTPDLP V++KG L FTDS F A+ D RS L +G
Sbjct: 412 ILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLG 606
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.640e-40 Identity = 78/187 (41.71%), Postives = 112/187 (59.89%), Query Frame = 1
Query: 1 IVLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEI--DQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDDTRRS 555
++L+VYVDD+L+ G V + + +L F M+D+G +LG+++ D + G + ISQ HYV ++LERFG +ANP TPG G +S L + K YQ GS+ YL TR+D+SYA + L++ + P +M AAK VLRYL G P LP V+++G L +FTDS F A+ D RS
Sbjct: 51 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRS 237
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 160 bits (406), Expect = 2.000e-40 Identity = 86/195 (44.10%), Postives = 115/195 (58.97%), Query Frame = 1
Query: 4 VLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEI--DQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDDTRRSLHRVLVHVG 582
+L++YVDD+L+ G V + +LM +F M+D+G V+G+E+ D + G + ISQ Y R +L+R+G QANP TPG G LS + L + + +Q GSL YL TR+D+SYAV LTR A P HM AAK +LRYL GTPDLP V++KG L FTDS F A+ D RS L +G
Sbjct: 1191 ILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLG 1385
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE) HSP 1 Score: 152 bits (385), Expect = 4.980e-40 Identity = 83/195 (42.56%), Postives = 112/195 (57.44%), Query Frame = 1
Query: 4 VLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEI--DQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDDTRRSLHRVLVHVG 582
+L++YVDD+L+ G V + +LM +F M+D+G V+G+ + D + G + ISQ Y R + +R+G QANP TPG G LS + L + + +Q GSL YL TR+D SYAV L R A P HM AAK +LRYL GTPDLP V++KG L FTDS F A+ D RS+ L +G
Sbjct: 101 ILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSITGYLFFLG 295
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE) HSP 1 Score: 152 bits (384), Expect = 5.700e-40 Identity = 79/198 (39.90%), Postives = 115/198 (58.08%), Query Frame = 1
Query: 1 IVLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEI--DQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDDTRRSLHRVLVHVGWW 588
++L+VYVDD+L+ G V + + +L F M+D+G +LG+++ D + G + ISQ HYV ++LERFG +ANP TPG G +S L + K YQ GS+ YL TR+D+SYA + L++ + P +M AAK VLRYL G P LP V+++G L +FTDS F A+ D RS + + W
Sbjct: 126 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYISLLSGW 323
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 158 bits (399), Expect = 7.060e-40 Identity = 79/168 (47.02%), Postives = 108/168 (64.29%), Query Frame = 1
Query: 40 GVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEIDQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDD 543
G + V+ ++ QL F M+D G A L+LGMEI Q G I +SQ YV ++L+++ + PA TPG+G + +PE A +L + + K YQ VGSL +L NTTRW+I YAVM+L RGM PT+QHMV AKRVLRYL G PD+P R+G L+ + D+ FA +
Sbjct: 395 GKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSE 562
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE) HSP 1 Score: 152 bits (384), Expect = 1.060e-39 Identity = 79/187 (42.25%), Postives = 111/187 (59.36%), Query Frame = 1
Query: 1 IVLSVYVDDVLLLGVQSAEVKKVRMQLMSTFSMSDLGTASLVLGMEI--DQQPGCIEISQAHYVRSVLERFGFLQANPAHTPGAGKPLSNKPEGAHFLDKAETKTYQEGVGSLTYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHRKGDMTLQSFTDSDFAADDDTRRS 555
++L+VYVDD+L+ G V + + +L F M+D+G +LG+ + D + G + ISQ HYV ++LERFG +ANP TPG G +S L E K YQ GS+ YL TR+D+SYA + L++ + P +M AAK VLRYL G P LP V+++G L +FTDS F A+ D RS
Sbjct: 51 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRS 237 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig641.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig641.35.1 >prot_P-littoralis_Contig641.35.1 ID=prot_P-littoralis_Contig641.35.1|Name=mRNA_P-littoralis_Contig641.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=190bp MQLMSTFSMSDLGTASLVLGMEIDQQPGCIEISQAHYVRSVLERFGFLQAback to top mRNA from alignment at P-littoralis_Contig641:129167..130115- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig641.35.1 ID=mRNA_P-littoralis_Contig641.35.1|Name=mRNA_P-littoralis_Contig641.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=949bp|location=Sequence derived from alignment at P-littoralis_Contig641:129167..130115- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig641:129167..130115- >mRNA_P-littoralis_Contig641.35.1 ID=mRNA_P-littoralis_Contig641.35.1|Name=mRNA_P-littoralis_Contig641.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=570bp|location=Sequence derived from alignment at P-littoralis_Contig641:129167..130115- (Pylaiella littoralis U1_48)back to top |