mRNA_P-littoralis_Contig641.34.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 2.980e-21 Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
TG+LF LGGG+IS A Q + +Q+T EAEL AL ++RE VY+ NF+ +G + + + SDS AL++ S +MFSSRTKHIA + LR+L I ++H P++ L+D TK +PK F
Sbjct: 162 TGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRF 285
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5K4K1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K1_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 2.350e-20 Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
TG+LF LGGG+IS A Q + +Q+T EAEL AL ++RE VY+ NF+ +G + + + SDS A G +MFSSRTKHIA + LR+L I ++H P + L+D TK +PK F
Sbjct: 47 TGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGACDCGQHAMFSSRTKHIALQFFFLRELTKGHRITLHHQPGATILADIATKHLPKQRF 170
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 2.690e-20 Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
TG+LF LGGG+IS A Q + +Q+T EAEL AL ++RE VY+ NF+ +G + + + SDS AL++ S +MFSSRTKHIA + LR+L I ++H P++ L+D TK +PK F
Sbjct: 599 TGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRF 722
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 2.800e-20 Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
TG+LF LGGG+IS A Q + +Q+T EAEL AL ++RE VY+ NF+ +G + + + SDS AL++ S +MFSSRTKHIA + LR+L I ++H P++ L+D TK +PK F
Sbjct: 758 TGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRF 881
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6D2L4J7_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L4J7_9BRAS) HSP 1 Score: 90.1 bits (222), Expect = 2.380e-19 Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVP 583
+G++F +GG +S + LQ VV+ STTEAE A A +EG+++ L+ +G+ ++ DSQSA+ L + F RTKH+ATK H +R +++E + V I TS+ +D LTK +P
Sbjct: 32 SGYIFTVGGNTVSWKSCLQSVVALSTTEAEYIAFSEAVKEGIWICGLLEDMGLKPEKATVWCDSQSAICLSKNNAFHERTKHVATKYHFIRDIIEEGEVEVLKIHTSVNPADMLTKGIP 150
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 5.930e-19 Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGV-SITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPK 586
TG+LF LGGG+IS A Q + +Q+T EAEL AL ++RE VY+ NF+ +G + + + SDS AL++ S +MFSSRTKHIA + L +L I ++H P++ L+D TK +PK
Sbjct: 676 TGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHHQPSATMLADIATKHLPK 796
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6D2J922_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J922_9BRAS) HSP 1 Score: 92.8 bits (229), Expect = 1.570e-18 Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
TG++F +GG V+S + LQ+VV+ STTEAE AL A +EG++L ++ LG ++ DSQSA+ L ++F RTKH+A K H +R + T+ + IPT +D LTK +P F
Sbjct: 358 TGYVFRVGGNVVSWKSNLQQVVALSTTEAEYIALSEAVKEGIWLRGLVEELGFKQEATDIWCDSQSAICLAKNNVFHERTKHVAVKYHFIRDETEVGTVKIQKIPTERNPADMLTKVIPVQKF 480
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A5BC16_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BC16_VITVI) HSP 1 Score: 89.4 bits (220), Expect = 1.720e-18 Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTV 580
TGF+F LGG IS A+ LQK+V+ STTEAE A A +E ++L FL LG L SDSQSA+ L S F S++KHI TK H +R LV++ +++ I S L++ LTK V
Sbjct: 90 TGFVFTLGGTAISWASNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNLANMLTKGV 207
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A438KLS3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KLS3_VITVI) HSP 1 Score: 87.8 bits (216), Expect = 1.150e-17 Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSITTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTV 580
TGF+F LGG IS + LQK+V+ STTEAE A A +E ++L FL LG L SDSQSA+ L S+F S++KHI TK H +R LV++ +++ I S +D LTK V
Sbjct: 120 TGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSVFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTKGV 237
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Match: A0A6H5KSX7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX7_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.270e-17 Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 2
Query: 227 TGFLFMLGGGVISSAAVLQKVVSQSTTEAELTALHAASREGVYLLNFLK*LGVSI-TTFHLFSDSQSALSLGSQSMFSSRTKHIATKSHLLRQLVDESTIVVNHIPTSLQLSDCLTKTVPKPAF 595
TG+LF +GG +IS A Q + +Q+T EAEL AL ++RE VY+ NF+ + I + + SDS AL++ S +MFSSRTKHIA + LR+ E I ++H P+ L+D TK +PK F
Sbjct: 618 TGYLFFVGGRLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIVFKIFRSVPINSDSTVALTVASNAMFSSRTKHIALRFFFLREPTKEHRITLHHQPSDTMLADIATKHLPKQRF 741 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig641.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig641.34.1 >prot_P-littoralis_Contig641.34.1 ID=prot_P-littoralis_Contig641.34.1|Name=mRNA_P-littoralis_Contig641.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=103bp MYLVNTTRWDISYAVMILTRGMAAPTDQHMVAAKRVLRYLWGTPDLPTVHback to top mRNA from alignment at P-littoralis_Contig641:126333..126927+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig641.34.1 ID=mRNA_P-littoralis_Contig641.34.1|Name=mRNA_P-littoralis_Contig641.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=595bp|location=Sequence derived from alignment at P-littoralis_Contig641:126333..126927+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig641:126333..126927+ >mRNA_P-littoralis_Contig641.34.1 ID=mRNA_P-littoralis_Contig641.34.1|Name=mRNA_P-littoralis_Contig641.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=309bp|location=Sequence derived from alignment at P-littoralis_Contig641:126333..126927+ (Pylaiella littoralis U1_48)back to top |