mRNA_P-littoralis_Contig640.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig640.43.1
Unique NamemRNA_P-littoralis_Contig640.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig640.43.1 vs. uniprot
Match: A0A6H5K433_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K433_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.640e-10
Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 RGVEIGNEDDLQNALGSQVCVNARIFSVIRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYG 207
            RG+++ N++ LQ  +G  V    +    +R++SG+N+  F PVGN+  +SV D FDL C++++ +L +G
Sbjct:    8 RGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFG 76
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BLAST of mRNA_P-littoralis_Contig640.43.1 vs. uniprot
Match: A0A6H5L5C2_9PHAE (C3H1-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.000e-10
Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 RGVEIGNEDDLQNALGSQVCVNARIFSVIRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYG 207
            RG+++ N++ LQ  +G  V    +    +R++SG+N+  F PVGN+  +SV D FDL C++++ +L +G
Sbjct:  221 RGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGKLSVPDHFDLTCAAIVNVLKFG 289
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BLAST of mRNA_P-littoralis_Contig640.43.1 vs. uniprot
Match: A0A6H5K7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.010e-10
Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 RGVEIGNEDDLQNALGSQVCVNARIFSVIRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYG 207
            RG+++ N++ LQ  +G  V    +    +R++SG+N+  F PVGN+  +SV D FDL C++++ +L +G
Sbjct:  221 RGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFG 289
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BLAST of mRNA_P-littoralis_Contig640.43.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.220e-10
Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 RGVEIGNEDDLQNALGSQVCVNARIFSVIRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYG 207
            RG+++ N++ LQ  +G  V    +    +R++SG+N+  F PVGN+  +SV D FDL C++++ +L +G
Sbjct: 1684 RGIDVPNKETLQTMMGGTVTGTDKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFG 1752
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BLAST of mRNA_P-littoralis_Contig640.43.1 vs. uniprot
Match: A0A6H5K5G9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 8.400e-10
Identity = 24/69 (34.78%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 RGVEIGNEDDLQNALGSQVCVNARIFSVIRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYG 207
            RG+++  ++ LQ  +G  V    +    +R++SG+N+  F PVGN+  +SV D FDL C++++ +L +G
Sbjct:    8 RGIDVPKKETLQTMMGGTVTGTVKTLQQLRTMSGLNVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFG 76
[Close]
BLAST of mRNA_P-littoralis_Contig640.43.1 vs. uniprot
Match: A0A6H5K9I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.880e-9
Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 RGVEIGNEDDLQNALGSQVCVNARIFSVIRSLSGINITSFAPVGNAASISVEDQFDLACSSVMTLLTYG 207
            RG+++ N++ LQ+ +G  V    R    +R++SG+ +  F PVGN+  +SV D FDL C++++ +L +G
Sbjct:  244 RGIDVPNKETLQSMMGGTVTGTDRTLQQLRTMSGLIVLDFFPVGNSGELSVPDHFDLTCAAIVNVLKFG 312
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig640.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K433_9PHAE2.640e-1036.23C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L5C2_9PHAE4.000e-1036.23C3H1-type domain-containing protein n=3 Tax=Ectoca... [more]
A0A6H5K7F0_9PHAE4.010e-1036.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN35_9PHAE4.220e-1036.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5G9_9PHAE8.400e-1034.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9I5_9PHAE1.880e-936.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig640contigP-littoralis_Contig640:165948..166202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791339.2793756-CDS-P-littoralis_Contig640:165947..1662021680791339.2793756-CDS-P-littoralis_Contig640:165947..166202Pylaiella littoralis U1_48CDSP-littoralis_Contig640 165948..166202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig640.43.1prot_P-littoralis_Contig640.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig640 165948..166202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig640.43.1

>prot_P-littoralis_Contig640.43.1 ID=prot_P-littoralis_Contig640.43.1|Name=mRNA_P-littoralis_Contig640.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
RGVEIGNEDDLQNALGSQVCVNARIFSVIRSLSGINITSFAPVGNAASIS
VEDQFDLACSSVMTLLTYGPRGDDIGVDARCDARL
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mRNA from alignment at P-littoralis_Contig640:165948..166202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig640.43.1 ID=mRNA_P-littoralis_Contig640.43.1|Name=mRNA_P-littoralis_Contig640.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig640:165948..166202+ (Pylaiella littoralis U1_48)
CGGGGAGTGGAGATCGGGAACGAAGACGACCTCCAGAACGCGCTCGGCAG
CCAAGTATGCGTCAACGCCCGCATATTTTCGGTGATTCGGTCGTTGTCCG
GCATCAACATTACTTCCTTCGCGCCTGTTGGCAACGCCGCCTCCATTTCA
GTCGAGGACCAGTTCGACCTCGCTTGCAGTTCAGTGATGACACTGCTCAC
ATATGGCCCCCGGGGTGACGACATCGGGGTCGACGCTCGGTGTGACGCTC
GACTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig640:165948..166202+

>mRNA_P-littoralis_Contig640.43.1 ID=mRNA_P-littoralis_Contig640.43.1|Name=mRNA_P-littoralis_Contig640.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig640:165948..166202+ (Pylaiella littoralis U1_48)
CGGGGAGTGGAGATCGGGAACGAAGACGACCTCCAGAACGCGCTCGGCAG
CCAAGTATGCGTCAACGCCCGCATATTTTCGGTGATTCGGTCGTTGTCCG
GCATCAACATTACTTCCTTCGCGCCTGTTGGCAACGCCGCCTCCATTTCA
GTCGAGGACCAGTTCGACCTCGCTTGCAGTTCAGTGATGACACTGCTCAC
ATATGGCCCCCGGGGTGACGACATCGGGGTCGACGCTCGGTGTGACGCTC
GACTG
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