mRNA_P-littoralis_Contig640.41.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5KF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.340e-23 Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 3
Query: 195 LSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRFIAPYAI 605
L RV ++ KA+ A TR L L LLG + L DFL + +TP + DI +E+ +HE + K RK+R W +L+ GGF + +ARAFQES WY L F+TGPRR + T+ +F +I+RF+APY +
Sbjct: 78 LMSRVMWRFTKAYQASTRKTLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSADARAFQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYYV 214
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5K5R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.110e-23 Identity = 58/137 (42.34%), Postives = 81/137 (59.12%), Query Frame = 3
Query: 195 LSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRFIAPYAI 605
L R+ ++ KAH A TR L L LLG + L DFL + +TP + DI +E+ +HE + K RK+R W +L+ GGF + NARAFQES WY L F+TGPRR + T+ +F +I+RF+APY +
Sbjct: 335 LMSRIMWRFTKAHQASTRKALTLGFLLGPERLKDDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANARAFQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYFV 471
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5K1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE) HSP 1 Score: 105 bits (262), Expect = 2.850e-22 Identity = 60/139 (43.17%), Postives = 79/139 (56.83%), Query Frame = 3
Query: 183 AVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRFIAPY 599
A+N L HRV +Y KAH TR +L L+G D L DFLA+ G L E V K RKAR W RL+NGG+ + NA+AFQE WY++ F+TGPRR A G+ T+ + +F N I+RF++PY
Sbjct: 4 AINTLLHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQI-------GTL-------------ESVVCKCTRKARAWGRLSNGGYSSTNAKAFQEGFWYSMLQFMTGPRRHASGILTIPKSDFGNPKIMRFLSPY 122
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5KR20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE) HSP 1 Score: 105 bits (261), Expect = 3.420e-21 Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 3
Query: 195 LSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRFIAPYAI 605
L R+ ++ KAH A TR L L LLG + L DFL + +TP + DI +E+ +HE + K RK++ W +L+ GG + NARAFQES WY L F+TGPRR + T+ +F +I+RF+A Y +
Sbjct: 185 LMFRIMWRFTKAHQASTRKVLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVIRKSKAWIKLSAGGIGSANARAFQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLARYYV 321
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5KEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE) HSP 1 Score: 102 bits (254), Expect = 3.570e-20 Identity = 58/140 (41.43%), Postives = 79/140 (56.43%), Query Frame = 3
Query: 183 AVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRFIAPYA 602
A+N L HRV +Y KAH TR +L L+G D L DFLA+ G L E V K RKAR W RL+NGG+ + NA+AFQE WY++ F+TGPRR G+ T+ + ++ N I+RF++P+A
Sbjct: 239 AINTLLHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQI-------GTL-------------ESVVCKCTRKARAWGRLSNGGYSSTNAKAFQEGFWYSMLQFMTGPRRHVSGILTIPKSDYGNPKIMRFLSPHA 358
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5K4A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 6.230e-19 Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 3
Query: 183 AVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRF 587
A+N L HRV +Y KAH TR +L L+G D L DFLA+ G L E V K RKAR W RL+NGG+ + NA+AFQE WY++ F+TGPRR G+ T+ + ++ + I+RF
Sbjct: 34 AINTLLHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQI-------GTL-------------ESVVCKCTRKARAWGRLSNGGYSSTNAKAFQEGFWYSMLQFMTGPRRHVSGILTIPKSDYGHPKIMRF 148
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5JUE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE1_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.820e-18 Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 3
Query: 183 AVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRFIAPYA 602
A+N L HRV +Y KAH TR +L L+G D L D LA+ G L E V K RKAR W RL+NGG+ + NA+AFQ WY++ F+TGPRR A G+ T+ ++ N I+RF++P+A
Sbjct: 173 AINTLLHRVMWRYTKAHMQSTREDLFEWQLVGEDRLHEDSLAQI-------GTL-------------ESVVCKCTRKARAWGRLSNGGYSSTNAKAFQVGFWYSMLQFMTGPRRHASGILTIPNSDYGNPKIMRFLSPHA 292
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5KA09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA09_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 6.950e-18 Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 3
Query: 315 ITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRFIAPYA 602
+TP + DI E+ S E V K RKAR WARL+NGG+ + NA+AFQE WY++ F+TGPRR+A G+ T+ + ++ N I+RF++P+A
Sbjct: 110 VTPALLHAAKDIAALPVAEIGSLESVVCKCTRKARAWARLSNGGYSSTNAKAFQEKFWYSMLQFMTGPRRIASGILTIPKSDYGNPKIMRFLSPHA 205
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5KHD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD1_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 3.360e-15 Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 3
Query: 315 ITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQESAWYALHSFITGPRRVAHGLRTLDRGEFMNADIVRFIAPYAI 605
+TP + DI +E+ +HE + K RK+R W +L+ GGF + NARA QES WY L F+TGPRR + T+ +F +I+RF+APY +
Sbjct: 122 VTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANARAIQESLWYNLFQFMTGPRRCTAAILTIPSSDFHKPEIMRFLAPYYV 218
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Match: A0A6H5KBL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL7_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 8.500e-8 Identity = 40/99 (40.40%), Postives = 50/99 (50.51%), Query Frame = 3
Query: 183 AVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMFSGLLDIEHTKEDEVMSHEGVASKAGRKAREWARLTNGGFVTRNARAFQE 479
A+N L HRV +Y KAH TR +L L+G L DFLA+ + S E V K RKAR W RL+NGG+ + NA+AFQE
Sbjct: 82 AINTLLHRVMWRYTKAHMQSTREDLSEGQLVGEARLHEDFLAQ--------------------IGSLESVVCKCTRKARAWGRLSNGGYSSTNAKAFQE 160 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig640.41.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig640.41.3 >prot_P-littoralis_Contig640.41.3 ID=prot_P-littoralis_Contig640.41.3|Name=mRNA_P-littoralis_Contig640.41.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=264bp MAVNELSHRVFAQYYKAHAAKTRYNLELEGLLGRDGLLSDFLAEFITPVMback to top mRNA from alignment at P-littoralis_Contig640:147591..152047+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig640.41.3 ID=mRNA_P-littoralis_Contig640.41.3|Name=mRNA_P-littoralis_Contig640.41.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4457bp|location=Sequence derived from alignment at P-littoralis_Contig640:147591..152047+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig640:147591..152047+ >mRNA_P-littoralis_Contig640.41.3 ID=mRNA_P-littoralis_Contig640.41.3|Name=mRNA_P-littoralis_Contig640.41.3|organism=Pylaiella littoralis U1_48|type=CDS|length=792bp|location=Sequence derived from alignment at P-littoralis_Contig640:147591..152047+ (Pylaiella littoralis U1_48)back to top |