mRNA_P-littoralis_Contig1166.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1166.13.1
Unique NamemRNA_P-littoralis_Contig1166.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1166.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1166contigP-littoralis_Contig1166:26937..27458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.6569731-UTR-P-littoralis_Contig1166:26936..271611680789484.6569731-UTR-P-littoralis_Contig1166:26936..27161Pylaiella littoralis U1_48UTRP-littoralis_Contig1166 26937..27161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.669583-CDS-P-littoralis_Contig1166:27161..274581680789484.669583-CDS-P-littoralis_Contig1166:27161..27458Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 27162..27458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1166.13.1prot_P-littoralis_Contig1166.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1166 27162..27458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1166.13.1

>prot_P-littoralis_Contig1166.13.1 ID=prot_P-littoralis_Contig1166.13.1|Name=mRNA_P-littoralis_Contig1166.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MCCVTARRARPNPAWQQGVETKDRVSPWGLTKGVHKSNKVYPPRFANTGP
HETVNPRTEGVENIDATVCCDADCGYCGGKGCSARAQPLGATDCSTSE*
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mRNA from alignment at P-littoralis_Contig1166:26937..27458-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1166.13.1 ID=mRNA_P-littoralis_Contig1166.13.1|Name=mRNA_P-littoralis_Contig1166.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig1166:26937..27458- (Pylaiella littoralis U1_48)
ATGTGTTGTGTTACAGCCCGCAGAGCGAGACCAAACCCAGCATGGCAGCA
AGGAGTAGAGACGAAAGACAGAGTGAGCCCATGGGGGCTCACAAAGGGGG
TACACAAATCAAACAAAGTATACCCTCCCAGGTTTGCAAATACGGGGCCA
CATGAAACTGTCAACCCACGAACAGAGGGAGTGGAGAACATCGACGCGAC
TGTGTGTTGCGATGCTGACTGCGGATACTGCGGTGGTAAAGGCTGCTCCG
CTAGAGCCCAACCGCTTGGCGCTACCGACTGCTCCACCTCCGAGTAAGTG
ACTTGGCGGGGATCATTAATATGGTTCTTTATACCCTTCGTTCTGATCTC
GGTACCATAGTACTCACGGGGTAACGCAGCGTCCAGCAACTCTGAGCTAT
TTTGGTGTCTCGTTGAGACATTCAAGATCTTGTCGCAATCATCGTACATT
CTGCAATCAACATGCCCCCCTCTCTCCCCCCTCTTTCTCATTGGTAACGT
TTAGCATACTCGACCGTGGGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1166:26937..27458-

>mRNA_P-littoralis_Contig1166.13.1 ID=mRNA_P-littoralis_Contig1166.13.1|Name=mRNA_P-littoralis_Contig1166.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig1166:26937..27458- (Pylaiella littoralis U1_48)
ATGTGTTGTGTTACAGCCCGCAGAGCGAGACCAAACCCAGCATGGCAGCA
AGGAGTAGAGACGAAAGACAGAGTGAGCCCATGGGGGCTCACAAAGGGGG
TACACAAATCAAACAAAGTATACCCTCCCAGGTTTGCAAATACGGGGCCA
CATGAAACTGTCAACCCACGAACAGAGGGAGTGGAGAACATCGACGCGAC
TGTGTGTTGCGATGCTGACTGCGGATACTGCGGTGGTAAAGGCTGCTCCG
CTAGAGCCCAACCGCTTGGCGCTACCGACTGCTCCACCTCCGAGTAA
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