mRNA_P-littoralis_Contig64.173.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 234 bits (598), Expect = 2.180e-76 Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 3
Query: 3 NIPPTPVVSFDTKSTNMSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTIK 413
NIPP V +T MSGKGKGGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT+K
Sbjct: 30 NIPPLSVYFITNSTTTMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 226 bits (577), Expect = 5.700e-74 Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 3
Query: 51 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTIKK 416
MSGKGKGGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT+KK
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 213 bits (543), Expect = 6.810e-68 Identity = 109/120 (90.83%), Postives = 117/120 (97.50%), Query Frame = 3
Query: 48 NMSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 407
NMSGKGKGGRGKKS ++S+KAGLQFPV R+GR+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 51 NMSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 211 bits (537), Expect = 1.080e-67 Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 3
Query: 51 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 407
MSGKGKGGRGKKS ++S+KAGLQFPV R+GR+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 207 bits (528), Expect = 1.500e-66 Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 3
Query: 51 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 404
MSGKGKGGRGKK +RSAKAGLQFPVGR+GRF+K GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE) HSP 1 Score: 223 bits (567), Expect = 3.980e-64 Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 3
Query: 51 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTI 410
MSGKGKGGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT+
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 201 bits (511), Expect = 9.460e-64 Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 3
Query: 57 GKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTIKK*SS 425
GKGK GKK+V+RSAKAGLQFPVGRV R+LK GKYA+R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK+ KK +S
Sbjct: 5 GKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKKGAS 127
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.830e-63 Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = 3
Query: 51 MSGKGKGGRG-KKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTIK 413
MSGKGKGGRG KKS T SAKAGLQFPVGR+GR+L+ GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: A0A7S3CML3_9SPIT (Histone H2A (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CML3_9SPIT) HSP 1 Score: 201 bits (510), Expect = 1.860e-63 Identity = 107/124 (86.29%), Postives = 116/124 (93.55%), Query Frame = 3
Query: 48 NMSGKGKG-GRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTIKK 416
NMSGKGKG GKK+V+RSAKAGLQFPVGRV R+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG VTIA+GGVLPNIH+VLLPKK+ +K
Sbjct: 18 NMSGKGKGRAPGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGNVTIAAGGVLPNIHSVLLPKKSAEK 141
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 200 bits (508), Expect = 2.300e-63 Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = 3
Query: 51 MSGKGKGGRG---KKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 407
M+GKGKGGRG KKS ++S+KAGLQFPV R+GRFLK G+YA RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKKT
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKT 122 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig64.173.1 >prot_P-littoralis_Contig64.173.1 ID=prot_P-littoralis_Contig64.173.1|Name=mRNA_P-littoralis_Contig64.173.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLback to top mRNA from alignment at P-littoralis_Contig64:692442..692967+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig64.173.1 ID=mRNA_P-littoralis_Contig64.173.1|Name=mRNA_P-littoralis_Contig64.173.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=526bp|location=Sequence derived from alignment at P-littoralis_Contig64:692442..692967+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig64:692442..692967+ >mRNA_P-littoralis_Contig64.173.1 ID=mRNA_P-littoralis_Contig64.173.1|Name=mRNA_P-littoralis_Contig64.173.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig64:692442..692967+ (Pylaiella littoralis U1_48)back to top |