mRNA_P-littoralis_Contig1166.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1166.6.1
Unique NamemRNA_P-littoralis_Contig1166.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1166.6.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.190e-19
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:  151 LPLVTNDLSAMLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYLDHTVPGFFAWWNKSCKLPIPTWLTPKLMGQS 432
            L L  N+ S  LL  + + +K+  +HL+++QNAA YYQCLVTKR+ GT +T+ RDAHA+ NY + TVP F  WW        P+WLT  LMG +
Sbjct:    6 LLLPRNEHSDDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQQRDAHARTNYKNFTVPSFLCWWKTVVIQTPPSWLTQDLMGMT 98
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BLAST of mRNA_P-littoralis_Contig1166.6.1 vs. uniprot
Match: A0A6H5KNK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.530e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  151 LPLVTNDLSAMLLTTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTE 306
            L L  N+ S  LL  + + +K+  +HL+++QNAA YYQCLVTKR+ GT +T+
Sbjct:    6 LLLPRNEHSHDLLEYLSH-TKQTPKHLSLIQNAAAYYQCLVTKREAGTMSTQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1166.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE3.190e-1947.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK2_9PHAE1.530e-548.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1166contigP-littoralis_Contig1166:6850..7281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size434
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.6162672-CDS-P-littoralis_Contig1166:6849..72421680789484.6162672-CDS-P-littoralis_Contig1166:6849..7242Pylaiella littoralis U1_48CDSP-littoralis_Contig1166 6850..7242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.6281495-UTR-P-littoralis_Contig1166:7242..72811680789484.6281495-UTR-P-littoralis_Contig1166:7242..7281Pylaiella littoralis U1_48UTRP-littoralis_Contig1166 7243..7281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1166.6.1prot_P-littoralis_Contig1166.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1166 6850..7242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1166.6.1

>prot_P-littoralis_Contig1166.6.1 ID=prot_P-littoralis_Contig1166.6.1|Name=mRNA_P-littoralis_Contig1166.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MHGASPTASSPVAFAAVYAHAGNTRTPSLSSMEEIFPLPLVTNDLSAMLL
TTIGNCSKENSRHLAMVQNAAVYYQCLVTKRKIGTTNTEGRDAHAKQNYL
DHTVPGFFAWWNKSCKLPIPTWLTPKLMGQS
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mRNA from alignment at P-littoralis_Contig1166:6850..7281-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1166.6.1 ID=mRNA_P-littoralis_Contig1166.6.1|Name=mRNA_P-littoralis_Contig1166.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig1166:6850..7281- (Pylaiella littoralis U1_48)
TTTTAGGTAGCCGATAGGGGGTGCGAAGTAGTGCCGAATATGCACGGAGC
CTCTCCAACTGCATCCAGCCCAGTCGCCTTCGCTGCTGTGTATGCACACG
CCGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGAGGAAATTTTTCCT
CTACCCCTGGTCACTAATGACCTCTCGGCTATGCTGCTCACAACCATCGG
GAATTGTTCCAAGGAGAACTCGAGGCATCTAGCGATGGTTCAAAACGCGG
CTGTGTACTATCAGTGCCTCGTCACGAAGCGCAAGATCGGCACCACCAAC
ACCGAAGGACGGGATGCGCACGCAAAGCAGAACTACCTCGACCACACCGT
TCCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAAGCTGCCGATTCCTA
CGTGGCTGACGCCGAAGCTCATGGGCCAGAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1166:6850..7281-

>mRNA_P-littoralis_Contig1166.6.1 ID=mRNA_P-littoralis_Contig1166.6.1|Name=mRNA_P-littoralis_Contig1166.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1166:6850..7281- (Pylaiella littoralis U1_48)
ATGCACGGAGCCTCTCCAACTGCATCCAGCCCAGTCGCCTTCGCTGCTGT
GTATGCACACGCCGGCAACACGCGCACGCCCTCTCTCAGCAGCATGGAGG
AAATTTTTCCTCTACCCCTGGTCACTAATGACCTCTCGGCTATGCTGCTC
ACAACCATCGGGAATTGTTCCAAGGAGAACTCGAGGCATCTAGCGATGGT
TCAAAACGCGGCTGTGTACTATCAGTGCCTCGTCACGAAGCGCAAGATCG
GCACCACCAACACCGAAGGACGGGATGCGCACGCAAAGCAGAACTACCTC
GACCACACCGTTCCTGGTTTCTTTGCCTGGTGGAATAAGTCCTGCAAGCT
GCCGATTCCTACGTGGCTGACGCCGAAGCTCATGGGCCAGAGC
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