mRNA_P-littoralis_Contig64.151.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.151.1
Unique NamemRNA_P-littoralis_Contig64.151.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig64.151.1 vs. uniprot
Match: Q8QNJ7_ESV1K (EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ7_ESV1K)

HSP 1 Score: 444 bits (1142), Expect = 1.150e-155
Identity = 219/243 (90.12%), Postives = 231/243 (95.06%), Query Frame = 1
Query:    1 MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDFSDVKDT 729
            MA KTNMNL+YKTFPDVDFSAI+FDGIR GKNGMKFASLVG +GRRLVAE+PAM IPW TEIRKSEETGQCSSKIALSFQGMSDD ADDGKLRRFFNFLNGVD+RVK+LAV+NKSELWQK MDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSS+DVNEAMDMKIVVFRKDKTPVS  ELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPK  E EFQFTDMD+F+D+KD+
Sbjct:    1 MASKTNMNLTYKTFPDVDFSAIKFDGIRAGKNGMKFASLVGGNGRRLVAETPAMRIPWNTEIRKSEETGQCSSKIALSFQGMSDDQADDGKLRRFFNFLNGVDERVKELAVQNKSELWQKAMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDVNEAMDMKIVVFRKDKTPVSPKELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKPSETEFQFTDMDEFADIKDS 243          
BLAST of mRNA_P-littoralis_Contig64.151.1 vs. uniprot
Match: D8LPA8_ECTSI (EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA8_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 7.200e-151
Identity = 213/246 (86.59%), Postives = 226/246 (91.87%), Query Frame = 1
Query:    1 MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDFSDVKDTNNE 738
            MA K NMNL+YKTFPDVDFSAI+FDGIR GKNGMKFA+LVG +GRRLVAE+PAM IPW TEIRKSEETGQCSSKIALSFQGMSDD  DDGKLRRFFNFLNGVDKRVK+LA +NK+ELWQK MD GKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSS+D NEAMDMKIVVFRKDKTPVS  ELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPK  E  FQFTDM+DF+DVKD  ++
Sbjct:    1 MASKMNMNLTYKTFPDVDFSAIKFDGIRAGKNGMKFANLVGGNGRRLVAETPAMKIPWNTEIRKSEETGQCSSKIALSFQGMSDDQEDDGKLRRFFNFLNGVDKRVKELAAQNKTELWQKTMDAGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDANEAMDMKIVVFRKDKTPVSPRELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKPSETAFQFTDMEDFADVKDDGSD 246          
BLAST of mRNA_P-littoralis_Contig64.151.1 vs. uniprot
Match: A0A6H5K3E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E9_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 9.860e-53
Identity = 96/231 (41.56%), Postives = 136/231 (58.87%), Query Frame = 1
Query:   25 LSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCS--SKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDF 711
            +S+K+F   DF  +R DG   G +G++F  L  A G R+  E+PAM I W  E R        S  +++ALSF GM  +     +++ F +FL  +D RV  L  E K  LW K M + KI++ +  SVK  ++ KY  TF  KIPL++  +P+SD   +   MKI VF   K  +S +E K GCLAS I EASY+WC P M+G++W V+ VLV+P+  E  FQFTD++ F
Sbjct:    5 VSHKSFASFDFEGVRIDGATAGMSGVRFGYLQDARGDRIKIETPAMRIAWNAEPRTPHNQPDASIGARLALSFGGMESEGGQ--RVKAFHDFLFKMDDRVLALVKEKKGALWAKAMPDAKIDSVYVPSVKEPSDPKYDQTFAAKIPLEDNPSPASDSPRDLKTMKISVFNTAKKAISPTECKAGCLASAIVEASYIWCAPGMVGVTWTVRSVLVKPRKPERTFQFTDVEGF 233          
BLAST of mRNA_P-littoralis_Contig64.151.1 vs. uniprot
Match: B5LWA7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA7_9PHYC)

HSP 1 Score: 137 bits (344), Expect = 1.280e-35
Identity = 81/235 (34.47%), Postives = 137/235 (58.30%), Query Frame = 1
Query:   34 KTFPDVDFSAIRFDGIRPGK--NGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSD-DPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKI--PLQEGKNPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDFSDVK 723
            K++ D D S ++    +  K  +G K A +       +  ++P MT+PW    +K ++T    +++ALSF  +++ DP  D ++ +F NFL   D ++K L  E K  L  KN ++ +++A F+SS+K ST+ +YPPTFQ KI   L++G  PS  D     +M ++VF  +   +S +E++ GC A+ I   SYVWC+ + +GI+W+ K V ++PK  E+ F FT   +F +V+
Sbjct:    3 KSYADFDISTLKLSQAKTSKANSGCKTAYISAIGCANIAIQTPLMTLPWDIVPKKLDDTSNVRAELALSFMNINEYDP--DNEILKFRNFLTDFDIKIKTLVAEMKGVLG-KNSEDARLDASFRSSIKDSTSGEYPPTFQSKIWLSLKQGGAPSCVD---DFEMDVMVFDMNGAQLSPTEMRKGCPAAAIIVPSYVWCSALGLGITWVAKQVAIQPKG-ESTFGFTLGSEFDEVR 230          
BLAST of mRNA_P-littoralis_Contig64.151.1 vs. uniprot
Match: Q6XLU5_9PHYC (FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU5_9PHYC)

HSP 1 Score: 130 bits (327), Expect = 3.990e-33
Identity = 76/219 (34.70%), Postives = 123/219 (56.16%), Query Frame = 1
Query:   28 SYKTFPDVDFSAIRFDGIRPGK--NGMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKI--PLQEGKNPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKS 672
            S K F D D S ++    +  K  +G K A L      ++  ++P MT+PW    +K ++      +++LSF GM +  AD+ +L +F  F+   D+RVK L  E    +  KN +E ++   F+ ++K S    YPPT Q KI   L++G +PSS    E  DM ++VF  D + ++T +++ GC A+ I E SYVWC+ + +GI+W+ K V V+P+S
Sbjct:    3 SPKCFYDFDISTVKLSPPKTSKANSGCKTAYLTTTGSMKIAIQTPVMTLPWDIVPKKMDDVSNVRGELSLSFVGMDERDADN-ELCQFKTFVEHFDERVKALISETNGAMG-KNSEETRLGTNFRPTIKESATGNYPPTIQSKIWLNLKQGGSPSSV---EDFDMDVMVFDMDGSRINTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVAVQPQS 216          
BLAST of mRNA_P-littoralis_Contig64.151.1 vs. uniprot
Match: Q6XM26_9PHYC (FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM26_9PHYC)

HSP 1 Score: 127 bits (319), Expect = 8.630e-32
Identity = 69/215 (32.09%), Postives = 125/215 (58.14%), Query Frame = 1
Query:   40 FPDVDFSAIRFDGIRPGKN--GMKFASLVGASGRRLVAESPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLNGVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGKI--PLQEGKNPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKS 672
            F + D S ++    +  K   G K A +      ++  ++P MT+PW    +K ++     ++++LSF G+++D  ++ +L++F +FL+  D+++K L  E    +  KN ++ ++EA F+ S+K S    YPPT Q KI   L++G +PS   + E  DM ++VF  +   + T +++ GC A+ I E SYVWC+ + +GI+W+ K V ++PKS
Sbjct:   18 FSEFDVSTLKLSPPKTSKANVGCKTAYITAVGSVKIAIQTPIMTLPWDIVPKKLDDVSNVRAELSLSFVGINEDDPEN-ELKKFKDFLSTFDQKIKTLISETHGAMG-KNSEDTRLEASFRDSIKESATGNYPPTIQSKIWLNLKQGGSPS---IVEDFDMDVMVFDLEGCQIQTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVALQPKS 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Q8QNJ7_ESV1K1.150e-15590.12EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA8_ECTSI7.200e-15186.59EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5K3E9_9PHAE9.860e-5341.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWA7_9PHYC1.280e-3534.47Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLU5_9PHYC3.990e-3334.70FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XM26_9PHYC8.630e-3232.09FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:572033..572875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1474867.A0A076FHQ6_9PHYC
Model size843
Max annot lvl10239|Viruses
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.96e-05
EggNOG OGs4QDTX@10239|Viruses,4QWY6@35237|dsDNA viruses no RNA stage
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.6608853-CDS-P-littoralis_Contig64:572032..5728751680791336.6608853-CDS-P-littoralis_Contig64:572032..572875Pylaiella littoralis U1_48CDSP-littoralis_Contig64 572033..572875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.151.1prot_P-littoralis_Contig64.151.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 572033..572875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.151.1

>prot_P-littoralis_Contig64.151.1 ID=prot_P-littoralis_Contig64.151.1|Name=mRNA_P-littoralis_Contig64.151.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=281bp
MAGKTNMNLSYKTFPDVDFSAIRFDGIRPGKNGMKFASLVGASGRRLVAE
SPAMTIPWKTEIRKSEETGQCSSKIALSFQGMSDDPADDGKLRRFFNFLN
GVDKRVKQLAVENKSELWQKNMDEGKIEAYFQSSVKASTNDKYPPTFQGK
IPLQEGKNPSSDDVNEAMDMKIVVFRKDKTPVSTSELKGGCLASVIAEAS
YVWCTPMMIGISWIVKFVLVEPKSKEAEFQFTDMDDFSDVKDTNNEDSDS
SGNKRKRGSSGGSSVGDEDDDDDDEEEEFN*
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mRNA from alignment at P-littoralis_Contig64:572033..572875-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.151.1 ID=mRNA_P-littoralis_Contig64.151.1|Name=mRNA_P-littoralis_Contig64.151.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=843bp|location=Sequence derived from alignment at P-littoralis_Contig64:572033..572875- (Pylaiella littoralis U1_48)
ATGGCCGGCAAGACGAACATGAACCTTAGCTACAAGACTTTCCCTGACGT GGACTTCTCGGCCATTAGGTTCGACGGCATTCGTCCGGGTAAAAACGGGA TGAAGTTTGCGAGTCTCGTCGGCGCCAGTGGGAGACGACTTGTTGCTGAG TCGCCGGCGATGACGATCCCGTGGAAAACAGAAATCAGGAAGAGTGAGGA GACTGGACAGTGTTCTTCAAAGATTGCACTGTCCTTCCAGGGAATGAGTG ATGACCCAGCAGATGACGGCAAACTTCGCCGATTCTTTAACTTCCTGAAC GGCGTCGACAAGAGGGTGAAACAGCTTGCGGTCGAGAACAAGAGCGAGCT CTGGCAGAAGAACATGGACGAGGGCAAGATCGAAGCCTACTTCCAGAGCT CTGTGAAGGCGTCGACTAACGACAAATACCCTCCTACTTTCCAGGGCAAG ATTCCTTTGCAGGAAGGGAAAAACCCTTCTTCTGATGATGTCAACGAAGC AATGGACATGAAAATTGTTGTTTTCCGGAAAGACAAAACTCCCGTTTCCA CTTCCGAGCTCAAAGGGGGTTGTCTGGCTAGCGTTATCGCAGAGGCTTCC TATGTTTGGTGTACTCCTATGATGATTGGTATTTCTTGGATTGTGAAGTT TGTTTTGGTTGAACCAAAGTCGAAGGAAGCCGAGTTCCAGTTCACCGACA TGGATGATTTCTCGGACGTGAAAGACACCAACAACGAAGACTCCGATTCA TCCGGCAACAAGCGCAAAAGGGGATCTTCTGGGGGATCTTCTGTCGGGGA TGAAGACGATGACGACGATGATGAAGAAGAAGAATTTAACTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:572033..572875-

>mRNA_P-littoralis_Contig64.151.1 ID=mRNA_P-littoralis_Contig64.151.1|Name=mRNA_P-littoralis_Contig64.151.1|organism=Pylaiella littoralis U1_48|type=CDS|length=843bp|location=Sequence derived from alignment at P-littoralis_Contig64:572033..572875- (Pylaiella littoralis U1_48)
ATGGCCGGCAAGACGAACATGAACCTTAGCTACAAGACTTTCCCTGACGT
GGACTTCTCGGCCATTAGGTTCGACGGCATTCGTCCGGGTAAAAACGGGA
TGAAGTTTGCGAGTCTCGTCGGCGCCAGTGGGAGACGACTTGTTGCTGAG
TCGCCGGCGATGACGATCCCGTGGAAAACAGAAATCAGGAAGAGTGAGGA
GACTGGACAGTGTTCTTCAAAGATTGCACTGTCCTTCCAGGGAATGAGTG
ATGACCCAGCAGATGACGGCAAACTTCGCCGATTCTTTAACTTCCTGAAC
GGCGTCGACAAGAGGGTGAAACAGCTTGCGGTCGAGAACAAGAGCGAGCT
CTGGCAGAAGAACATGGACGAGGGCAAGATCGAAGCCTACTTCCAGAGCT
CTGTGAAGGCGTCGACTAACGACAAATACCCTCCTACTTTCCAGGGCAAG
ATTCCTTTGCAGGAAGGGAAAAACCCTTCTTCTGATGATGTCAACGAAGC
AATGGACATGAAAATTGTTGTTTTCCGGAAAGACAAAACTCCCGTTTCCA
CTTCCGAGCTCAAAGGGGGTTGTCTGGCTAGCGTTATCGCAGAGGCTTCC
TATGTTTGGTGTACTCCTATGATGATTGGTATTTCTTGGATTGTGAAGTT
TGTTTTGGTTGAACCAAAGTCGAAGGAAGCCGAGTTCCAGTTCACCGACA
TGGATGATTTCTCGGACGTGAAAGACACCAACAACGAAGACTCCGATTCA
TCCGGCAACAAGCGCAAAAGGGGATCTTCTGGGGGATCTTCTGTCGGGGA
TGAAGACGATGACGACGATGATGAAGAAGAAGAATTTAACTAG
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