mRNA_P-littoralis_Contig64.144.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.144.1
Unique NamemRNA_P-littoralis_Contig64.144.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.144.1 vs. uniprot
Match: Q8QNJ6_ESV1K (EsV-1-77 n=2 Tax=root TaxID=1 RepID=Q8QNJ6_ESV1K)

HSP 1 Score: 429 bits (1102), Expect = 5.670e-148
Identity = 204/245 (83.27%), Postives = 224/245 (91.43%), Query Frame = 1 
Query:    1 MNDRQVLDEIVGVGTTIPVSGPWRLTVWDSPSTGKLYVFSEEHGNKGSCPQNRHFSTLASEILQKTRGVHVLVENFIHANDITTPKTGRNTTLAQACSPVNVGILNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLPDRKNLTGRLIGVFEAFRTKMTPVQRATFDKIWVRDITGGIGAVNSKYIKLHDTYSSSKKK 735
            M+DRQVLD+IVGVG+  PVSGPWRLTVWD+ +TGKLYVFSEEH NKGSCPQNRHFS+LASEILQKT GVHVLVENFIHA DITTPKTG  T++AQACS VNVGILNNLR+CLEVMKINSQHCP GCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKAS G FDDAVLT+FES+VHPLSSLLPDR NL GRL+GVFE FR KMTPVQR TFD+IWVRDITGGI  +N+KY+KLH+ Y +S++K
Sbjct:    1 MSDRQVLDDIVGVGSGSPVSGPWRLTVWDAATTGKLYVFSEEHANKGSCPQNRHFSSLASEILQKTSGVHVLVENFIHAYDITTPKTGIKTSVAQACSAVNVGILNNLRSCLEVMKINSQHCPGGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASHGSFDDAVLTVFESLVHPLSSLLPDRANLAGRLVGVFETFRNKMTPVQRVTFDRIWVRDITGGIADINAKYVKLHENYCASRRK 245
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BLAST of mRNA_P-littoralis_Contig64.144.1 vs. uniprot
Match: B5LWA8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA8_9PHYC)

HSP 1 Score: 156 bits (395), Expect = 8.380e-42
Identity = 96/236 (40.68%), Postives = 133/236 (56.36%), Query Frame = 1 
Query:    1 MNDRQVLDEIVGVGTTIPVSGPWRLTVWDSPSTGKL-YVFSEEHGNKGSCPQN--RHFSTLASEILQKTRGVHVLVENFIHANDITTPKTGRNTTLAQAC-SPVNVGILNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLPDRKNLTGRLIGVFEAFRTKMTPVQRATFDKIWVRDITGGIGAVNSKY 696
            MND Q L +    GT+  VSGPWRL+VW     G + YVF+EEHGN G C +   +  + L  +I+QKT  VHV +E+FIH        T  +  ++ AC +      L +LRNCL+  +  +     G A RIHFIDPR+D+V++LPDG +++A+S Y  H    G F  A  T++E+ VHPL SL+PDR  L GR+  V E   + +TP QR  F   W   + G +  V   Y
Sbjct:    1 MNDAQHL-QYRFTGTS--VSGPWRLSVWRHRDEGTVVYVFAEEHGNAGPCHRTTGQDLTPLVFDIIQKTSRVHVFLEHFIH--------TRESMGVSDACFASARQDTLKHLRNCLQFARNKTP----GYADRIHFIDPRMDLVAILPDGNVYKAVSHYITHLDEVGDFPAARRTVYEAFVHPLLSLVPDRVGLEGRMERVMERTISLLTPRQRKFFTLSWETGVVGNVARVVQIY 221
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BLAST of mRNA_P-littoralis_Contig64.144.1 vs. uniprot
Match: Q6XLU4_9PHYC (FirrV-1-I2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU4_9PHYC)

HSP 1 Score: 140 bits (353), Expect = 1.450e-35
Identity = 87/246 (35.37%), Postives = 131/246 (53.25%), Query Frame = 1 
Query:    1 MNDRQVLDEIVGVGTTIPVSGPWRLTVWDSPSTGK-LYVFSEEHGNKGSCP---QNRHFSTLASEILQKTRGVHVLVENFIHANDITTPKTGRNTTLAQACSPVNVGILNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLPDRKNLTGRLIGVFEAFRTKMTPVQRATFDKIWVRDITGGIGAVNSKYI-KLHDTYSS 723
            M+D + LD+    GT I  SGPWR++VW      + ++VFSEEH N+G+C    ++   + L S I++ T GVHV +E+F+HA D+T           + CS      L  LRNCL + +   Q        RIHFIDPR D+V++LPDG +++A+  YA H   Q    +  L ++E+ VHPL S++     L GRL  + + +   MTP Q       W  D+      +N  Y+ +++D  SS
Sbjct:    1 MHDARFLDDAFR-GTRI--SGPWRVSVWKKKDCNQNIWVFSEEHENRGACGLEVKHTDLTNLVSHIVKNTEGVHVFLEHFVHAVDVT-----------RTCSSDESSTLTRLRNCLGIDQQQQQQ--RDSENRIHFIDPRTDLVAILPDGTVYQAVLHYAKHLRRQHKQPELKLLLYETFVHPLLSIVNPDGTLQGRLNVIMQKYMENMTPSQHRFLCSKWHNDVI-----LNVLYVYRVYDELSS 225
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BLAST of mRNA_P-littoralis_Contig64.144.1 vs. uniprot
Match: Q6XM25_9PHYC (FirrV-1-B11 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM25_9PHYC)

HSP 1 Score: 137 bits (346), Expect = 1.100e-34
Identity = 84/220 (38.18%), Postives = 116/220 (52.73%), Query Frame = 1 
Query:   55 VSGPWRLTVWDSPSTGKLYVFSEEHGNKGSCP---QNRHFSTLASEILQKTRGVHVLVENFIHANDITTPKTGRNTTLAQACSPVNVGILNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFEAISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLP---DRKNLTGRLIGVFEAFRTKMTPVQRATFDKIWVRDITGGIGAVNSKY 696
            VSGPWR T+W +      +VFSEEH NKG+C    Q    ++L +EI++ T+ VHV +E+F+HA D+    T  N+TL             NLR CL          P G   RIH+IDPR D+V++LP+G++ EAI  YAHH  SQ    +  L ++E+ +HPL S++    D   L GRL  V + +   MT  Q   F   W  D+   I  V   Y
Sbjct:   16 VSGPWRATMWRTRDGHVTWVFSEEHENKGACGLEVQQTDLTSLVAEIIRDTKNVHVFLEHFVHAADVQRTCTTSNSTLQ------------NLRGCL----------PKG--PRIHYIDPRTDLVAILPNGQILEAIVHYAHHLHSQHKDLELKLLLYETFIHPLLSIVSPSGDSAVLEGRLNTVLQKYVANMTTAQMGFFRDKWSVDVIANIENVRRIY 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNJ6_ESV1K5.670e-14883.27EsV-1-77 n=2 Tax=root TaxID=1 RepID=Q8QNJ6_ESV1K[more]
B5LWA8_9PHYC8.380e-4240.68Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLU4_9PHYC1.450e-3535.37FirrV-1-I2 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XM25_9PHYC1.100e-3438.18FirrV-1-B11 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:560872..561879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1008
Hectar predicted targeting categoryother localisation
Exons1
Cds size1008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.4401808-CDS-P-littoralis_Contig64:560871..5618791680791336.4401808-CDS-P-littoralis_Contig64:560871..561879Pylaiella littoralis U1_48CDSP-littoralis_Contig64 560872..561879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.144.1prot_P-littoralis_Contig64.144.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 560872..561879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.144.1

>prot_P-littoralis_Contig64.144.1 ID=prot_P-littoralis_Contig64.144.1|Name=mRNA_P-littoralis_Contig64.144.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=336bp
MNDRQVLDEIVGVGTTIPVSGPWRLTVWDSPSTGKLYVFSEEHGNKGSCP
QNRHFSTLASEILQKTRGVHVLVENFIHANDITTPKTGRNTTLAQACSPV
NVGILNNLRNCLEVMKINSQHCPDGCAKRIHFIDPRVDMVSVLPDGKLFE
AISFYAHHKASQGYFDDAVLTIFESIVHPLSSLLPDRKNLTGRLIGVFEA
FRTKMTPVQRATFDKIWVRDITGGIGAVNSKYIKLHDTYSSSKKKYPVAQ
QVLSRRGRNQTNIQTLHQQVYGRVAPRSHLHDTEHNGVQWNGDVLGVASW
PRDRKIPQPSWSSQNTPLGEPKPGFLPCPEINITS*
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mRNA from alignment at P-littoralis_Contig64:560872..561879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.144.1 ID=mRNA_P-littoralis_Contig64.144.1|Name=mRNA_P-littoralis_Contig64.144.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1008bp|location=Sequence derived from alignment at P-littoralis_Contig64:560872..561879+ (Pylaiella littoralis U1_48)
ATGAACGATCGACAGGTCTTAGACGAGATTGTCGGTGTGGGGACAACAAT
CCCAGTGTCTGGCCCATGGAGGTTAACTGTTTGGGATTCACCAAGCACCG
GGAAGCTCTATGTTTTTAGCGAAGAACATGGCAACAAAGGTTCTTGCCCT
CAAAACCGACATTTTTCTACCCTTGCGTCGGAAATACTGCAGAAAACAAG
AGGAGTACATGTGCTGGTAGAGAACTTCATTCATGCCAACGACATAACGA
CCCCTAAGACGGGGAGAAATACAACTCTTGCCCAAGCGTGCTCCCCCGTC
AATGTTGGAATTCTCAACAATCTTCGAAATTGTCTCGAGGTGATGAAGAT
CAACTCTCAGCACTGTCCTGACGGGTGCGCGAAGCGTATCCATTTCATTG
ATCCTCGTGTGGATATGGTGTCTGTTCTTCCGGACGGAAAGTTGTTCGAG
GCCATTTCATTTTACGCCCACCACAAGGCATCACAGGGGTATTTCGATGA
TGCGGTGTTAACGATCTTTGAGTCGATCGTCCACCCTCTCTCAAGTCTCT
TGCCAGATAGAAAAAACCTCACCGGACGGCTGATAGGCGTCTTCGAGGCG
TTCAGGACAAAAATGACTCCGGTGCAGAGGGCGACTTTTGATAAAATATG
GGTTCGTGATATCACCGGTGGAATTGGTGCAGTAAATTCCAAGTATATTA
AACTTCACGACACTTATTCTTCGTCAAAGAAAAAATACCCTGTCGCTCAA
CAAGTTCTCTCAAGACGTGGAAGAAATCAAACAAATATACAAACGCTACA
CCAACAAGTTTATGGACGTGTGGCTCCTCGCTCACATCTTCATGATACAG
AACACAACGGGGTCCAATGGAATGGTGATGTACTTGGGGTCGCTTCATGG
CCTCGAGATAGAAAAATACCTCAGCCTTCATGGTCTTCGCAAAATACACC
ACTCGGAGAGCCAAAACCTGGATTCCTGCCTTGTCCTGAAATAAATATAA
CTAGTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:560872..561879+

>mRNA_P-littoralis_Contig64.144.1 ID=mRNA_P-littoralis_Contig64.144.1|Name=mRNA_P-littoralis_Contig64.144.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1008bp|location=Sequence derived from alignment at P-littoralis_Contig64:560872..561879+ (Pylaiella littoralis U1_48)
ATGAACGATCGACAGGTCTTAGACGAGATTGTCGGTGTGGGGACAACAAT
CCCAGTGTCTGGCCCATGGAGGTTAACTGTTTGGGATTCACCAAGCACCG
GGAAGCTCTATGTTTTTAGCGAAGAACATGGCAACAAAGGTTCTTGCCCT
CAAAACCGACATTTTTCTACCCTTGCGTCGGAAATACTGCAGAAAACAAG
AGGAGTACATGTGCTGGTAGAGAACTTCATTCATGCCAACGACATAACGA
CCCCTAAGACGGGGAGAAATACAACTCTTGCCCAAGCGTGCTCCCCCGTC
AATGTTGGAATTCTCAACAATCTTCGAAATTGTCTCGAGGTGATGAAGAT
CAACTCTCAGCACTGTCCTGACGGGTGCGCGAAGCGTATCCATTTCATTG
ATCCTCGTGTGGATATGGTGTCTGTTCTTCCGGACGGAAAGTTGTTCGAG
GCCATTTCATTTTACGCCCACCACAAGGCATCACAGGGGTATTTCGATGA
TGCGGTGTTAACGATCTTTGAGTCGATCGTCCACCCTCTCTCAAGTCTCT
TGCCAGATAGAAAAAACCTCACCGGACGGCTGATAGGCGTCTTCGAGGCG
TTCAGGACAAAAATGACTCCGGTGCAGAGGGCGACTTTTGATAAAATATG
GGTTCGTGATATCACCGGTGGAATTGGTGCAGTAAATTCCAAGTATATTA
AACTTCACGACACTTATTCTTCGTCAAAGAAAAAATACCCTGTCGCTCAA
CAAGTTCTCTCAAGACGTGGAAGAAATCAAACAAATATACAAACGCTACA
CCAACAAGTTTATGGACGTGTGGCTCCTCGCTCACATCTTCATGATACAG
AACACAACGGGGTCCAATGGAATGGTGATGTACTTGGGGTCGCTTCATGG
CCTCGAGATAGAAAAATACCTCAGCCTTCATGGTCTTCGCAAAATACACC
ACTCGGAGAGCCAAAACCTGGATTCCTGCCTTGTCCTGAAATAAATATAA
CTAGTTAA
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