mRNA_P-littoralis_Contig64.142.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.142.1
Unique NamemRNA_P-littoralis_Contig64.142.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.142.1 vs. uniprot
Match: Q8QNJ5_ESV1K (EsV-1-78 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ5_ESV1K)

HSP 1 Score: 350 bits (898), Expect = 1.680e-118
Identity = 176/282 (62.41%), Postives = 219/282 (77.66%), Query Frame = 1 
Query:    1 MFLVYAPILFVSIYFCSKCVQQCLPSSTQLLISRVVSEVVIMVAYTVARTTRYMAALRSRYIWEKRARFCSRIFVHIFDTLLRVDVDQAHLDTSSGHASVEILTAISTLCGKDYDITDVFNYMWSCGNGIRIDVFIKDALNSLGCENDS--DKDVTTRIRYRGHSNISKWYPSETFSARYTCKVTQAFRFPPYASSESVRRGLSVPRIVRCNFVEDNGKLMYGPETRESSGLRRNFYDDIDDDPSLEKNVITFFDTPHRFQEKKKLVVTTSKSNTKIFCNVK 840
            MFLVY P++ VS+YFC+KC  + LP+  +  +SRVVS+VVI  A+  AR  RY  A RS YIW+KR R  + + V +FD LL+VD DQ  + TSSGHAS+EIL A++T+  KD DIT+V + MW+ G+G+R++V IK AL  + CENDS  D DVT RIRYRGHSN SK YP+ETFSARYTCK +Q FRFPPYASSES+RRGL  PRI+RCNFVE+NGK++ GPE  ESSGLRRN+Y D++DDP L KNV+TFF    RFQE+++LVVTTSKSN KIFCN+K
Sbjct:    4 MFLVYLPVISVSLYFCAKCAHRFLPTPARRAVSRVVSKVVIAAAFASARVCRYTIATRSAYIWDKRGRMGNGVLVGVFDALLQVDADQTRVHTSSGHASIEILEAVATVHQKDCDITNVLDRMWADGDGLRMNVPIKVALGGVRCENDSAEDMDVTVRIRYRGHSNQSKRYPAETFSARYTCKGSQTFRFPPYASSESIRRGLGTPRILRCNFVEENGKMLLGPEATESSGLRRNYYADVEDDPCLLKNVVTFFKPSTRFQEQEQLVVTTSKSNLKIFCNLK 285
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BLAST of mRNA_P-littoralis_Contig64.142.1 vs. uniprot
Match: D8LPB0_ECTSI (EsV-1-78 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPB0_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 3.380e-113
Identity = 172/284 (60.56%), Postives = 213/284 (75.00%), Query Frame = 1 
Query:    1 MFLVYAPILFVSIYFCSKCVQQCLPSSTQLLISRVVSEVVIMVAYTVARTTRYMAALRSRYIWEKRARFCSRIFVHIFDTLLRVDVDQAHLDTSSGHASVEILTAISTLCGKDYDITDVFNYMWSCGNGIRIDVFIKDALNSLGCENDSDK----DVTTRIRYRGHSNISKWYPSETFSARYTCKVTQAFRFPPYASSESVRRGLSVPRIVRCNFVEDNGKLMYGPETRESSGLRRNFYDDIDDDPSLEKNVITFFDTPHRFQEKKKLVVTTSKSNTKIFCNVK 840
            MFLVY P++FVS+YFC+K   +CLP+     +SRVVSEVVI  A+T AR  RY  A RS YIW+ R R  + + V + DTLLRVD DQ  +DTSSGHAS+EIL A++T+   D DIT+V   MW+ G+G+R++V I+ AL+ +   NDSD     +VT RIRYRGHSN SK YP+ETFSARYTCK +Q FRFPPYASSES+RRGL  PRI+RCNF EDNGKL+ G E  ES+GLRRNFY+++ DDP L +NV+TF +   RFQE++ LVVTTSKSN KIFCN K
Sbjct:    1 MFLVYVPVIFVSLYFCAKSAHRCLPTPALRAVSRVVSEVVIAAAFTAARICRYAMATRSAYIWDTRGRLGNGVIVGVLDTLLRVDADQTRVDTSSGHASIEILQAVATVRQGDCDITNVLGDMWADGDGLRMEVPIEVALDGVRRGNDSDSAEDVEVTVRIRYRGHSNESKRYPAETFSARYTCKGSQTFRFPPYASSESIRRGLGTPRILRCNFAEDNGKLLLGREATESAGLRRNFYENVQDDPCLLRNVVTFIEPSARFQEQQPLVVTTSKSNLKIFCNSK 284
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNJ5_ESV1K1.680e-11862.41EsV-1-78 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPB0_ECTSI3.380e-11360.56EsV-1-78 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:559944..560789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size846
Hectar predicted targeting categorysignal peptide
Exons1
Cds size846
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.4007504-CDS-P-littoralis_Contig64:559943..5607891680791336.4007504-CDS-P-littoralis_Contig64:559943..560789Pylaiella littoralis U1_48CDSP-littoralis_Contig64 559944..560789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.142.1prot_P-littoralis_Contig64.142.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 559944..560789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.142.1

>prot_P-littoralis_Contig64.142.1 ID=prot_P-littoralis_Contig64.142.1|Name=mRNA_P-littoralis_Contig64.142.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MFLVYAPILFVSIYFCSKCVQQCLPSSTQLLISRVVSEVVIMVAYTVART
TRYMAALRSRYIWEKRARFCSRIFVHIFDTLLRVDVDQAHLDTSSGHASV
EILTAISTLCGKDYDITDVFNYMWSCGNGIRIDVFIKDALNSLGCENDSD
KDVTTRIRYRGHSNISKWYPSETFSARYTCKVTQAFRFPPYASSESVRRG
LSVPRIVRCNFVEDNGKLMYGPETRESSGLRRNFYDDIDDDPSLEKNVIT
FFDTPHRFQEKKKLVVTTSKSNTKIFCNVKI*
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mRNA from alignment at P-littoralis_Contig64:559944..560789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.142.1 ID=mRNA_P-littoralis_Contig64.142.1|Name=mRNA_P-littoralis_Contig64.142.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig64:559944..560789- (Pylaiella littoralis U1_48)
ATGTTTCTCGTCTACGCACCGATTCTCTTCGTCTCCATATACTTCTGCTC
GAAATGTGTGCAACAATGTCTACCCTCTTCTACGCAACTCTTAATTTCTA
GAGTGGTTTCAGAAGTCGTAATCATGGTCGCCTACACGGTTGCCCGGACG
ACAAGGTACATGGCGGCGTTACGATCTCGATACATCTGGGAGAAAAGAGC
AAGATTTTGTAGCAGAATTTTCGTGCATATCTTCGACACATTGCTCAGGG
TCGATGTGGATCAGGCGCACTTGGACACGTCTTCCGGACACGCATCGGTA
GAGATATTGACGGCGATATCTACATTATGTGGAAAAGACTATGATATTAC
AGATGTCTTTAACTATATGTGGTCGTGTGGTAACGGAATACGAATCGACG
TCTTTATCAAAGACGCGCTCAATAGCCTTGGTTGTGAAAATGATTCAGAC
AAGGACGTGACCACACGCATAAGGTACCGCGGACACAGCAACATATCCAA
GTGGTATCCATCTGAAACTTTTTCGGCGAGGTACACATGCAAAGTAACGC
AGGCATTCCGGTTTCCACCTTACGCCTCTTCGGAAAGCGTTCGACGCGGA
TTGAGCGTGCCACGTATCGTACGCTGCAACTTCGTTGAAGACAATGGGAA
GCTGATGTATGGACCGGAAACAAGAGAGTCTTCCGGACTTCGACGAAACT
TTTACGACGACATAGACGACGACCCTAGTCTTGAGAAAAACGTCATTACA
TTCTTCGACACACCTCATCGTTTTCAGGAAAAAAAGAAACTTGTCGTTAC
CACGTCAAAATCTAATACGAAGATTTTCTGCAATGTAAAGATATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:559944..560789-

>mRNA_P-littoralis_Contig64.142.1 ID=mRNA_P-littoralis_Contig64.142.1|Name=mRNA_P-littoralis_Contig64.142.1|organism=Pylaiella littoralis U1_48|type=CDS|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig64:559944..560789- (Pylaiella littoralis U1_48)
ATGTTTCTCGTCTACGCACCGATTCTCTTCGTCTCCATATACTTCTGCTC
GAAATGTGTGCAACAATGTCTACCCTCTTCTACGCAACTCTTAATTTCTA
GAGTGGTTTCAGAAGTCGTAATCATGGTCGCCTACACGGTTGCCCGGACG
ACAAGGTACATGGCGGCGTTACGATCTCGATACATCTGGGAGAAAAGAGC
AAGATTTTGTAGCAGAATTTTCGTGCATATCTTCGACACATTGCTCAGGG
TCGATGTGGATCAGGCGCACTTGGACACGTCTTCCGGACACGCATCGGTA
GAGATATTGACGGCGATATCTACATTATGTGGAAAAGACTATGATATTAC
AGATGTCTTTAACTATATGTGGTCGTGTGGTAACGGAATACGAATCGACG
TCTTTATCAAAGACGCGCTCAATAGCCTTGGTTGTGAAAATGATTCAGAC
AAGGACGTGACCACACGCATAAGGTACCGCGGACACAGCAACATATCCAA
GTGGTATCCATCTGAAACTTTTTCGGCGAGGTACACATGCAAAGTAACGC
AGGCATTCCGGTTTCCACCTTACGCCTCTTCGGAAAGCGTTCGACGCGGA
TTGAGCGTGCCACGTATCGTACGCTGCAACTTCGTTGAAGACAATGGGAA
GCTGATGTATGGACCGGAAACAAGAGAGTCTTCCGGACTTCGACGAAACT
TTTACGACGACATAGACGACGACCCTAGTCTTGAGAAAAACGTCATTACA
TTCTTCGACACACCTCATCGTTTTCAGGAAAAAAAGAAACTTGTCGTTAC
CACGTCAAAATCTAATACGAAGATTTTCTGCAATGTAAAGATATAA
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