mRNA_P-littoralis_Contig64.139.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.139.1
Unique NamemRNA_P-littoralis_Contig64.139.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.139.1 vs. uniprot
Match: Q8QNJ2_ESV1K (EsV-1-81 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ2_ESV1K)

HSP 1 Score: 331 bits (848), Expect = 2.990e-113
Identity = 159/212 (75.00%), Postives = 179/212 (84.43%), Query Frame = 1 
Query:    1 MIKLSDDAVHEVRSMVLSNDSRVFRFLRIYMLQTKENNICEVLDSKEFLTKPVVFTAWETGRADILQNCVRKGVLINATLSVTSAIRSGCIATLDFCVEQGGSVDDLKRPYCHCTTTEMMQHIWTKYKKKLYDREAVFPRDLDISIKYMEMGGTVAQMGKELNESCQREGNWRRSLPIKRAYMENNGPYGCKLATELMSLPKSVINRVGEYI 636
            MIKL DDAV E+RSMVLSNDSRVF FLR+YM++   NNI EVLDSKE+LTKPVV+TAWETGR DIL+NCVR GV I+A  SV SAIRSG + TLD CVEQGGS++   RPYCHCTTTEMM+HIW KYKKKLYDREAVFPRDL  SIKYMEMGGTVAQMGK++N+ C REGNWRRSLPIKRAY E  GPY   LAT L+SLPKS++N V E++
Sbjct:    1 MIKLGDDAVSEIRSMVLSNDSRVFIFLRLYMMEKNNNNIYEVLDSKEYLTKPVVYTAWETGRDDILRNCVRTGVPIDANRSVASAIRSGSVETLDLCVEQGGSIEHFTRPYCHCTTTEMMEHIWAKYKKKLYDREAVFPRDLRFSIKYMEMGGTVAQMGKDMNDWCHREGNWRRSLPIKRAYTEKTGPYESTLATGLLSLPKSLVNLVCEFM 212
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNJ2_ESV1K2.990e-11375.00EsV-1-81 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:556268..556906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size639
Hectar predicted targeting categoryother localisation
Exons1
Cds size639
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791336.2777028-CDS-P-littoralis_Contig64:556267..5569061680791336.2777028-CDS-P-littoralis_Contig64:556267..556906Pylaiella littoralis U1_48CDSP-littoralis_Contig64 556268..556906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.139.1prot_P-littoralis_Contig64.139.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 556268..556906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.139.1

>prot_P-littoralis_Contig64.139.1 ID=prot_P-littoralis_Contig64.139.1|Name=mRNA_P-littoralis_Contig64.139.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=213bp
MIKLSDDAVHEVRSMVLSNDSRVFRFLRIYMLQTKENNICEVLDSKEFLT
KPVVFTAWETGRADILQNCVRKGVLINATLSVTSAIRSGCIATLDFCVEQ
GGSVDDLKRPYCHCTTTEMMQHIWTKYKKKLYDREAVFPRDLDISIKYME
MGGTVAQMGKELNESCQREGNWRRSLPIKRAYMENNGPYGCKLATELMSL
PKSVINRVGEYI*
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mRNA from alignment at P-littoralis_Contig64:556268..556906-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.139.1 ID=mRNA_P-littoralis_Contig64.139.1|Name=mRNA_P-littoralis_Contig64.139.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig64:556268..556906- (Pylaiella littoralis U1_48)
ATGATCAAGTTGAGCGACGACGCCGTGCACGAAGTTCGATCGATGGTGCT
CAGCAACGACAGCCGTGTCTTCAGATTTCTGCGTATCTACATGCTTCAGA
CCAAGGAAAACAACATTTGCGAAGTCCTAGATTCAAAAGAGTTTTTGACG
AAGCCCGTTGTTTTTACCGCATGGGAAACGGGACGAGCTGATATTCTGCA
AAATTGTGTTCGCAAAGGAGTTTTAATTAACGCTACACTAAGCGTGACAT
CGGCCATACGCTCTGGGTGTATTGCGACACTTGACTTTTGTGTAGAGCAA
GGGGGGTCAGTGGATGATTTGAAGAGACCTTATTGCCACTGTACGACTAC
GGAAATGATGCAACATATTTGGACAAAATACAAAAAAAAGTTATACGACA
GAGAAGCAGTGTTTCCGAGAGATCTAGACATTTCTATCAAGTATATGGAA
ATGGGTGGTACTGTTGCACAAATGGGGAAAGAACTAAACGAATCGTGTCA
ACGAGAAGGAAACTGGAGGCGGTCCCTACCGATCAAGCGCGCGTACATGG
AAAACAATGGTCCATATGGATGTAAGTTAGCGACGGAGTTGATGTCGTTA
CCTAAGAGTGTAATTAATCGTGTTGGCGAGTACATTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:556268..556906-

>mRNA_P-littoralis_Contig64.139.1 ID=mRNA_P-littoralis_Contig64.139.1|Name=mRNA_P-littoralis_Contig64.139.1|organism=Pylaiella littoralis U1_48|type=CDS|length=639bp|location=Sequence derived from alignment at P-littoralis_Contig64:556268..556906- (Pylaiella littoralis U1_48)
ATGATCAAGTTGAGCGACGACGCCGTGCACGAAGTTCGATCGATGGTGCT
CAGCAACGACAGCCGTGTCTTCAGATTTCTGCGTATCTACATGCTTCAGA
CCAAGGAAAACAACATTTGCGAAGTCCTAGATTCAAAAGAGTTTTTGACG
AAGCCCGTTGTTTTTACCGCATGGGAAACGGGACGAGCTGATATTCTGCA
AAATTGTGTTCGCAAAGGAGTTTTAATTAACGCTACACTAAGCGTGACAT
CGGCCATACGCTCTGGGTGTATTGCGACACTTGACTTTTGTGTAGAGCAA
GGGGGGTCAGTGGATGATTTGAAGAGACCTTATTGCCACTGTACGACTAC
GGAAATGATGCAACATATTTGGACAAAATACAAAAAAAAGTTATACGACA
GAGAAGCAGTGTTTCCGAGAGATCTAGACATTTCTATCAAGTATATGGAA
ATGGGTGGTACTGTTGCACAAATGGGGAAAGAACTAAACGAATCGTGTCA
ACGAGAAGGAAACTGGAGGCGGTCCCTACCGATCAAGCGCGCGTACATGG
AAAACAATGGTCCATATGGATGTAAGTTAGCGACGGAGTTGATGTCGTTA
CCTAAGAGTGTAATTAATCGTGTTGGCGAGTACATTTAA
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