mRNA_P-littoralis_Contig64.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.77.1
Unique NamemRNA_P-littoralis_Contig64.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: D8LQ55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ55_ECTSI)

HSP 1 Score: 460 bits (1184), Expect = 1.570e-158
Identity = 245/274 (89.42%), Postives = 251/274 (91.61%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQAEKRRRVEDGEEEEGG-ADDEDVQDVQGQAAXXXXXXTSAQVRAHVPVPSQDAIKEAILKRKKLALLKRLDGGEATPEDDIED 1040
            MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRET+KSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRI+ELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAK LPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAV EKRKVQ AV EWQAEKRRR+EDGEEE GG ADDE          XXXXXX SA+VRAHVPVPSQDAIKEAILKRKKL LLKRLDG E   + +IED
Sbjct:    1 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETSKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRILELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKGLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVMEKRKVQSAVSEWQAEKRRRLEDGEEEAGGDADDEXXXXXXXXXXXXXXXXXSAEVRAHVPVPSQDAIKEAILKRKKLTLLKRLDGEEDAADGEIED 274          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: W7TA77_9STRA (Pre-mrna-splicing factor isy1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA77_9STRA)

HSP 1 Score: 277 bits (709), Expect = 7.920e-87
Identity = 156/270 (57.78%), Postives = 187/270 (69.26%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQAEKRRRVEDGEEEEGGADDEDVQDVQGQAAXXXXXXT-----------SAQVRAHVPVPSQDAIKEAILKRKKLALLKR 998
            MARNEEKAQ M+NKW TMK+ +A  ++ RRPFLSS+C  L +AE WRR II+E TK V  +QNAG GEH++RDLNDQINKLLRE+ HW KRI ELGGPDY    P++YDADGRELPGGGGY YFGAAKDLPGV+ELF KS  +  RRTR DMY+ I PDYYGYRDEEDG+L+ KE   EK  +  AV +++   R    +GEE E G              XXXXXX            SA V+AHVPVP Q+ I  A++++KK ALL +
Sbjct:    1 MARNEEKAQAMLNKWLTMKKDLATGDKERRPFLSSDCHVLSEAERWRRQIIKEVTKKVSEVQNAGLGEHRLRDLNDQINKLLREKYHWQKRIKELGGPDYNRIEPRAYDADGRELPGGGGYRYFGAAKDLPGVKELFQKSAPKEMRRTRGDMYKGIDPDYYGYRDEEDGILLEKEREAEKEAIAAAVRQFKKRAREEKGEGEETEXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAVKAHVPVPCQEDIMTALMEKKKRALLSK 270          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: A0A7S2S7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7Y0_9STRA)

HSP 1 Score: 270 bits (691), Expect = 7.080e-84
Identity = 153/287 (53.31%), Postives = 192/287 (66.90%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAK---PERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQAEKRRRVE----DGEE-----------EEGGADDEDVQDVQGQAAXXXXXXTSAQVRAHVPVPSQDAIKEAILKRKKLALLKRL------DGG 1010
            MARNEEKA  ++NKW TMK + AK   P+R  RP+L++ECD+L+ AE WR D+I+E +K +  IQNAG GEH+IRDLNDQINKLLRE+ HW KRI ELGGPDY A  P+S+DADGRELPGGGGY YFGAAK+LPGVRELF     + PRRTR  +Y+ ITPDYYGYRDE+D  L+ KEA+ EK  ++EA  + Q  KR+R      +GE            ++  A         G+A       +S   +AHVPVPSQD +K+AIL  +K  LL++L      DGG
Sbjct:    1 MARNEEKAMSLLNKWVTMKSEFAKGGGPQR--RPYLATECDDLRQAERWRLDVIKEVSKGIGEIQNAGLGEHRIRDLNDQINKLLREKFHWQKRIRELGGPDYNAIEPRSFDADGRELPGGGGYKYFGAAKELPGVRELFQAEAPQRPRRTRAQIYKTITPDYYGYRDEDDEDLLRKEALAEKEAIEEADAQHQRLKRQRXXXXXXNGEXXXXXXXXXXXXDDAAAMAAAAHSNFGEAMARASAASSTVAKAHVPVPSQDEVKQAILDHRKQQLLQQLGVAPSSDGG 285          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: K3X334_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X334_GLOUD)

HSP 1 Score: 239 bits (611), Expect = 4.770e-73
Identity = 112/189 (59.26%), Postives = 149/189 (78.84%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLE 788
            MARNEEKAQ ++N+WT+MK+  +   + RRP+L+S+CDN++DAE WRR IIRE +K V  IQNAG+GEH IRDLND+INK +RE+ HW+KRIVELGGPDY+ + P++YDADG  + GGGGY YFGAAK+LPGVRELF K +    +RTR+DM++ I PDYYG+RDEED   + +E +  +  +Q+A +E
Sbjct:    1 MARNEEKAQSLLNRWTSMKQDFSDTFKNRRPYLASQCDNIKDAERWRRQIIREISKKVADIQNAGSGEHVIRDLNDEINKRMREKRHWEKRIVELGGPDYSRSQPQAYDADGSSVQGGGGYKYFGAAKNLPGVRELFQKEERAPKKRTRQDMFKNIEPDYYGFRDEEDDPQLLQEELEVEAALQKAAIE 189          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: UPI000C03B492 (pre-mRNA-splicing factor ISY1 homolog n=3 Tax=Astrocoeniina TaxID=123757 RepID=UPI000C03B492)

HSP 1 Score: 240 bits (612), Expect = 3.480e-72
Identity = 136/271 (50.18%), Postives = 176/271 (64.94%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMA-KPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQAEKRR----RVEDGEEE-------EGGADDEDVQDVQGQAAXXXXXXTSAQVRAHVPVPSQDAIKEAILKRKKLALLKR 998
            MARN EKA  M+ +W  ++ + A K  + RRPFL++ECDNLQ+AE WR+ IIRE  K V  IQNAG GE +IRDLND+INKLLRE+ HW+ RI ELGGPDYA   PK  D +G+E+PG  GY YFGAAKDLPGVRELF +     PR+TR ++Y+ +  DYYGYRDE+DGVLV  E   EK  +  A+ EW+ +K        +D EEE       E    DED++  Q +              AHVPVPSQ  ++E +++RKK+ LL++
Sbjct:    1 MARNAEKAMTMLARWYDLQRKEAGKGIKERRPFLATECDNLQEAEKWRQQIIREVAKKVAQIQNAGLGEFRIRDLNDEINKLLREKRHWEDRIKELGGPDYAKIGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEQEPPAPPRKTRGELYKDVDADYYGYRDEDDGVLVPLEQEVEKEAIARALDEWERKKEAGELVTEQDQEEENIYAVTKEQEESDEDMETDQTEEGNQPFV-------AHVPVPSQKEVEEMLVQRKKMELLEK 264          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: A0A2C9JS12_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JS12_BIOGL)

HSP 1 Score: 239 bits (610), Expect = 9.440e-72
Identity = 136/276 (49.28%), Postives = 180/276 (65.22%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQAEKRRRVEDGE---EEEGGA-------------DDEDVQDVQGQAAXXXXXXTSAQ-VRAHVPVPSQDAIKEAILKRKKLALLKR 998
            MARN EKA   + +W   +    K E+ RRP+L+S+CDNLQ+AE WRR II E ++ V  IQNAG GE K+RDLND+INKLLRE+ HW+ RIVEL GPDY    PK  D+DG+E+PG  GY YFGAAKDLPGVRELF +     PR+TR ++ + I  DYYGYRDE+DG+++  EA  EK+ ++  V EW+ EK+ +V+ GE   EE  GA             DDE+ + ++   +         Q   AHVPVPSQ  I++A+L RKK+ L++R
Sbjct:    1 MARNSEKAMTTLARWRASQVGGIK-EKERRPYLASDCDNLQEAEKWRRQIIGEISRKVAQIQNAGLGEFKLRDLNDEINKLLREKGHWEDRIVELNGPDYKKTGPKMLDSDGKEVPGNKGYKYFGAAKDLPGVRELFDQEPAPAPRKTRAELMKDIDADYYGYRDEDDGIIIPLEAEVEKQVIKTKVQEWK-EKQNKVQTGEMTHEEAHGAEEELFSKEALAEKDDEEDESLKPSTSKDFYREFDKQHFIAHVPVPSQKEIEQALLHRKKMELIQR 274          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: UPI0003597C0E (pre-mRNA-splicing factor ISY1 homolog n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003597C0E)

HSP 1 Score: 239 bits (610), Expect = 9.440e-72
Identity = 136/276 (49.28%), Postives = 178/276 (64.49%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQAEKRRRVEDGE--EEEG-------------GADDEDVQDVQGQAAXXXXXXTSAQVR--AHVPVPSQDAIKEAILKRKKLALLKR 998
            MARN EKA   + +W   +    K E+ RRP+L+S+CDNL +AE WRR II E ++ V  IQNAG GE K+RDLND+INKLLRE+ HW+ RI+ELGGPDY    PK  D+DG+E+PG  GY YFGAAKDLPGVRELF +     PR+TR ++ + I  DYYGYRDE+DG++V +E   E++ +   V EW+ EK+ +V+ GE  EEE                DD +VQ+V+ +             R  AHVPVPSQ  I+ A+L RKK+ LL+R
Sbjct:    1 MARNSEKAMTTLARWRASQVGEIK-EKDRRPYLASDCDNLHEAEKWRRQIIGEISRKVAQIQNAGLGEFKLRDLNDEINKLLREKGHWEDRILELGGPDYRKTGPKMLDSDGKEVPGNKGYKYFGAAKDLPGVRELFEQEPPPPPRKTRAELMKDIDADYYGYRDEDDGIIVPQELEAERKAISSKVREWK-EKQNKVKSGEMTEEEATGKEEELFTAAELAEDDLEVQEVEMEPTESTSDLDLDNQRFIAHVPVPSQKEIEAALLMRKKMELLQR 274          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: UPI001884C45C (pre-mRNA-splicing factor ISY1 homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884C45C)

HSP 1 Score: 238 bits (608), Expect = 1.060e-71
Identity = 134/270 (49.63%), Postives = 170/270 (62.96%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQAEKRRRVEDGEEEEGGADDEDVQDVQGQAAXXXXXXTSAQVRAHVPVPSQDAIKEAILKRKKLALLKRLDGGEATPEDD 1031
            MARN EKA   + +W     + A PE+ RRP+L+SECD L DAE WR  I+RE  + V  IQNAG GE +IRDLND+INKLLRE+ HW+ RI ELGGPDYA   PK  D +G+E+PG  GY YFGAA+DLPGVRELF +     PR+TR ++ + I  DYYG+ D+EDGVLV +E   E+R V   + EW+A K   V D EE +  A D D ++    AA            AHVPVPSQ  ++ A+++RKK  LL R        E+D
Sbjct:    1 MARNAEKAMTTLARWRQAHSE-AGPEKTRRPYLASECDQLPDAERWRNQIVREVARKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEARIKELGGPDYARTGPKMLDREGKEVPGNRGYRYFGAARDLPGVRELFEQEPPPPPRKTRAELMKDIDADYYGFLDDEDGVLVPREREQERRAVAAWLAEWRARKEAGV-DTEEGDAPAHDVDSEEETDAAAPRFV--------AHVPVPSQQEVEAALVERKKRELLARYASQALVDEED 260          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: H3GPB1_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GPB1_PHYRM)

HSP 1 Score: 235 bits (600), Expect = 1.950e-71
Identity = 112/192 (58.33%), Postives = 146/192 (76.04%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQA 797
            MARNEEKAQ ++N+WT+MK+  A   + RRP+L+S+CDNL+DAE WRR I+RE +K V  IQNAG+ EH IRDLND+INK +RE+ HW++RIV+LGG +YA + P++YDADG E+ G GGY YFGAAK+LPGVRELF K + E  +R+R+DMY+ I PDYYG+RD+ED   +  E   E R  Q A+  W A
Sbjct:    1 MARNEEKAQSLLNRWTSMKQDFADTFKNRRPYLASQCDNLKDAERWRRQIVREISKKVADIQNAGSSEHVIRDLNDEINKRIREKRHWERRIVQLGGTNYARSQPQAYDADGSEVRGAGGYKYFGAAKNLPGVRELFQKEEPEARKRSRQDMYKHIEPDYYGFRDDEDEQQLKDEEEAENRLRQRALDGWDA 192          
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Match: D0NZZ7_PHYIT (Pre-mRNA-splicing factor ISY1 n=19 Tax=Phytophthora TaxID=4783 RepID=D0NZZ7_PHYIT)

HSP 1 Score: 234 bits (598), Expect = 4.010e-71
Identity = 113/192 (58.85%), Postives = 144/192 (75.00%), Query Frame = 3
Query:  222 MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDIIRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDYAANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRKDMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQA 797
            MARNEEKAQ ++N+WT+MK+  A   + RRP+L+S+CD L+DAE WRR IIRE +K V  IQNAG+ EH IRDLND+INK +RE+ HW++RI +LGGPDY+ + P+SYDADG  +   GGY YFGAAK+LPGVRELF K DVE  +RTR+ MY+ I PDYYG+RD++D   +  E   EKR  Q A+  W A
Sbjct:    1 MARNEEKAQSLLNRWTSMKQDFADTFKNRRPYLASQCDTLKDAERWRRQIIREISKKVADIQNAGSSEHVIRDLNDEINKRIREKRHWERRIAQLGGPDYSKSQPQSYDADGTPVSSVGGYKYFGAAKNLPGVRELFQKEDVEPRKRTRQHMYKHIKPDYYGFRDDDDEQQLKDEDEAEKRLRQRAMDGWDA 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ55_ECTSI1.570e-15889.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TA77_9STRA7.920e-8757.78Pre-mrna-splicing factor isy1 n=1 Tax=Nannochlorop... [more]
A0A7S2S7Y0_9STRA7.080e-8453.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3X334_GLOUD4.770e-7359.26Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI000C03B4923.480e-7250.18pre-mRNA-splicing factor ISY1 homolog n=3 Tax=Astr... [more]
A0A2C9JS12_BIOGL9.440e-7249.28Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
UPI0003597C0E9.440e-7249.28pre-mRNA-splicing factor ISY1 homolog n=1 Tax=Aply... [more]
UPI001884C45C1.060e-7149.63pre-mRNA-splicing factor ISY1 homolog n=1 Tax=Poll... [more]
H3GPB1_PHYRM1.950e-7158.33Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
D0NZZ7_PHYIT4.010e-7158.85Pre-mRNA-splicing factor ISY1 n=19 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:344799..348621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQ55
Preferred nameISY1
PFAMsIsy1
Model size1543
Max annot lvl2759|Eukaryota
KEGG koko:K10352,ko:K12870
KEGG Pathwayko03040,ko04530,map03040,map04530
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000350,GO:0000375,GO:0000377,GO:0000389,GO:0000393,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0050896,GO:0051716,GO:0065003,GO:0070013,GO:0071008,GO:0071012,GO:0071013,GO:0071014,GO:0071020,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons3
Evalue3.88e-162
EggNOG OGsKOG3068@1|root,KOG3068@2759|Eukaryota
Ec32 ortholog descriptionIsy1-like splicing
Ec32 orthologEc-26_006080.1
Descriptiongeneration of catalytic spliceosome for second transesterification step
Cds size822
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791333.7235115-UTR-P-littoralis_Contig64:344798..3452981680791333.7235115-UTR-P-littoralis_Contig64:344798..345298Pylaiella littoralis U1_48UTRP-littoralis_Contig64 344799..345298 -
1680791333.7723634-UTR-P-littoralis_Contig64:348400..3486211680791333.7723634-UTR-P-littoralis_Contig64:348400..348621Pylaiella littoralis U1_48UTRP-littoralis_Contig64 348401..348621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791333.7354069-CDS-P-littoralis_Contig64:345298..3454691680791333.7354069-CDS-P-littoralis_Contig64:345298..345469Pylaiella littoralis U1_48CDSP-littoralis_Contig64 345299..345469 -
1680791333.749595-CDS-P-littoralis_Contig64:346783..3469431680791333.749595-CDS-P-littoralis_Contig64:346783..346943Pylaiella littoralis U1_48CDSP-littoralis_Contig64 346784..346943 -
1680791333.7621806-CDS-P-littoralis_Contig64:347909..3484001680791333.7621806-CDS-P-littoralis_Contig64:347909..348400Pylaiella littoralis U1_48CDSP-littoralis_Contig64 347910..348400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.77.1prot_P-littoralis_Contig64.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 345299..348400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.77.1

>prot_P-littoralis_Contig64.77.1 ID=prot_P-littoralis_Contig64.77.1|Name=mRNA_P-littoralis_Contig64.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
MARNEEKAQMMMNKWTTMKEQMAKPERGRRPFLSSECDNLQDAELWRRDI
IRETTKSVHLIQNAGAGEHKIRDLNDQINKLLRERTHWDKRIVELGGPDY
AANAPKSYDADGRELPGGGGYMYFGAAKDLPGVRELFHKSDVENPRRTRK
DMYQFITPDYYGYRDEEDGVLVAKEAVTEKRKVQEAVLEWQAEKRRRVED
GEEEEGGADDEDVQDVQGQAAAAASAATSAQVRAHVPVPSQDAIKEAILK
RKKLALLKRLDGGEATPEDDIED*
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mRNA from alignment at P-littoralis_Contig64:344799..348621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.77.1 ID=mRNA_P-littoralis_Contig64.77.1|Name=mRNA_P-littoralis_Contig64.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3823bp|location=Sequence derived from alignment at P-littoralis_Contig64:344799..348621- (Pylaiella littoralis U1_48)
ATAGTTCTGCGTAGTTTTTACCGAAGATAGAAGATAAAGGCACCAGGTAT CGAGGTGTGGAAGGTGCAACAGGCGGTAGTTGAGCAATATATTCAGCTGG GCTGCTGAAGCTGCTGTTGTGTTGCTGCTCCCGCTGCTACTGCCGCTGCC CTTCTCTGTAGGACTGCCACATACGTCAACATCCAGCAGCGTTTCCTTGA AGGACACACCCGGCTGCAACCATGGCGCGGAATGAGGAGAAGGCGCAGAT GATGATGAACAAATGGACCACAATGAAGGAGCAGATGGCTAAGCCGGAAC GCGGGAGAAGACCCTTCCTCTCCTCAGAGTGCGACAACCTTCAGGACGCG GAGCTCTGGCGAAGGGACATCATCCGCGAGACGACCAAGAGCGTCCACCT CATCCAAAATGCCGGGGCCGGGGAGCACAAGATCCGCGACCTCAACGACC AGATCAATAAGCTATTGCGAGAGCGAACCCATTGGGACAAGAGAATAGTC GAGCTCGGCGGGCCGGACTACGCCGCCAACGCGCCCAAGTCGTACGATGC GGACGGCCGAGAGCTGCCCGGCGGAGGGGGGTATATGTACTTCGGGGCCG CGAAGGATCTGCCCGGGGTGCGCGAGTTGTTTCACAAGTCGGACGTGGAA AATCCCAGGAGGACTCGAAAAGATATGTATCAATTCATAACTCCAGACTA CTACGGGTACAGGTGAGCCCAATAAAAAAAAGCCAGCCGAATCAGTCGAT CGTGTTGTTTCTTCGCTTTTTCTATGTGCCCCCCCTTGCGGTAGAGGAGA CAGTTACTGCTGTAGGCGACAGCAGCGATGCAGGAGTGTCCGTGGGACAG CTGTAGAACACTGCAAGACTCGTGGAATTGGTCATCTACCAACAGGCTCT GACGACAGATACTGCTGTACCGTGGTATCCCCAATTTGCAGTTTAAACAC TGCAAAAGTTATTTGCAGTTTAACTTGACAACACTCTTCATGATCTATGC CGCTCCCGACCAACCTATATAGCCCTAACCCACACGCCCGATCTCTGGAG TGAAAACCATAACCCTAACCCTAACCCTAACCATACGGCAGTTGCTTGCG ACACGGTGCCCCCTCCGCACGCCGCACATCTCCGGTCTCTCGCGCGTGCG CTTTGTCACGACAAAGTGTGTATCATGGTGTGCTTCTCTGCTGGACGCAA CTGCTTCGTGTGCTGCGAATTCATTGTCTCACTTCTTATTGTTTATTGCA AAATGCGGACAGCACCCTGCGGACATTCTGCGACAGCAGTAGTTTGTATG CAGCAAATGGATGAGTCTCCTTCGTTGCAACCGCTTTGGCGCTTCGGCGC TACAAGAGTTTCATGCAGTCAATCTTTCGAAACAGAGAGGACGCATGCCC TTATTTCCTGGCAATTTTTTTGTCCATGGGTCGTGGTTTCGCTTGCTTGG TTTTGCCATCAGGGGCAGGGTGGGGCTTTGTCTGTTTTATTTTACTGTGA AGGGGCGGGGAGGAGGGGCGGGGCTCTTTTTTATCTCAGAGACTTACGTG TATAAATCAATGTCTATGATGGCGCCGGGCACCCAAAATTTCCAAGCCAA CACAACGATAGAAACCGTGTTCATGTCTTCCTTGCGTTCTTTTTTGTGGT ATCGTTCAATGTGAAACCACGCGCATAGAGACGAAGAGGATGGCGTCCTG GTGGCGAAGGAAGCGGTGACGGAAAAGAGGAAGGTGCAGGAGGCGGTGTT GGAGTGGCAGGCTGAGAAGCGCCGCAGAGTGGAAGATGGGGAGGAGGAGG AGGGAGGCGCCGACGATGAGGACGTGCAAGACGTTCAGGTACAGCTGGTG TGCTACAGCATGTGCTGCATGTGCTTCTTGTACGCCAGTTCTCTTTTATT CGCGACGTGTCTTGGTTGGAGATGATTCAAGGCCACCGGGGAATGGGGTG CAAAATAAGTTGCAGGCTTTCGACAAAGGCCTGATTATTCTGGGTTTCCC AAGGGTATTTTTAGTACTTGAGTATGAATTTACCACTGGAGAACTATCCC GGAGGCAGTCGCTGTGAGCAATAAGTAGTGTCTTAGATTCAAGTCCTCGC GACATGCTTCAGATGCACCGTTTCCGGTTTTTGAAAGAAGCCCTGGTTCA TCGAGTTCTTTGAGCTACGAGGTGCGGTTCGGATACTGCTGTAGCAGCCA TATTTTTGAATGCTCCCGGCAACAGCGCCCGGAAATATGGGTCATAAGTG AGTGCCTCCGACCTTCATATCAATCACGGCCATAGGTAAGGCATGTGAGG AGGGCGTTGTGCTGAATTTGCGGTCGCAGGTACTCATGTATGCTTTGCTT TTTCGGGTGCCGTGTGCCGGAACCGTTCAAAAAATGGCCGCTACAGCATA CGTCAAATTTGGTGTCTTTGTGCGTTTCGTCTCGATATTCCTGACTCGCA TTCCACAGCAGACGGCGTTGACAGATAGGGGAACGCTTTAGTTTAGCCGC TAATATTGAGCTCTTTCCACGCGCTTGTGCGCGCACAATGGGTCGTAACG TATGTCAACTTTTGTAGAACCCCCGATGTGTATTCGGCGAGAAACTACTC GCACAAAGAAGAAGTACAGGGTGAAGTTTGAGCAATATGTAGAGTACGTG AGAGCAACTACGGAGTACTTGTACAATACAGCAGTGTGGGCTAAACCAAG TCCAAGGCGCCTTCCGTTTTGTTCAGGTGCATCCAAGTATGCATAACGTA CTTTTGATTCCAAGCAAGTTGTAACCTGTACTACTTTTGAATGGCTTCTG CCGTATGTTCTGGGGTTCTTTCATTTTGCGCCTGGGCTGTGACCACGGAC TATCTTTTTTTCGTTGGGCTCGTGGAAAAATAATACAGAGTTGCAATTCC TCGCCTTTATGACGTGCCCTCCGTAAGTACCAGGCGTTCGGAGTGGCGTG GAGAGAACGAAAGTTTTTTCGATCCAGTATGAAACGCCTGGTTCACGCCG CTCTAATTCGCGGCAGCTTGAGGAGGGCATGCATCCGCGGCTCACCACCT TCAACGCTCTAGAACGTTTTCGCAATTGTTATCATTCGTTTGTACGAAGT ACGAAGTACGGAGTATTTATTTTTATGTTCTTCTGCTTTGATCTCCCCAC AGGGGCAGGCGGCTGCAGCAGCATCGGCCGCAACATCGGCACAAGTGCGG GCACACGTTCCAGTCCCTTCGCAGGATGCCATCAAGGAGGCCATTCTCAA GAGGAAAAAACTGGCGCTGTTGAAACGGTTGGATGGTGGGGAGGCTACCC CCGAGGACGACATAGAAGACTGATATGCTACGTACTTTGCACTACGTAAA ATGTGCCTTTGTACCCTTCAAGCTCTCGCTTGAAAAAATTGCGCCGGAAG ATAGTTTGTTGCCGCGCTCCCAAGGGCCTGTACGCGTTGGGTATGGGTAC CGGGTTTACGCATGTATTTCTGTCTGTTTCTCCTGCTGTTTGTCCCTCAT GCCGAAATTCAATTTCTGGACTTCTTCTGTCGCGGCGCCGGGGTTCAAGA AAAATAGTTATTTACGTCCTTTTTCAGCCGTTTACACCGCATCAGGTTGA GGCTCGCGTTGCTCTGGAAGTACGAAAGCGCCAGCACATTGAAAATCGCA ACATGCTGTTTTGGACAAAGTTCCTGAAAATGAAGATATCCGTATCCCCG ACCATGTGAAAGTGTACACGGTCATCGGGTTGTTGTTGTTGATTCTAACA TTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATA TCGTGCTAGGAGGAAAAAAAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:344799..348621-

>mRNA_P-littoralis_Contig64.77.1 ID=mRNA_P-littoralis_Contig64.77.1|Name=mRNA_P-littoralis_Contig64.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig64:344799..348621- (Pylaiella littoralis U1_48)
ATGGCGCGGAATGAGGAGAAGGCGCAGATGATGATGAACAAATGGACCAC
AATGAAGGAGCAGATGGCTAAGCCGGAACGCGGGAGAAGACCCTTCCTCT
CCTCAGAGTGCGACAACCTTCAGGACGCGGAGCTCTGGCGAAGGGACATC
ATCCGCGAGACGACCAAGAGCGTCCACCTCATCCAAAATGCCGGGGCCGG
GGAGCACAAGATCCGCGACCTCAACGACCAGATCAATAAGCTATTGCGAG
AGCGAACCCATTGGGACAAGAGAATAGTCGAGCTCGGCGGGCCGGACTAC
GCCGCCAACGCGCCCAAGTCGTACGATGCGGACGGCCGAGAGCTGCCCGG
CGGAGGGGGGTATATGTACTTCGGGGCCGCGAAGGATCTGCCCGGGGTGC
GCGAGTTGTTTCACAAGTCGGACGTGGAAAATCCCAGGAGGACTCGAAAA
GATATGTATCAATTCATAACTCCAGACTACTACGGGTACAGAGACGAAGA
GGATGGCGTCCTGGTGGCGAAGGAAGCGGTGACGGAAAAGAGGAAGGTGC
AGGAGGCGGTGTTGGAGTGGCAGGCTGAGAAGCGCCGCAGAGTGGAAGAT
GGGGAGGAGGAGGAGGGAGGCGCCGACGATGAGGACGTGCAAGACGTTCA
GGGGCAGGCGGCTGCAGCAGCATCGGCCGCAACATCGGCACAAGTGCGGG
CACACGTTCCAGTCCCTTCGCAGGATGCCATCAAGGAGGCCATTCTCAAG
AGGAAAAAACTGGCGCTGTTGAAACGGTTGGATGGTGGGGAGGCTACCCC
CGAGGACGACATAGAAGACTGA
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