mRNA_P-littoralis_Contig64.31.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 236 bits (601), Expect = 1.740e-77 Identity = 125/135 (92.59%), Postives = 126/135 (93.33%), Query Frame = 1
Query: 1 PDTSHLLITKSITTMSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 405
P S IT S TTMSGKGKGGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK
Sbjct: 32 PPLSVYFITNSTTTMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 227 bits (579), Expect = 6.510e-75 Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 1
Query: 43 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 408
MSGKGKGGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.770e-68 Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 43 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 399
MSGKGKGGRGKKS ++S+KAGLQFPV R+GR+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 211 bits (538), Expect = 9.150e-68 Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 43 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 399
MSGKGKGGRGKKS ++S+KAGLQFPV R+GR+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK+
Sbjct: 52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 170
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 208 bits (529), Expect = 2.480e-67 Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1
Query: 43 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 396
MSGKGKGGRGKK +RSAKAGLQFPVGR+GRF+K GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: A0A8J4LZJ7_9CHLO (Histone H2A n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LZJ7_9CHLO) HSP 1 Score: 204 bits (519), Expect = 4.520e-65 Identity = 105/134 (78.36%), Postives = 119/134 (88.81%), Query Frame = 1
Query: 1 PDTSHLLITKSITTMSGKGKG-GRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKT 399
P T L + + + TM+G+GKG GKK+V+RSAKAGLQFPVGR+ R+LK GKYA R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RI+PRHIQLA+RNDEEL KLLG+VTIASGGVLPNIHAVLLPKK+
Sbjct: 26 PLTKSLKVVRDVATMAGRGKGKSAGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIIPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 159
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE) HSP 1 Score: 223 bits (569), Expect = 4.880e-65 Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 1
Query: 43 MSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 402
MSGKGKGGRGKKS TRSAKAGLQFPVGRVGRFLK GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: A0A7S3CML3_9SPIT (Histone H2A (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CML3_9SPIT) HSP 1 Score: 203 bits (516), Expect = 5.350e-65 Identity = 108/135 (80.00%), Postives = 121/135 (89.63%), Query Frame = 1
Query: 7 TSHLLITKSITTMSGKGKG-GRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 408
+S+ L+ + MSGKGKG GKK+V+RSAKAGLQFPVGRV R+LK GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG VTIA+GGVLPNIH+VLLPKK+ +K
Sbjct: 7 SSYPLLLNTFNNMSGKGKGRAPGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGNVTIAAGGVLPNIHSVLLPKKSAEK 141
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 201 bits (510), Expect = 2.150e-64 Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = 1
Query: 43 MSGKGKGGRG-KKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 405
MSGKGKGGRG KKS T SAKAGLQFPVGR+GR+L+ GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK+ K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 201 bits (511), Expect = 2.230e-64 Identity = 104/120 (86.67%), Postives = 113/120 (94.17%), Query Frame = 1
Query: 49 GKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 408
GKGK GKK+V+RSAKAGLQFPVGRV R+LK GKYA+R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK+ KK
Sbjct: 5 GKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig64.31.1 >prot_P-littoralis_Contig64.31.1 ID=prot_P-littoralis_Contig64.31.1|Name=mRNA_P-littoralis_Contig64.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp PDTSHLLITKSITTMSGKGKGGRGKKSVTRSAKAGLQFPVGRVGRFLKAGback to top mRNA from alignment at P-littoralis_Contig64:150589..150999+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig64.31.1 ID=mRNA_P-littoralis_Contig64.31.1|Name=mRNA_P-littoralis_Contig64.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig64:150589..150999+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig64:150589..150999+ >mRNA_P-littoralis_Contig64.31.1 ID=mRNA_P-littoralis_Contig64.31.1|Name=mRNA_P-littoralis_Contig64.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig64:150589..150999+ (Pylaiella littoralis U1_48)back to top |