mRNA_P-littoralis_Contig64.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.30.1
Unique NamemRNA_P-littoralis_Contig64.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 8.750e-70
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 2 
Query:   32 MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 379
            MAKTPSKKSAKAPKKAGDKK  NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 202 bits (513), Expect = 7.580e-65
Identity = 105/118 (88.98%), Postives = 114/118 (96.61%), Query Frame = 2 
Query:   26 STMAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 379
            STMAKTPSKKSAKAPKKAGDK  K KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   13 STMAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.370e-62
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 2 
Query:   32 MAKTPSKKSAKAPKKAGD-KKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 379
            MAK PSKK+AKAPKKA D KK K KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.640e-61
Identity = 107/120 (89.17%), Postives = 112/120 (93.33%), Query Frame = 2 
Query:   23 TSTMAKTPSKKSAKAPKKAGD-KKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 379
            T TMAK PSKK+AKAPKKA D KK K KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  131 TFTMAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 191 bits (484), Expect = 1.150e-60
Identity = 99/115 (86.09%), Postives = 109/115 (94.78%), Query Frame = 2 
Query:   32 MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 376
            MAKTPSKK+AKAPKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS 113
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BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.920e-60
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 2 
Query:   32 MAKTPSKKSAKAPKKAGDK--KTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 379
            MAKTPSKKSAKAPKK G+K    K KR ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 187 bits (474), Expect = 4.100e-59
Identity = 98/116 (84.48%), Postives = 106/116 (91.38%), Query Frame = 2 
Query:   32 MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 379
            MAKTPSK+SAKAPKKA       KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
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BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 4.820e-59
Identity = 100/116 (86.21%), Postives = 111/116 (95.69%), Query Frame = 2 
Query:   29 TMAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 376
            TMAKTPSKK+A APKKAG K+++ KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    7 TMAKTPSKKAA-APKKAGGKRSR-KRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 120
[Close]
BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: A0A7R9ZTA9_9STRA (Histone H2B n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTA9_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.410e-56
Identity = 97/115 (84.35%), Postives = 107/115 (93.04%), Query Frame = 2 
Query:   38 KTPSKKSAKAPKKAGDKKTKNK-RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 379
            KTPSK+SAKAPKKA    +K+K RTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:   64 KTPSKQSAKAPKKASTGSSKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 178
[Close]
BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 180 bits (456), Expect = 2.580e-56
Identity = 99/119 (83.19%), Postives = 111/119 (93.28%), Query Frame = 2 
Query:   32 MAKTPSKKS-AKAPKKA--GDKKTKNK-RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTS 376
            MAKTPSK++ AKA KKA  GDKK ++K R ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSS 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI8.750e-7098.28Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA7.580e-6588.98Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA1.370e-6289.74Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA1.640e-6189.17Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU1.150e-6086.09Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA1.920e-6085.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
B7FWR8_PHATC4.100e-5984.48Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA4.820e-5986.21Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7R9ZTA9_9STRA1.410e-5684.35Histone H2B n=1 Tax=Craspedostauros australis TaxI... [more]
B8BX20_THAPS2.580e-5683.19Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:149902..150292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size391
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue7.85e-70
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size360
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791330.9002156-CDS-P-littoralis_Contig64:149901..1502611680791330.9002156-CDS-P-littoralis_Contig64:149901..150261Pylaiella littoralis U1_48CDSP-littoralis_Contig64 149902..150261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791330.9136477-UTR-P-littoralis_Contig64:150261..1502921680791330.9136477-UTR-P-littoralis_Contig64:150261..150292Pylaiella littoralis U1_48UTRP-littoralis_Contig64 150262..150292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.30.1prot_P-littoralis_Contig64.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 149902..150261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.30.1

>prot_P-littoralis_Contig64.30.1 ID=prot_P-littoralis_Contig64.30.1|Name=mRNA_P-littoralis_Contig64.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MAKTPSKKSAKAPKKAGDKKTKNKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSSYSA*
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mRNA from alignment at P-littoralis_Contig64:149902..150292-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.30.1 ID=mRNA_P-littoralis_Contig64.30.1|Name=mRNA_P-littoralis_Contig64.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=391bp|location=Sequence derived from alignment at P-littoralis_Contig64:149902..150292- (Pylaiella littoralis U1_48)
CCTCTCATCAAGCTTTTCATTCACCAGCACAATGGCCAAGACCCCTTCTA
AGAAGTCCGCAAAGGCCCCCAAGAAGGCTGGCGACAAGAAGACAAAGAAC
AAGAGGACCGAGTCGTACTCTTCGTACATCTACAAGGTGCTCAAGCAGGT
GCACCCCGACACCGGTATCTCCAAGCGTGGCATGTCGATCATGAACTCGT
TCATCAACGACGTGTTCGAGCGTGTGGCCGGCGAGTCCGGCAAGCTCACC
CGCTACAACAAGAAGGCGACCCTGTCCTCGCGCGAGGTCCAGACCGCGGT
GCGTCTCATGCTCCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGTA
CGAAGGCTGTCACCAAGTTCACCTCTTCCTACTCGGCGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:149902..150292-

>mRNA_P-littoralis_Contig64.30.1 ID=mRNA_P-littoralis_Contig64.30.1|Name=mRNA_P-littoralis_Contig64.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig64:149902..150292- (Pylaiella littoralis U1_48)
ATGGCCAAGACCCCTTCTAAGAAGTCCGCAAAGGCCCCCAAGAAGGCTGG
CGACAAGAAGACAAAGAACAAGAGGACCGAGTCGTACTCTTCGTACATCT
ACAAGGTGCTCAAGCAGGTGCACCCCGACACCGGTATCTCCAAGCGTGGC
ATGTCGATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGG
CGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTGTCCTCGC
GCGAGGTCCAGACCGCGGTGCGTCTCATGCTCCCCGGAGAGCTGGCCAAG
CACGCCGTGTCCGAGGGTACGAAGGCTGTCACCAAGTTCACCTCTTCCTA
CTCGGCGTAA
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