mRNA_P-littoralis_Contig64.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.13.1
Unique NamemRNA_P-littoralis_Contig64.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.960e-39
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 MASAKTTYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPK 240
            MAS K TYN MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPAPK
Sbjct:    1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.950e-36
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    7 SAKTTYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAP 237
            +AK TYN MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMR ALKKG ESGKFIK+K+SYKLSPEAKKPAP
Sbjct:   96 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
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BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.820e-34
Identity = 64/76 (84.21%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    7 SAKTTYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 234
            +AK TY+ MVFDAIK+LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA
Sbjct:    4 TAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.050e-34
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   31 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPK 240
            MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKG E+GKFIKVKSSYKLS EAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.310e-33
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   31 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPK 240
            MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKG ESGKF+K+K+SYKLS EAKKPAPK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
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BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.040e-31
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:   31 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 234
            MVFDAIK+LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
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BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.420e-26
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:   31 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSP 216
            MVFDAIK+LKERNGSSIQA+KKSITATYPAL+FTPHQMRSALKKG E+GKFIKV+ +  L+P
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLAP 62
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BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.570e-25
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:   19 TYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 231
            TY+ M   AI +LKERNGSS+ AIKK I ATYP LNF PHQ+R ALKKGTE+G FIKVK+SYK+SPEAKKP
Sbjct:    3 TYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.480e-23
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:   19 TYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPKP 243
            TY+ M  +A+K+LKERNGSS+ AIKK ITA+YP+L FT H MRSALKKG ESGKFIKVK+SYKLS   ++PA KP
Sbjct:    3 TYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAKP 77
[Close]
BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.800e-20
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   19 TYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLS 213
            TY+ M  +A+K+LKERNGSS+ AIKK ITA+YP+L FT H +RSALKKG ESGKFIKVK+SYKLS
Sbjct:    3 TYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI3.960e-3988.75Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE1.950e-3688.31H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI1.820e-3484.21H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI2.050e-3494.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE1.310e-3390.00H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
A0A6H5JHR9_9PHAE1.040e-3188.24H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE5.420e-2682.26H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI5.570e-2573.24H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI4.480e-2369.33H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.800e-2072.31H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:84221..87419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWJ4
Preferred nameH1
PFAMsLinker_histone
Model size495
Max annot lvl2759|Eukaryota
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
Exons3
Evalue8.64e-40
EggNOG OGs2CYYI@1|root,2S79K@2759|Eukaryota
DescriptionDomain in histone families 1 and 5
Cds size495
COG categoryB
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791330.5381167-CDS-P-littoralis_Contig64:84220..845261680791330.5381167-CDS-P-littoralis_Contig64:84220..84526Pylaiella littoralis U1_48CDSP-littoralis_Contig64 84221..84526 -
1680791330.5539026-CDS-P-littoralis_Contig64:86879..870381680791330.5539026-CDS-P-littoralis_Contig64:86879..87038Pylaiella littoralis U1_48CDSP-littoralis_Contig64 86880..87038 -
1680791330.5636094-CDS-P-littoralis_Contig64:87389..874191680791330.5636094-CDS-P-littoralis_Contig64:87389..87419Pylaiella littoralis U1_48CDSP-littoralis_Contig64 87390..87419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.13.1prot_P-littoralis_Contig64.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 84221..87419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.13.1

>prot_P-littoralis_Contig64.13.1 ID=prot_P-littoralis_Contig64.13.1|Name=mRNA_P-littoralis_Contig64.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=165bp
MASAKTTYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRS
ALKKGTESGKFIKVKSSYKLSPEAKKPAPKPKKKVVKKKVVKKKVVKKKV
VKKVAKKPAVKKTVAKKKPAVKKTVAKKTTGVKKTVTKKKPAAGAKKPTT
KKATPKKKPAPQKA*
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mRNA from alignment at P-littoralis_Contig64:84221..87419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.13.1 ID=mRNA_P-littoralis_Contig64.13.1|Name=mRNA_P-littoralis_Contig64.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3199bp|location=Sequence derived from alignment at P-littoralis_Contig64:84221..87419- (Pylaiella littoralis U1_48)
ATGGCGTCCGCGAAGACCACGTACAATACGGTAAGCGAGATATGCTCGTC
GCGTGTCAGCTGGACGCCAGTCTCAGACTTTCGGGGATGTTTTGAGGTGC
CCTTTGAATACCAGTACTTCATCTGACTCTTGACACGCGAAGATATTCTG
GATGGTCGAGTAGAGGATGCAAACTCGAGTGCTTGAGAGCCGTACAGCAG
TACAGCGCAGCAAACATGGACTAGAATAGCGTGTTTCGTGTCCTCCGGTT
CTTCTAACCTCGGTTTAAGAGGGAACCCAGCTACGACAAAAAACGAATCA
TCTATCCTGCCCCCGTTCATTTTTTGTTTTTTCGCTCTTTCCCTTGTCTG
GATTCGTGCCCCTGGCTTTTTATTTTTCAAGATGGTATTCGATGCCATCA
AGAGCTTGAAGGAGAGGAACGGGTCGTCCATCCAGGCCATCAAGAAGAGC
ATCACTGCCACTTACCCGGCCCTCAACTTCACGCCGCACCAGATGCGCAG
CGCTCTCAAGAAAGGAACCGAATCCGGCAAGTTCATCAAGGTGAGAGATG
CCCCGGCTTTACTTGCACGTGAGCCGTTGCACGAACGATATGCCCTTGGT
GATGTGAGGTTTAAAGTTTGAGCCGTTTGTTCGCCAGCCGGGCCGGAGTG
ACACGCGATTTTGTTGTGGTCGACACCTTTCAGCACCAACAGGCAGCATG
TTTAGGTTTGTGCATGTACTGCGTACAGTACGTACGAGCAAGTAGAAGGC
CTGTTTGAACGAAAATGGTAGCGACCGGATTGGAATCAAGGCGGAATTTA
GTCGGCCCTACCCAGCTTCTACATAATACTGTACGGGACGGGGGGCAAGC
GTCGTTGTTTTTTCACCCTGTCGGCAGGATGATTTTTCGAATTCGACGAG
TCGGAATATCTCAAGGGCTTGCACGGGGCCGAAGGCCCCGTGCAAGCGGG
ATGGGACGGGTTTGCTCGCCGCAGGCGGGAAAATTTTTAGGTCCCATTGT
CGATGGTATGGGATCCCATGGTCAGGCATTTGCCATCCCACTTTAACGGG
ATGGGACGGTCCCACTTGCGTTGTATGTGGGATGGGAATGGGACGGGAAG
CTGGGATGCTTAGCGAGAATGGGCATCACATGGGAATCCAGAAAAATCCA
TTTGGGACGGGACGGGACTATTGTGTCATAGGGGGGTGGCGGGACACTGC
TGGGTTATGTGGGATTCCAACGTGGGAATCCAGTGTGGGACCACACCGGA
CAGACAACATAGAAAATATATATATTATTCATACATTCGCCCCGTGCTGC
ACTGCTTGCCCCGTGCAAGCCATGGTTTGAAAACCAACCAGCTCCGAACG
AAAAAGCAGATATCGTGTTTGTAGCAGGTGTGTCAACTGAGTTTCAGATG
AGTGCACGAATGCACCTTTGATGGCTCCCCAACCGAAGTAATCGCCACCG
AGGGAGTAGACGACAGACGAAGAGAAGAATCAAAAAGAATAACGCAAACC
TAGATTGCAAATAGACATGAACGAAGTCTCGCTCCTACAAAACTGCATCA
GGGGTAACACCCGCGCCACCTGCCGCAGCGTTCTTAGCGTTAGCTGCTGC
TTCTTTCTGCGCCTTCCGCTCAGCCTGCAAGGCATCCCAATCCCTCAACG
CCTTCCCTAGCCCGGGGATAAGGTGCTTGTTAAGCCTAAGAAAAATAGTC
TTCTCAACCTTGGCGGGGGAAGTGTTCGCACGTAGGTCGCTAACGATCAA
CTTGAGGGCGGAAAAATTCCTTTCCGCTTGGCAACTGGTTGCATCAACGC
CTAGGTGCAACCGCGCTATCAAACCGACTGGATGGCTCTGTTGGCTGTGA
CACAGGCTGGGCAGCGCCGCCGCCGGTAGGGTCCGCCATAGAGTGTGTGT
TCGTGGTACTACCACGAACGTGGTACCGTGCGTCGCCGCAACAAAAGCGG
ATGAAGATTCGAAAAAGGAAAAAGGTTCGAAAAAGGTTCGAACGTCGCAA
TTCGAGATTCTTCAATAGAACTATTTCGAAATAAAAATATTTTAGATTTT
ACAATTGATTCTTTATTCTTTGTTGGGTGTGTGTGTGTGTCTCCTGCGGG
ACATCGTAGAGCATCTCGGACGGGAAGTCTTGAGCCCACAGTACACATGG
GACGGGAGTAGCTCCGTTCACAACGGGCTTGGGACGGGACTGGCTGTGCT
AGTGGTGGGACGGGACGTAGGTGGGACGGGAGCGAAATTATGTAGGTAAT
GTGGGAGCAAGTGGGGCAGAAACTCACGGTGGGATGGTGCCGGGGTGGGA
CGGGCCGCACGTATTTCACTGTGGGATGGGACGTCCCGTCCCATCCCGTC
CCCTTTTCAACGGGACTCCCGTCCCATTGTGTCCCGTGCAAGCCCTTGGA
ATATCTAGGCTTGAACTTCTCCACTGCTGCTGTGTTTGTTTTCATCCCAT
GTTCTCTGGCACACTAGTCTGCACCCTGCGGTTCAAACCACAGGCTAGGC
CCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCT
CACCTTCCTTCTGCGGTACATGCGTGGGATTTTTTTCTCGCGAGCAGGGA
TCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTACATGCAG
CCTCTTTCAAAGTAGCAAAGGAACACATTCACCGGGAACCGGACCCCCGT
TCCTCTGCATTTAGTGGCTAACGAGGGGGCCACTAGTCCACCGGGGCGAC
CATACACTCTTTTGTCTCTGACTTTGTTTGGGTGACCATCTATTATACAT
TACCACAAGTATTTATTTATATTCCTCCCGTGATAACGACATTTCAAAGT
ATCCTTACTTGTTACACTACAGTAAAGGAATCGCCGGGGTGAGGTGAAGA
GCTCGTACAAGCTTAGCCCCGAGGCTAAGAAGCCCGCCCCCAAGCCCAAG
AAGAAGGTCGTCAAGAAGAAGGTCGTCAAGAAGAAGGTCGTCAAGAAGAA
AGTGGTCAAGAAGGTGGCCAAGAAGCCCGCTGTCAAGAAGACCGTCGCCA
AGAAGAAGCCCGCTGTCAAGAAGACCGTCGCCAAGAAGACTACCGGCGTC
AAGAAGACCGTCACCAAGAAGAAGCCCGCCGCCGGCGCCAAGAAGCCCAC
CACGAAAAAGGCTACCCCCAAGAAGAAGCCCGCCCCCCAAAAGGCCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:84221..87419-

>mRNA_P-littoralis_Contig64.13.1 ID=mRNA_P-littoralis_Contig64.13.1|Name=mRNA_P-littoralis_Contig64.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig64:84221..87419- (Pylaiella littoralis U1_48)
ATGGCGTCCGCGAAGACCACGTACAATACGATGGTATTCGATGCCATCAA
GAGCTTGAAGGAGAGGAACGGGTCGTCCATCCAGGCCATCAAGAAGAGCA
TCACTGCCACTTACCCGGCCCTCAACTTCACGCCGCACCAGATGCGCAGC
GCTCTCAAGAAAGGAACCGAATCCGGCAAGTTCATCAAGGTGAAGAGCTC
GTACAAGCTTAGCCCCGAGGCTAAGAAGCCCGCCCCCAAGCCCAAGAAGA
AGGTCGTCAAGAAGAAGGTCGTCAAGAAGAAGGTCGTCAAGAAGAAAGTG
GTCAAGAAGGTGGCCAAGAAGCCCGCTGTCAAGAAGACCGTCGCCAAGAA
GAAGCCCGCTGTCAAGAAGACCGTCGCCAAGAAGACTACCGGCGTCAAGA
AGACCGTCACCAAGAAGAAGCCCGCCGCCGGCGCCAAGAAGCCCACCACG
AAAAAGGCTACCCCCAAGAAGAAGCCCGCCCCCCAAAAGGCCTAA
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