mRNA_P-littoralis_Contig64.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.5.1
Unique NamemRNA_P-littoralis_Contig64.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.790e-37
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:   43 MTSAKTTYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPK 282
            M S K TYN MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKG ESGKFIK+K+SYKLS EAKKPAPK
Sbjct:    1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.150e-35
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:   49 SAKTTYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAP 279
            +AK TYN MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMR ALKKG ESGKFIK+K+SYKLSPEAKKPAP
Sbjct:   96 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
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BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.470e-34
Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1 
Query:   46 TSAKTTYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 276
            T+AK TY+ MVFDAIK+LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA
Sbjct:    3 TTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.560e-33
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   73 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPK 282
            MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKG E+GKFIKVKSSYKLS EAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 9.880e-33
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   73 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPK 282
            MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKG ESGKF+K+K+SYKLS EAKKPAPK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
[Close]
BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.650e-31
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:   73 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 276
            MVFDAIK+LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
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BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.610e-25
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:   73 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSP 258
            MVFDAIK+LKERNGSSIQA+KKSITATYPAL+FTPHQMRSALKKG E+GKFIKV+ +  L+P
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLAP 62
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BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 5.330e-24
Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:   61 TYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 273
            TY+ M   AI +LKERNGSS+ AIKK I ATYP LNF PHQ+R ALKKGTE+G FIKVK+SYK+SPEAKKP
Sbjct:    3 TYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
[Close]
BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.150e-22
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:   61 TYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPAPKP 285
            TY+ M  +A+K+LKERNGSS+ AIKK ITA+YP+L FT H MRSALKKG ESGKFIKVK+SYKLS   ++PA KP
Sbjct:    3 TYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAKP 77
[Close]
BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.140e-19
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   61 TYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGTESGKFIKVKSSYKLS 255
            TY+ M  +A+K+LKERNGSS+ AIKK ITA+YP+L FT H +RSALKKG ESGKFIKVK+SYKLS
Sbjct:    3 TYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLS 67
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI1.790e-3787.50Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE2.150e-3588.31H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI3.470e-3484.42H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI1.560e-3394.29H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE9.880e-3390.00H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
A0A6H5JHR9_9PHAE7.650e-3188.24H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE2.610e-2582.26H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI5.330e-2473.24H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI4.150e-2269.33H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE1.140e-1972.31H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:33002..35869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWJ4
Preferred nameH1
PFAMsLinker_histone
Model size617
Max annot lvl2759|Eukaryota
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
Exons3
Evalue4.77e-39
EggNOG OGs2CYYI@1|root,2S79K@2759|Eukaryota
DescriptionDomain in histone families 1 and 5
Cds size492
COG categoryB
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791330.276707-UTR-P-littoralis_Contig64:33001..330841680791330.276707-UTR-P-littoralis_Contig64:33001..33084Pylaiella littoralis U1_48UTRP-littoralis_Contig64 33002..33084 -
1680791330.3271627-UTR-P-littoralis_Contig64:35827..358691680791330.3271627-UTR-P-littoralis_Contig64:35827..35869Pylaiella littoralis U1_48UTRP-littoralis_Contig64 35828..35869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791330.2889984-CDS-P-littoralis_Contig64:33084..333871680791330.2889984-CDS-P-littoralis_Contig64:33084..33387Pylaiella littoralis U1_48CDSP-littoralis_Contig64 33085..33387 -
1680791330.3031335-CDS-P-littoralis_Contig64:35280..354391680791330.3031335-CDS-P-littoralis_Contig64:35280..35439Pylaiella littoralis U1_48CDSP-littoralis_Contig64 35281..35439 -
1680791330.3159897-CDS-P-littoralis_Contig64:35797..358271680791330.3159897-CDS-P-littoralis_Contig64:35797..35827Pylaiella littoralis U1_48CDSP-littoralis_Contig64 35798..35827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.5.1prot_P-littoralis_Contig64.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 33085..35827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.5.1

>prot_P-littoralis_Contig64.5.1 ID=prot_P-littoralis_Contig64.5.1|Name=mRNA_P-littoralis_Contig64.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
MTSAKTTYNTMVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRS
ALKKGTESGKFIKVKSSYKLSPEAKKPAPKPKKKVVKKKVVKKKVVKKKV
VKKVAKKPAVKKTVAKKPAVKKTVAKKTTGVKKTVTKKKPAAGAKKPTTK
KATPKKKPAPQKA*
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mRNA from alignment at P-littoralis_Contig64:33002..35869-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.5.1 ID=mRNA_P-littoralis_Contig64.5.1|Name=mRNA_P-littoralis_Contig64.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2868bp|location=Sequence derived from alignment at P-littoralis_Contig64:33002..35869- (Pylaiella littoralis U1_48)
CCACACAGAGCACCAACGCACCACTGACATCCCGCAGCAACCATGACGTC
CGCGAAGACCACGTACAATACGGTAAGCGAGATGTGCCCGTCGCGTGTCA
GCTGGACGCCAGTCTCAGACTTTCGGGGGTGTTTTGAGGTGCCCTTTGAA
TACCAGTACTTCATCTGACTCTTGACACGCGAAGATATTCTGGATGGTCG
AGTAGAGGATGCAAACTCGAGTGCTTGAGAGTCGTACAGCAGTGTGTTGT
ACATCGCAGTAAACATGGACTAGAACAGCGTGTTTCGTGTCCTCCGGTTC
TTCTAACCTCGGTTTAAGAGGATACCCAGCTGCGACAAGAAACGAAACAT
CTATCCTGCCCCCGTTCATTTTTTGTTTTTTCGCTCTTTCCCTTGTCTGG
ATTCGTGCCCCTTGCTTTTTATTTTTCAAGATGGTATTCGATGCCATCAA
GAGCTTGAAGGAGAGGAACGGGTCCTCCATCCAGGCCATCAAGAAAAGCA
TCACCGCCACTTACCCGGCCCTCAACTTCACGCCGCACCAGATGCGCAGC
GCTCTCAAGAAAGGAACCGAATCCGGCAAGTTCATCAAGGTGAGAGATGC
TCCGGCTTTACTTGCATGTGAGCCGTTGCACGAACGATATGCCCGTGGTG
ATATGAGGTTTGAAGTTTTGAGCCGTTCGTTCGCCAGCCGGGCCGGAGTG
GCACACACGTGATTTTGTTGTGGTCGACACCTTTCAGCGCAACAGACAGC
ATGTTTAGGTTTGTGTATGTACTGTGTACAGTACGTTCGAGCAGTAGAAG
GCCTGTTTGAACGGAAATGGTAGCGACCGGATTGGAATCAAGGCGGAATT
TAGTCGGCCCTACCTAGCTTCTACCAGTCTGTACCGGAATATAGTTCACT
TTTGAATAACAACGTGAATATCTTGGGGTACGATTTTTTTAATGCGGGTT
TTTGAACTGTGTTATGGTGAGCTGGCCCTGAAAACTGTAAAACGAGTTTC
CGAATGACCAAATAAAACGTTTCGTATCATATCAAGCAGGAAGGTCACTC
GGAGATCTTCGGGCATTACCCACCGGTTGAGGCGGTTGAAACTTTTTTTT
TTTTACATCGGATTTGGGACTCTCCCGGCTCCAAAAAGCCATTAAAAAAA
GTGGTCACGAAAAAACTGCAACCACCACCAGCTTTCTTCAATTATCGATT
TTTTTCAATATTTTTTTGCTAGCACGAGTTGTAGGCAGCCAAGCGACTTT
TTAGAGCGCGGGGAACGCCCGTGCTGTTCTCGCGATTGCGCTCGCTCGTA
AAATACCAAAACCGAAAACAATATTTTTGTTTTCGAAAAAAAAATCCAAA
GTTCGGATATGAAAAAAATATATATTGTTTTCGATTTTATTTTTTTACGA
GCGCAATCGCGAGAACAGCACGGGCGTTCCCCGCGCTCTCAAAAGTCACT
TGGCTGCCTACATCGCGCTAGCAAAAAAATATCGAAAAAAATCGATAATT
GAAGAAAGCTGGTGGTGGTTGCAGCTTTTTCGTGACCACTTTTTCTAATG
GCTTTTTGGAACGGGGAGAGAGTCCCAAATCCGATGTAAAAAAGAGAAGA
AAAAAAAGGGTTTTAACCGCCTCAACCGGTGGGCAATGCCCGACGATCTC
CGAGTGACCTTCCTTCGTGACACGATACGAAACATTCTATATGGTCATTC
AGAAATTCGTTCTGCAGTTTTCAGGGGCAGCTCACCGTGAACAGTGCAAA
AACCCGCCTCAAAAAAATCGTACCCTACCCCAAGATATTCACGTTATCTA
AAAGTGAACTATATTCCGGTAGAGACTGGTACATGATGCTGTACGGGAAG
GGGGGCAAGCGTCGTTTTCTTTCACCCTGTCGGGAGGATGATTTTTGGAA
TTCGACGAGTCGGAATATCTAGACTGAACTGCTCCACTGCTGCTGTGTAT
CCTTACTTGTTACGCTAAAGGAATCGCCTGGGTGGGTGGTGACCAAAACT
ACAGGGTTGTAGAAATGACCGCATGTTCTTTACAGCAAAACGACAACAGC
AGTAGTACCTTTCCTTTTCAGAAACCGACATGATACGCATACGCACGCAA
CTCTGCTGCCGCAGTATACTCTAGATGCCCTTTACTTCGAAGTACATAAC
AAGCAACATGCCGCAAAACCACTACTACTTGATGCAGTAGTACTCCCAAA
TAAGCCCTCAGACAGCTTTGATAAATCGTGAGTTTGAATCCTGTTGTCTG
TGTATGTATGATAGCTGGAGCTATTTAAACCTTCGAGTATAACAGGCGCT
ACGTCACTCTCCCTGCAGACAGCACAAAGGCGGTGACATGGCAAACGCAA
ACCAGCATGAGGAGCTATCATCTATGTTCACCATTCACTCAACTCTCTGC
GTTTTTCGTACTGTATGATGAGAGCGAATTATAATCGAATTCTGATTCGG
TCGCCTCAACGGCCTTCGATCGATACGAACAGGTGAAGAGCTCGTACAAG
CTCAGCCCCGAGGCCAAGAAGCCCGCCCCCAAGCCCAAGAAGAAGGTCGT
CAAGAAGAAGGTCGTCAAAAAGAAGGTCGTCAAGAAGAAAGTGGTCAAGA
AGGTGGCCAAGAAGCCCGCTGTCAAGAAGACCGTCGCCAAGAAGCCCGCT
GTCAAGAAGACCGTCGCCAAGAAGACTACCGGCGTCAAGAAGACCGTCAC
CAAGAAGAAGCCCGCCGCCGGCGCCAAGAAGCCCACCACGAAAAAGGCTA
CCCCCAAGAAGAAGCCCGCCCCCCAAAAGGCCTAAGCAGCTTGGCCGCCC
GCTACTGCTGCATCATACCCCTCCCCACGCTCTTCGGCAGTGTACCGGGT
TCAACTTGCCAACAAACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:33002..35869-

>mRNA_P-littoralis_Contig64.5.1 ID=mRNA_P-littoralis_Contig64.5.1|Name=mRNA_P-littoralis_Contig64.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig64:33002..35869- (Pylaiella littoralis U1_48)
ATGACGTCCGCGAAGACCACGTACAATACGATGGTATTCGATGCCATCAA
GAGCTTGAAGGAGAGGAACGGGTCCTCCATCCAGGCCATCAAGAAAAGCA
TCACCGCCACTTACCCGGCCCTCAACTTCACGCCGCACCAGATGCGCAGC
GCTCTCAAGAAAGGAACCGAATCCGGCAAGTTCATCAAGGTGAAGAGCTC
GTACAAGCTCAGCCCCGAGGCCAAGAAGCCCGCCCCCAAGCCCAAGAAGA
AGGTCGTCAAGAAGAAGGTCGTCAAAAAGAAGGTCGTCAAGAAGAAAGTG
GTCAAGAAGGTGGCCAAGAAGCCCGCTGTCAAGAAGACCGTCGCCAAGAA
GCCCGCTGTCAAGAAGACCGTCGCCAAGAAGACTACCGGCGTCAAGAAGA
CCGTCACCAAGAAGAAGCCCGCCGCCGGCGCCAAGAAGCCCACCACGAAA
AAGGCTACCCCCAAGAAGAAGCCCGCCCCCCAAAAGGCCTAA
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