mRNA_P-littoralis_Contig64.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.4.1
Unique NamemRNA_P-littoralis_Contig64.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: A0A1J3ENA7_NOCCA (Histone H4 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ENA7_NOCCA)

HSP 1 Score: 205 bits (521), Expect = 5.000e-66
Identity = 108/117 (92.31%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   46 NLFSSLKFKTPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            NL  S KFK P+  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   15 NLSFSRKFKFPEK-MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 130
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 204 bits (520), Expect = 6.030e-66
Identity = 109/118 (92.37%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:   43 HNLFSSLKFKTPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            H   SS K   P +NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   11 HKFVSSNK---PTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: A0A2J6LJW1_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6LJW1_LACSA)

HSP 1 Score: 204 bits (520), Expect = 1.090e-65
Identity = 106/124 (85.48%), Postives = 114/124 (91.94%), Query Frame = 1 
Query:   25 RPPSHNHNLFSSLKFKTPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            +PP+  H+ F    F++ +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   20 KPPNWRHHHFHLHFFESTKFQMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 143
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: A0A453N2X0_AEGTS (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A453N2X0_AEGTS)

HSP 1 Score: 202 bits (514), Expect = 3.820e-65
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:   61 LKFKTPQAN--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            L F+TP A   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    4 LHFQTPSAPPIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 117
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: UPI001EEB9003 (histone H4-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEB9003)

HSP 1 Score: 202 bits (515), Expect = 5.880e-65
Identity = 105/121 (86.78%), Postives = 114/121 (94.21%), Query Frame = 1 
Query:   40 NHNLFSSLKFKTPQA--NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            NH++FS + ++T +    M+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 NHSVFSLVVYQTSETYLKMTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 141
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: A0A8J1ITQ4_XENTR (Histone H4 n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J1ITQ4_XENTR)

HSP 1 Score: 201 bits (511), Expect = 1.170e-64
Identity = 103/112 (91.96%), Postives = 106/112 (94.64%), Query Frame = 1 
Query:   61 LKFKTPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            + FK     MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    8 IAFKEASVRMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 119
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: A0A1D6IAU4_MAIZE (Histone H4 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6IAU4_MAIZE)

HSP 1 Score: 201 bits (512), Expect = 1.480e-64
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:   70 KTPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            + P A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   29 RQPAAEMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 137
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: UPI000A35805F (histone H4 n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=UPI000A35805F)

HSP 1 Score: 201 bits (510), Expect = 1.560e-64
Identity = 103/110 (93.64%), Postives = 107/110 (97.27%), Query Frame = 1 
Query:   67 FKTPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            F   +A+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    8 FSLARASMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 117
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BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: A0A452ZB17_AEGTS (Histone H4 n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZB17_AEGTS)

HSP 1 Score: 201 bits (510), Expect = 2.080e-64
Identity = 106/123 (86.18%), Postives = 111/123 (90.24%), Query Frame = 1 
Query:   28 PPSHNHNLFSSLKFKTPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            PP    ++ SS   +   A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    4 PPLLQPHISSSAARRGSSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 126
[Close]
BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Match: A0A453FVP7_AEGTS (Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453FVP7_AEGTS)

HSP 1 Score: 201 bits (510), Expect = 2.220e-64
Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1 
Query:   61 LKFKTPQANMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 396
            L   + QA MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   17 LSSYSEQAAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3ENA7_NOCCA5.000e-6692.31Histone H4 (Fragment) n=2 Tax=Noccaea caerulescens... [more]
A0A3L6V663_9STRA6.030e-6692.37Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A2J6LJW1_LACSA1.090e-6585.48Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
A0A453N2X0_AEGTS3.820e-6592.98Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]
UPI001EEB90035.880e-6586.78histone H4-like n=1 Tax=Daphnia pulicaria TaxID=35... [more]
A0A8J1ITQ4_XENTR1.170e-6491.96Histone H4 n=1 Tax=Xenopus tropicalis TaxID=8364 R... [more]
A0A1D6IAU4_MAIZE1.480e-6494.50Histone H4 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D... [more]
UPI000A35805F1.560e-6493.64histone H4 n=1 Tax=Heterocephalus glaber TaxID=101... [more]
A0A452ZB17_AEGTS2.080e-6486.18Histone H4 n=2 Tax=Aegilops tauschii subsp. strang... [more]
A0A453FVP7_AEGTS2.220e-6492.86Histone H4 n=2 Tax=Triticinae TaxID=1648030 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:25347..25745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog31033.ENSTRUP00000039718
PFAMsCENP-T_C
Model size399
Max annot lvl33208|Metazoa
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045087,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050829,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051707,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0098542,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue3.74e-64
EggNOG OGsCOG2036@1|root,KOG1744@1|root,KOG1744@2759|Eukaryota,KOG3467@2759|Eukaryota,3A1HI@33154|Opisthokonta,3BQAA@33208|Metazoa,3D789@33213|Bilateria,48EQW@7711|Chordata,49BSS@7742|Vertebrata
DescriptionCore component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
Cds size399
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791330.2411282-CDS-P-littoralis_Contig64:25346..257451680791330.2411282-CDS-P-littoralis_Contig64:25346..25745Pylaiella littoralis U1_48CDSP-littoralis_Contig64 25347..25745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.4.1prot_P-littoralis_Contig64.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 25347..25745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.4.1

>prot_P-littoralis_Contig64.4.1 ID=prot_P-littoralis_Contig64.4.1|Name=mRNA_P-littoralis_Contig64.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
SSPRGACHRPPSHNHNLFSSLKFKTPQANMSGRGKGGKGLGKGGAKRHRK
VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSV
TYTEHARRKTVTAMDVVYALKRQGRTLYGFGG*
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mRNA from alignment at P-littoralis_Contig64:25347..25745-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.4.1 ID=mRNA_P-littoralis_Contig64.4.1|Name=mRNA_P-littoralis_Contig64.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig64:25347..25745- (Pylaiella littoralis U1_48)
TCATCTCCCCGCGGTGCGTGTCATCGCCCCCCCAGTCACAATCATAACCT
CTTCTCCTCTTTGAAGTTCAAAACACCTCAAGCAAACATGTCTGGACGCG
GAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGCGCCAAGCGCCACCGGAAG
GTACTCCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCAGGCGTCT
GGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACTCATCTACGAGGAGA
CCCGCGGCGTGCTGAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTC
ACCTACACCGAGCACGCCCGCCGGAAGACCGTGACCGCCATGGACGTGGT
GTACGCCCTCAAGCGCCAGGGTCGCACCCTCTACGGCTTCGGCGGCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:25347..25745-

>mRNA_P-littoralis_Contig64.4.1 ID=mRNA_P-littoralis_Contig64.4.1|Name=mRNA_P-littoralis_Contig64.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig64:25347..25745- (Pylaiella littoralis U1_48)
TCATCTCCCCGCGGTGCGTGTCATCGCCCCCCCAGTCACAATCATAACCT
CTTCTCCTCTTTGAAGTTCAAAACACCTCAAGCAAACATGTCTGGACGCG
GAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGCGCCAAGCGCCACCGGAAG
GTACTCCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCAGGCGTCT
GGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACTCATCTACGAGGAGA
CCCGCGGCGTGCTGAAGGTCTTCCTCGAGAACGTCATCCGCGACTCGGTC
ACCTACACCGAGCACGCCCGCCGGAAGACCGTGACCGCCATGGACGTGGT
GTACGCCCTCAAGCGCCAGGGTCGCACCCTCTACGGCTTCGGCGGCTAA
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