mRNA_P-littoralis_Contig64.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig64.3.1
Unique NamemRNA_P-littoralis_Contig64.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 2.470e-78
Identity = 116/151 (76.82%), Postives = 134/151 (88.74%), Query Frame = 3 
Query:   12 FANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            +A+AD+ASKA DRRSVSGG+V CGG  VSWFSRT+KCVTLSTTEAEYVAL +V KE+LFLRQ+WRFMLP+VGMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVRHHF RELV R ++S+ HVPS +Q  DFLTKSLP + FE HR FVM+L
Sbjct:   60 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 210
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BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 3.710e-78
Identity = 120/152 (78.95%), Postives = 136/152 (89.47%), Query Frame = 3 
Query:    9 VFANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            VF +ADYASKATDRRSVSGGLVMCGG  V+WFSRT+KCVTLSTTEAEYVA+A+V KEVLFLRQVWRFMLP+ GMPCIPVFEDN+GAIQ+A NPITNSNSKHIDVRHHF RELV R ++SIT+VP+ FQH DFLTK++  E+F  HR FVM+L
Sbjct:  169 VFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVMNL 320
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BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 9.750e-78
Identity = 120/152 (78.95%), Postives = 135/152 (88.82%), Query Frame = 3 
Query:    9 VFANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            VF +ADYASKATDRRSVSGGLVMCGG  V+WFSRT+KCVTLSTTEAEYVA+A+V KEVLFLRQVWRFMLP+  MPCIPVFEDN+GAIQ+  NPITNSNSKHIDVRHHF RELV R ++SITHVP+QFQH DFLTK++  E+F  HR FVM+L
Sbjct:  224 VFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVMNL 375
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BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 7.970e-77
Identity = 117/152 (76.97%), Postives = 131/152 (86.18%), Query Frame = 3 
Query:    9 VFANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            VF +ADYASKA DRRSVSGGLVMCGG  V+WFSRT+KCVTLSTTEAEYVA+A+V KEVLFLRQVWRFMLP+ GMPCIPVFEDN   IQ+A NPITNSNSKHIDVRHHF RELV R ++SITHV S+FQH D LTK++  E+F  HR FVM+L
Sbjct:   17 VFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
[Close]
BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 8.030e-77
Identity = 120/152 (78.95%), Postives = 135/152 (88.82%), Query Frame = 3 
Query:    9 VFANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            VF +ADYASKATDRRSVSGGLVMCGG  V+WFSRT+KCVTLSTTEAEYVA+A+V KEVLFLRQVWRFMLP+ GMPCIPVFEDN+GAIQ+A NPITNSNSKHIDVRHHF RELV R ++SITHVP+ FQH DFLTK++  E+   HR FVM+L
Sbjct:  286 VFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVMNL 437
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BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.750e-76
Identity = 115/151 (76.16%), Postives = 133/151 (88.08%), Query Frame = 3 
Query:   12 FANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            +A+AD+ASKA DRRSVSGG+V CGG  VSWFSRT+KCVTLSTTEAEYVAL +V KE+LFLRQ+WRFMLP+VGMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVRHHF RELV R ++S+ HVPS +Q  DFLTKSL  + FE HR FVM+L
Sbjct:  105 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 255
[Close]
BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.900e-76
Identity = 115/151 (76.16%), Postives = 132/151 (87.42%), Query Frame = 3 
Query:   12 FANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            +A+AD+ASKA DRRSVSGG+V CGG  VSWFSRT+KCVTLSTTEAEYVAL EV K +LFLRQ+WRFMLP+VGMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVRHHF RELV R ++S+ HVPS +Q  DFLTKSL  + FE HR FVM+L
Sbjct:   65 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVMNL 215
[Close]
BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 3.190e-76
Identity = 120/152 (78.95%), Postives = 134/152 (88.16%), Query Frame = 3 
Query:    9 VFANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            VF +ADYASKA DRRSVSGGLVMCGG  +SWFSRT+KCVTLSTTEAEYV+LA+V KEVLFLRQVWRFMLPE GMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVRHHF RELV R ++SI HV S +QH DFLTK+L    FEFHR +VMS+
Sbjct:  286 VFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVMSM 437
[Close]
BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 3.870e-76
Identity = 112/151 (74.17%), Postives = 135/151 (89.40%), Query Frame = 3 
Query:   12 FANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            +A+AD+ASKA +RRSVSGG+V CGG  VSWFSRT+KCVTLSTTEAEYVAL +V KE++FLRQ+WRFMLP+VGMPCIP+FEDN+GAIQLA+NPI+NSNSKHIDVRHHF RELV R ++S+ HVPS +Q  DFLTKSL  ++FE HR+FVM+L
Sbjct:   76 YADADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFVMNL 226
[Close]
BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 4.800e-75
Identity = 116/151 (76.82%), Postives = 134/151 (88.74%), Query Frame = 3 
Query:   12 FANADYASKATDRRSVSGGLVMCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEVGMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITHVPSQFQHTDFLTKSLPVETFEFHRKFVMSL 464
            +A+AD+ASKA DRRSVSGG+V CGG  VSWFSRT+KCVTLSTTEAEYVAL +V KE+LFLRQ+WRFMLP+VGMPCIPVFEDN+GAIQLA+NPI+NSNSKHIDVRHHF RELV R ++S+ HVPS +Q  DFLTKSLP + FE HR FVM+L
Sbjct:  311 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVMNL 461
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig64.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUW6_9PHAE2.470e-7876.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE3.710e-7878.95Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE9.750e-7878.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTT9_9PHAE7.970e-7776.97Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE8.030e-7778.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWJ4_9PHAE1.750e-7676.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE1.900e-7676.16Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE3.190e-7678.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIJ7_9PHAE3.870e-7674.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG2_9PHAE4.800e-7576.82Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig64contigP-littoralis_Contig64:18696..19645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7070.TC002223-PA
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size950
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.55e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta
DescriptionEncoded by
Cds size393
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791330.1778321-UTR-P-littoralis_Contig64:18695..187691680791330.1778321-UTR-P-littoralis_Contig64:18695..18769Pylaiella littoralis U1_48UTRP-littoralis_Contig64 18696..18769 +
1680791330.2079308-UTR-P-littoralis_Contig64:19162..196451680791330.2079308-UTR-P-littoralis_Contig64:19162..19645Pylaiella littoralis U1_48UTRP-littoralis_Contig64 19163..19645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791330.193779-CDS-P-littoralis_Contig64:18769..191621680791330.193779-CDS-P-littoralis_Contig64:18769..19162Pylaiella littoralis U1_48CDSP-littoralis_Contig64 18770..19162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig64.3.1prot_P-littoralis_Contig64.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig64 18770..19162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig64.3.1

>prot_P-littoralis_Contig64.3.1 ID=prot_P-littoralis_Contig64.3.1|Name=mRNA_P-littoralis_Contig64.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MCGGERVSWFSRTKKCVTLSTTEAEYVALAEVTKEVLFLRQVWRFMLPEV
GMPCIPVFEDNEGAIQLAKNPITNSNSKHIDVRHHFRRELVARGKLSITH
VPSQFQHTDFLTKSLPVETFEFHRKFVMSL*
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mRNA from alignment at P-littoralis_Contig64:18696..19645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig64.3.1 ID=mRNA_P-littoralis_Contig64.3.1|Name=mRNA_P-littoralis_Contig64.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=950bp|location=Sequence derived from alignment at P-littoralis_Contig64:18696..19645+ (Pylaiella littoralis U1_48)
GTTTGTAAGTGTTCGCGAATGCCGACTATGCCAGTAAGGCGACAGACAGG
AGGTCGGTATCAGGGGGGCTGGTCATGTGTGGAGGTGAACGTGTGTCTTG
GTTTTCACGAACTAAAAAGTGTGTGACACTTTCGACGACAGAGGCAGAGT
ATGTTGCGCTTGCTGAAGTCACCAAGGAAGTTTTGTTTCTGAGGCAGGTT
TGGCGTTTCATGTTGCCAGAGGTTGGAATGCCGTGCATACCTGTTTTTGA
GGACAATGAGGGAGCTATTCAACTTGCCAAGAACCCCATCACCAACTCAA
ACTCGAAGCACATCGACGTGCGACATCATTTTCGTCGGGAACTTGTAGCA
AGGGGGAAGCTTTCCATTACACATGTGCCGTCTCAGTTTCAGCATACAGA
CTTTCTCACGAAATCATTGCCGGTGGAAACTTTCGAATTTCACCGCAAAT
TTGTGATGAGCTTGTGACGGTGCTTGTTTTATTTGTTCGATTTTTTGTCT
CCTGCACGAGTTTTGGTTCTTGCTTTACTTGTGTTGGACGGCGTGATCAC
TGCTTTTGTCATGATTGCAGTGTTCGATTGTTTGTTTGTATTTCACTTCG
TTTTGATTTGTTTCCAGATGGAGTACTTGTGTTGGAAATTGCATGATGAT
TGAATTTCAAATTCAGTGCTTCGTGCGTTGGAATTTTTATACTTTGACTT
GTTTGGGTTCTTGGGATGAACTATTCTGACTTGGCCGTGAGCACGGGGGC
TGATCGGATTACTCGTGCGGCAAGTCACATAGACGTAATCTCCGGAGATT
TTGATGGGTTTCATATATGGGTAGGAGGCGTTACGTTGCGGATGAATTAT
CGCGTGCAGAATTGTATGACGTGATGATCCGAGAGAGGCTGTGGCATGTG
CCGTCTCTCTCACTCGATTGTATAATACGACACCAAGACGGTCTATCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig64:18696..19645+

>mRNA_P-littoralis_Contig64.3.1 ID=mRNA_P-littoralis_Contig64.3.1|Name=mRNA_P-littoralis_Contig64.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig64:18696..19645+ (Pylaiella littoralis U1_48)
ATGTGTGGAGGTGAACGTGTGTCTTGGTTTTCACGAACTAAAAAGTGTGT
GACACTTTCGACGACAGAGGCAGAGTATGTTGCGCTTGCTGAAGTCACCA
AGGAAGTTTTGTTTCTGAGGCAGGTTTGGCGTTTCATGTTGCCAGAGGTT
GGAATGCCGTGCATACCTGTTTTTGAGGACAATGAGGGAGCTATTCAACT
TGCCAAGAACCCCATCACCAACTCAAACTCGAAGCACATCGACGTGCGAC
ATCATTTTCGTCGGGAACTTGTAGCAAGGGGGAAGCTTTCCATTACACAT
GTGCCGTCTCAGTTTCAGCATACAGACTTTCTCACGAAATCATTGCCGGT
GGAAACTTTCGAATTTCACCGCAAATTTGTGATGAGCTTGTGA
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