mRNA_P-littoralis_Contig639.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig639.4.1
Unique NamemRNA_P-littoralis_Contig639.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig639.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig639contigP-littoralis_Contig639:9764..10217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size454
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.8827455-UTR-P-littoralis_Contig639:9763..98451680791328.8827455-UTR-P-littoralis_Contig639:9763..9845Pylaiella littoralis U1_48UTRP-littoralis_Contig639 9764..9845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.8976722-CDS-P-littoralis_Contig639:9845..102171680791328.8976722-CDS-P-littoralis_Contig639:9845..10217Pylaiella littoralis U1_48CDSP-littoralis_Contig639 9846..10217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig639.4.1prot_P-littoralis_Contig639.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig639 9846..10217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig639.4.1

>prot_P-littoralis_Contig639.4.1 ID=prot_P-littoralis_Contig639.4.1|Name=mRNA_P-littoralis_Contig639.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MSTSPESEVHHREPVGYTKLIDVKHYRRMNPSRSINKGVFSMVRLVQRAR
ARTTYVGVVLIPCYTVAACFRYFSHEACSIPKKIVEGHFPFHRRTQLSTS
THAHHASPTQQTVTNVNKRDPNI*
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mRNA from alignment at P-littoralis_Contig639:9764..10217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig639.4.1 ID=mRNA_P-littoralis_Contig639.4.1|Name=mRNA_P-littoralis_Contig639.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=454bp|location=Sequence derived from alignment at P-littoralis_Contig639:9764..10217+ (Pylaiella littoralis U1_48)
GAAAGCAGCGGCCTGCGGTGAGAAATGCTGCACTTTGGCTGTTTTTCAGT
AAGACCTACCGGTACTCAGCCGGAATAGACGTATGTCAACATCTCCTGAA
AGTGAGGTTCACCACCGTGAGCCCGTCGGGTATACAAAACTCATCGACGT
TAAACATTACCGCCGTATGAATCCTTCACGAAGCATCAACAAGGGCGTGT
TTTCAATGGTGAGGCTTGTTCAGAGAGCGCGAGCACGAACCACGTACGTA
GGCGTAGTATTGATTCCTTGTTACACTGTTGCTGCATGTTTCCGGTATTT
TTCACACGAAGCATGCTCCATACCAAAAAAAATAGTTGAAGGTCATTTTC
CCTTTCACAGACGCACCCAGCTTTCAACCAGCACACATGCACATCACGCC
AGTcCCACTCAACAAACCGTaacaAACGTAAATAAGAGGGACCCAAATAT
ATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig639:9764..10217+

>mRNA_P-littoralis_Contig639.4.1 ID=mRNA_P-littoralis_Contig639.4.1|Name=mRNA_P-littoralis_Contig639.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig639:9764..10217+ (Pylaiella littoralis U1_48)
ATGTCAACATCTCCTGAAAGTGAGGTTCACCACCGTGAGCCCGTCGGGTA
TACAAAACTCATCGACGTTAAACATTACCGCCGTATGAATCCTTCACGAA
GCATCAACAAGGGCGTGTTTTCAATGGTGAGGCTTGTTCAGAGAGCGCGA
GCACGAACCACGTACGTAGGCGTAGTATTGATTCCTTGTTACACTGTTGC
TGCATGTTTCCGGTATTTTTCACACGAAGCATGCTCCATACCAAAAAAAA
TAGTTGAAGGTCATTTTCCCTTTCACAGACGCACCCAGCTTTCAACCAGC
ACACATGCACATCACGCCAGTcCCACTCAACAAACCGTaacaAACGTAAA
TAAGAGGGACCCAAATATATAA
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