mRNA_P-littoralis_Contig638.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig638.22.1
Unique NamemRNA_P-littoralis_Contig638.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig638.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig638contigP-littoralis_Contig638:99873..100315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size334
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.4567704-CDS-P-littoralis_Contig638:99872..999541680791328.4567704-CDS-P-littoralis_Contig638:99872..99954Pylaiella littoralis U1_48CDSP-littoralis_Contig638 99873..99954 +
1680791328.4728198-CDS-P-littoralis_Contig638:100063..1002661680791328.4728198-CDS-P-littoralis_Contig638:100063..100266Pylaiella littoralis U1_48CDSP-littoralis_Contig638 100064..100266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.4875746-UTR-P-littoralis_Contig638:100266..1003151680791328.4875746-UTR-P-littoralis_Contig638:100266..100315Pylaiella littoralis U1_48UTRP-littoralis_Contig638 100267..100315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig638.22.1prot_P-littoralis_Contig638.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig638 99873..100266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig638.22.1

>prot_P-littoralis_Contig638.22.1 ID=prot_P-littoralis_Contig638.22.1|Name=mRNA_P-littoralis_Contig638.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=95bp
RPRAHTISNGPAPTPHNTPPIHGQTAPLEQERCQQEVKKQVESRRVKERD
LRRSAEALWEDEDLATQRCRLRSAVRRENLRLGHAAAVTTLAFM*
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mRNA from alignment at P-littoralis_Contig638:99873..100315+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig638.22.1 ID=mRNA_P-littoralis_Contig638.22.1|Name=mRNA_P-littoralis_Contig638.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=443bp|location=Sequence derived from alignment at P-littoralis_Contig638:99873..100315+ (Pylaiella littoralis U1_48)
CGGCCCAGAGCCCACACCATATCAAACGGCCCAGCGCCCACACCTCACAA
TACACCACCCATACACGGGCAAACTGCACCTCGCACCAAACATCCATTAC
ACTAGTGTACGCGATACGATACCTGTGCGAGAGTGTAACTACATATCGGG
ATCAGCGCCCCAGCGCGCACAAGACATTCAACGATAACAAGTAGAACAAG
AGCGATGTCAACAGGAAGTAAAAAAGCAAGTAGAAAGTAGAAGGGTGAAG
GAGAGAGATCTACGGAGAAGTGCGGAGGCACTATGGGAGGACGAAGATTT
GGCGACGCAGCGGTGCCGATTAAGATCTGCAGTCCGACGGGAGAACTTGC
GGCTGGGACATGCGGCAGCGGTCACAACTCTGGCATTCATGTGAGTCCCA
CGTCACCGTGGAAGCAGCAAGGTGGGAGGTGTGTTGGGTCATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig638:99873..100315+

>mRNA_P-littoralis_Contig638.22.1 ID=mRNA_P-littoralis_Contig638.22.1|Name=mRNA_P-littoralis_Contig638.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=285bp|location=Sequence derived from alignment at P-littoralis_Contig638:99873..100315+ (Pylaiella littoralis U1_48)
CGGCCCAGAGCCCACACCATATCAAACGGCCCAGCGCCCACACCTCACAA
TACACCACCCATACACGGGCAAACTGCACCTCTAGAACAAGAGCGATGTC
AACAGGAAGTAAAAAAGCAAGTAGAAAGTAGAAGGGTGAAGGAGAGAGAT
CTACGGAGAAGTGCGGAGGCACTATGGGAGGACGAAGATTTGGCGACGCA
GCGGTGCCGATTAAGATCTGCAGTCCGACGGGAGAACTTGCGGCTGGGAC
ATGCGGCAGCGGTCACAACTCTGGCATTCATGTGA
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