mRNA_P-littoralis_Contig637.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig637.42.1
Unique NamemRNA_P-littoralis_Contig637.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig637.42.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 8.230e-56
Identity = 106/152 (69.74%), Postives = 123/152 (80.92%), Query Frame = 3 
Query:  288 WREKDFLVDALLSIVGGSIEDGEGGRIDSGSGNGRVDVVGSGSIGEISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLGDFDEDFLGRPIDLEEVFSSSPKSNLADAHGSTRK*LSFGHSDVAGETADSAVGETKG 743
            WR+K+FLV+ALLS+ GGS EDGEGG +D GSGNG V+V G G  G+ISNV V++ S+ GGE LEW DA+PLE+A +SKLLQELA+  GEDDASLGDFDE+FL R ID +EVF SSPKSNLADA G TR  LSF  SDVAGETA S +GETKG
Sbjct:  339 WRKKEFLVNALLSVAGGSSEDGEGGLVDHGSGNGPVNVAGDGGDGKISNVWVNRVSATGGEGLEWIDAVPLEEAVMSKLLQELAVEDGEDDASLGDFDEEFLARSIDFDEVFPSSPKSNLADAQGPTRVELSFDQSDVAGETAASGMGETKG 490
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig637.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE8.230e-5669.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig637contigP-littoralis_Contig637:143243..145597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size943
Hectar predicted targeting categoryother localisation
Exons4
Cds size555
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig637.42.1prot_P-littoralis_Contig637.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig637 144317..145331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.082956-UTR-P-littoralis_Contig637:143242..1433241680791328.082956-UTR-P-littoralis_Contig637:143242..143324Pylaiella littoralis U1_48UTRP-littoralis_Contig637 143243..143324 +
1680791328.0990975-UTR-P-littoralis_Contig637:144276..1443161680791328.0990975-UTR-P-littoralis_Contig637:144276..144316Pylaiella littoralis U1_48UTRP-littoralis_Contig637 144277..144316 +
1680791328.143316-UTR-P-littoralis_Contig637:145331..1455971680791328.143316-UTR-P-littoralis_Contig637:145331..145597Pylaiella littoralis U1_48UTRP-littoralis_Contig637 145332..145597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791328.1134646-CDS-P-littoralis_Contig637:144316..1443811680791328.1134646-CDS-P-littoralis_Contig637:144316..144381Pylaiella littoralis U1_48CDSP-littoralis_Contig637 144317..144381 +
1680791328.1244152-CDS-P-littoralis_Contig637:144576..1446461680791328.1244152-CDS-P-littoralis_Contig637:144576..144646Pylaiella littoralis U1_48CDSP-littoralis_Contig637 144577..144646 +
1680791328.133617-CDS-P-littoralis_Contig637:144911..1453311680791328.133617-CDS-P-littoralis_Contig637:144911..145331Pylaiella littoralis U1_48CDSP-littoralis_Contig637 144912..145331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig637.42.1

>prot_P-littoralis_Contig637.42.1 ID=prot_P-littoralis_Contig637.42.1|Name=mRNA_P-littoralis_Contig637.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
MWSPDRRRGPDHLQSSRETCSWEWIHPQRIATTARMEVILQRQSKVTRMN
WTMTTWREKDFLVDALLSIVGGSIEDGEGGRIDSGSGNGRVDVVGSGSIG
EISNVRVSQDSSAGGESLEWTDALPLEDAEVSKLLQELALGGGEDDASLG
DFDEDFLGRPIDLEEVFSSSPKSNLADAHGSTRK*
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mRNA from alignment at P-littoralis_Contig637:143243..145597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig637.42.1 ID=mRNA_P-littoralis_Contig637.42.1|Name=mRNA_P-littoralis_Contig637.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2355bp|location=Sequence derived from alignment at P-littoralis_Contig637:143243..145597+ (Pylaiella littoralis U1_48)
CTACTGGTCTCGCACTCGGTGTGCGCTCTAGTACCATCACAGGCCCGGCT
GGCGGCGAAGGAAGGAGGCCCAATCGTCAACGGTGAGTCGAGAAAAAGGA
AAACATGACCAAACATGACCATAGGAGATCCGGGGGGTCGGACAAAACTG
GCGAACATGCTCGCCACGCAGCCCTCACGCTCGTCTCTGAGCGCACGGGT
CGCTGCGCAAGAAGGTTAGGAGCATAGAGTGTGTAAGTCTGGCTTTCTCG
GACAGAAGTCCGATTGTCAAACGGTATAGTGTACGCAGAGCAATGTCCAA
ACTTCGGACCCATAACCGTCACAGTGCCGTATCTCTCCGCTTGGGCACAC
TAAAATGGACTGGTTTGTCAAGCAGTTTGTTCGCACAATCAGAACGCTGT
CTTCCTGCTGCAACAGCTGAACCCCGCAGCATAACCTCCCCAACATGTTG
CACAGCACCACCTCAGTAGAAGCTGGGGGAGTGCTGCACACCCTGTCATG
TAGCATAGCCGCGTCAGACGCCTTTTTTGTCACTTGTGTCTCAATATTGT
CACGGACCCACCGCCGTGTTCGACTCAAGATGACACACCCCCTAGACCGA
CAATCAAAGCACGATTATCGACAACGAAGCGACGAGGAAGAGGACTTACG
TGTCGAAACGATACCCTGTGAGAGAGCTCTCAACCTGCCCGTAGCAACGC
GGACGTTTTCCGCGCTACCACTATTTCAGCTGTTGTTGATAAGTCGAGCT
ATGGAAATCGGTCCAGGTGATGTGTTGTCTTGCGTCGTACCACGGCCGTG
GTAGGTGTGTTATCCTGCGTCGTACAGCGTATGCACCCCCCGGCAGCAGC
ATGTTGTTCGCATACATAGCTACGCAGCTGATGCTTCCGGCGTCCATCCT
TGTTCTGCATTATCATGTACTAGAATTAGCCTCCATGTTGGGTGGGGTCC
TCACGAAGGGCCATCAAGCGGTCAACCAGCACTTCAGCCGCGTTCATGTG
GTAGCTCCTTCCCCTGCCTGGTTTCAAATTTCAGGGTTGAACAGGGTGTG
GCATGGACCCGAATACTCTGCGCGATGTGGTCTCCGGATCGAAGGAGGGG
TCCGGACCATCTCCAGTCAAGCCGAGAGACGTGTTCATGGTGAGCTTATG
TATACCCTCCTATCGCTGCCTTCCTCATCTCTGGTGTCAAGAGGTTGACA
GGAAAAGCCAATTTTTATTTTTAATCCAAGCACTTTCTCCTTCTGGGTGA
GAGAAAAGTACTCCTGCATTCAGACCATGTAATCTACTAACTCCCCTTCT
TTGTTGTTGTTTTCTCTCTCTATTCCTCCCGTAGGGAGTGGATTCACCCA
CAGAGGATAGCGACGACCGCGCGCATGGAGGTGATTCTCCAACGCCAATC
CAAGGTACCTTTGGCTATTTTGCAAAACACACTACGGGTTCTGACCCTTG
AACGTCTGCAGTGGTTGCCGTTGTTTGTCACATGCAAAACAAAAACATGA
CTCCCTGTCCCTGCTCGGTACCTTGTTCCATCGCGGACGTCGTCCATGGG
CACAGATTTGTTCAAAGATTTGTGATAATATTGAAGAACCCATAATCCGG
AGTAGGATTCACCATTACAGAAAATCAGGCCTTGGAGCTCATGCGTTCAA
CTGTTCGATCTGATTCAAGGTCACCCGGATGAATTGGACGATGACAACCT
GGAGGGAGAAGGATTTTTTGGTCGACGCTTTGCTTAGCATTGTCGGCGGC
TCTATCGAAGACGGCGAAGGAGGGCGGATAGATAGTGGGTCGGGAAACGG
GCGAGTCGATGTGGTGGGGAGCGGCAGTATTGGCGAAATTTCGAACGTCA
GGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAGTCTTGAATGGACCGAT
GCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGCTGCTGCAAGAATTGGC
TCTgGGGGGTGGGGAAGATGACGCGTCTCTCGGAGACTTCGACGAAGATT
TTTTGGGTCGACCTATCGATCTTGAGGAGGTGTTTTCGTCCTCGCCGAAA
TCGAACCTGGCGGATGCCCACGGTTCAACGAGGAAATAGTTATCCTTTGG
CCACTCTGATGTTGCGGGAGAGACAGCAGACTCTGCGGTGGGTGAAACCA
AGGGATGAGGGTCAGGGTTTTCAGCCTTGCTGGTTTCGAATATCGTCTGC
TTGTATCTGTGGTGCGGGATTGTTTGTGTCTGGGTGACAAACTTGAAAGA
CTGTATGGTGTTCTGACGGTCATCCCCGGGGTCTTCTTGTCAATTTATAC
GAGTTATTCGATGGAGTGCAGTGTTGCACATACTTGCCGTTTGTGCCACA
AGATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig637:143243..145597+

>mRNA_P-littoralis_Contig637.42.1 ID=mRNA_P-littoralis_Contig637.42.1|Name=mRNA_P-littoralis_Contig637.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig637:143243..145597+ (Pylaiella littoralis U1_48)
ATGTGGTCTCCGGATCGAAGGAGGGGTCCGGACCATCTCCAGTCAAGCCG
AGAGACGTGTTCATGGGAGTGGATTCACCCACAGAGGATAGCGACGACCG
CGCGCATGGAGGTGATTCTCCAACGCCAATCCAAGGTCACCCGGATGAAT
TGGACGATGACAACCTGGAGGGAGAAGGATTTTTTGGTCGACGCTTTGCT
TAGCATTGTCGGCGGCTCTATCGAAGACGGCGAAGGAGGGCGGATAGATA
GTGGGTCGGGAAACGGGCGAGTCGATGTGGTGGGGAGCGGCAGTATTGGC
GAAATTTCGAACGTCAGGGTTAGCCAGGACTCGTCGGCGGGCGGCGAAAG
TCTTGAATGGACCGATGCCTTGCCGTTAGAGGATGCCGAGGTGTCGAAGC
TGCTGCAAGAATTGGCTCTgGGGGGTGGGGAAGATGACGCGTCTCTCGGA
GACTTCGACGAAGATTTTTTGGGTCGACCTATCGATCTTGAGGAGGTGTT
TTCGTCCTCGCCGAAATCGAACCTGGCGGATGCCCACGGTTCAACGAGGA
AATAG
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