mRNA_P-littoralis_Contig1164.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1164.13.1
Unique NamemRNA_P-littoralis_Contig1164.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1164.13.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.800e-20
Identity = 51/126 (40.48%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:    1 QVTVDAFGGIVGAEHCEPSNIYISATVDQGGNMINAFRAMGVPTLICSGHRLNSAVQWATGIGGSFKSDGSGTCKNRLGHELVRKATAMVGV-----CNNDEFKKVQEELEEMCKLLELIRRNDTR 363
            ++T + F   +G E  EP +++++ TVDQGGN++NA +A+GVP + C+ HR+N+AV WA GI G+ +       +N++  +L++K  A+VGV      NND+ K++Q   E++  + +LIRRNDTR
Sbjct:  340 ELTREYFADFMG-EDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR-------RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTR 457
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BLAST of mRNA_P-littoralis_Contig1164.13.1 vs. uniprot
Match: D7G7X8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.150e-17
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:    1 QVTVDAFGGIVGAEHCEPSNIYISATVDQGGNMINAFRAMGVPTLICSGHRLNSAVQWATGIGGSFKSDGSGTCKNRLGHELVRKATAMVGV-----CNNDEFKKVQE 309
            Q+T   F  IV A    PS++Y++ATVDQG N++NA +++G+PT+ C GHR++S+V W  G+ GS       T KN+ G  LV +  A  G+      N+D F+ VQE
Sbjct:   82 QLTTGVFQSIVPA--VVPSDVYVAATVDQGLNVVNACKSLGIPTIPCLGHRIHSSVMWGIGVSGSVA-----TQKNKKGRVLVGRCAACAGMFSHSCTNSDAFRLVQE 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1164.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE4.800e-2040.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X8_ECTSI7.150e-1741.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1164contigP-littoralis_Contig1164:55790..56170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size367
Hectar predicted targeting categoryother localisation
Exons2
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.3132975-CDS-P-littoralis_Contig1164:55789..560611680789484.3132975-CDS-P-littoralis_Contig1164:55789..56061Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 55790..56061 +
1680789484.3257558-CDS-P-littoralis_Contig1164:56076..561701680789484.3257558-CDS-P-littoralis_Contig1164:56076..56170Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 56077..56170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1164.13.1prot_P-littoralis_Contig1164.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1164 55790..56170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1164.13.1

>prot_P-littoralis_Contig1164.13.1 ID=prot_P-littoralis_Contig1164.13.1|Name=mRNA_P-littoralis_Contig1164.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
QVTVDAFGGIVGAEHCEPSNIYISATVDQGGNMINAFRAMGVPTLICSGH
RLNSAVQWATGIGGSFKSDGSGTCKNRLGHELVRKATAMVGVCNNDEFKK
VQEELEEMCKLLELIRRNDTR*
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mRNA from alignment at P-littoralis_Contig1164:55790..56170+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1164.13.1 ID=mRNA_P-littoralis_Contig1164.13.1|Name=mRNA_P-littoralis_Contig1164.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig1164:55790..56170+ (Pylaiella littoralis U1_48)
CAGGTTACCGTTGACGCTTTTGGCGGTATCGTAGGAGCCGAGCACTGCGA
GCCATCAAACATCTACATCTCTGCCACGGTCGACCAAGGGGGCAACATGA
TCAACGCGTTCCGGGCCATGGGTGTTCCCACGTTGATCTGTTCTGGGCAC
CGGCTGAACTCGGCGGTGCAGTGGGCAACGGGCATCGGCGGGTCTTTCAA
ATCGGACGGCAGCGGGACGTGCAAGAACCGTCTGGGCCATGAACTTGTGA
GGAAGGCCACCGCCATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAAC
GACGAGTTCAAGAAAGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTT
GGAGCTCATCCGTCGGAACGACACAAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1164:55790..56170+

>mRNA_P-littoralis_Contig1164.13.1 ID=mRNA_P-littoralis_Contig1164.13.1|Name=mRNA_P-littoralis_Contig1164.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig1164:55790..56170+ (Pylaiella littoralis U1_48)
CAGGTTACCGTTGACGCTTTTGGCGGTATCGTAGGAGCCGAGCACTGCGA
GCCATCAAACATCTACATCTCTGCCACGGTCGACCAAGGGGGCAACATGA
TCAACGCGTTCCGGGCCATGGGTGTTCCCACGTTGATCTGTTCTGGGCAC
CGGCTGAACTCGGCGGTGCAGTGGGCAACGGGCATCGGCGGGTCTTTCAA
ATCGGACGGCAGCGGGACGTGCAAGAACCGTCTGGGCCATGAACTTGTGA
GGAAGGCCACCGCCATGGTTGGTGTGTGCAACAACGACGAGTTCAAGAAA
GTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCCGTCG
GAACGACACAAGGTGA
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