mRNA_P-littoralis_Contig637.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig637.36.1
Unique NamemRNA_P-littoralis_Contig637.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig637.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig637contigP-littoralis_Contig637:133402..135060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1387
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791327.927454-UTR-P-littoralis_Contig637:133401..1339311680791327.927454-UTR-P-littoralis_Contig637:133401..133931Pylaiella littoralis U1_48UTRP-littoralis_Contig637 133402..133931 -
1680791327.9628825-UTR-P-littoralis_Contig637:134668..1350601680791327.9628825-UTR-P-littoralis_Contig637:134668..135060Pylaiella littoralis U1_48UTRP-littoralis_Contig637 134669..135060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791327.9389498-CDS-P-littoralis_Contig637:133931..1343901680791327.9389498-CDS-P-littoralis_Contig637:133931..134390Pylaiella littoralis U1_48CDSP-littoralis_Contig637 133932..134390 -
1680791327.9534717-CDS-P-littoralis_Contig637:134662..1346681680791327.9534717-CDS-P-littoralis_Contig637:134662..134668Pylaiella littoralis U1_48CDSP-littoralis_Contig637 134663..134668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig637.36.1prot_P-littoralis_Contig637.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig637 133932..134668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig637.36.1

>prot_P-littoralis_Contig637.36.1 ID=prot_P-littoralis_Contig637.36.1|Name=mRNA_P-littoralis_Contig637.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MNGGQVDVVVESRLHTGLWEVSQPGTVTKINTDVGGNAGRNTTVSYDVLM
DSTMSMATMAAGGDRRSACPNPSRIACKPQEHEIRAARIRVKRPKTGLGM
AGDPNGRETPRGITPPRMIGQGGATREQEGSEKEEDYDEEELSESKGLRG
GTRN*
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mRNA from alignment at P-littoralis_Contig637:133402..135060-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig637.36.1 ID=mRNA_P-littoralis_Contig637.36.1|Name=mRNA_P-littoralis_Contig637.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1659bp|location=Sequence derived from alignment at P-littoralis_Contig637:133402..135060- (Pylaiella littoralis U1_48)
TCTAAACTGGACGGCGACAAGACGGACGGGCCAAACGTGGAGAAGGGCAA
CGGTGGAACGGTCGTTGGAGAGGGTGGCAGGGGAGGGAGTTCTGAAGCAT
GTAAAGACTAAACGGAGAAGGAGAAAACCAAGTACGTGCGCTCGCTCTGG
AGCAAAACAGGGGCCATGAGAAGAATGCGCTGTTGAGGCGGCAGCAAGGT
CGGAGCACCAGCGGCAAGGACATCAACTCGGGTAGTGCGGAGGACAAAGC
GGGCACGTCTAGCGCAGCTGGAGTTGAGGGGGTTGGGGTCCTCGGAGGAA
AACCCATTACCTACGGGCCCCGCGAAGGAAACGCTCTGCGTGCGTTGAGG
AAAAGGGCGCCACGGTTAGAGAAGGAGGCCACCAACCGATGAATGAATGT
GAGAGGTACCGAAAGCCGTAGTGCTTTTGAGATCTTGTTGTATACTTCGT
ATATTGCAATGTGTACGGTCCCCACAGAACGATGTATGCACGTTTATTTG
TCCCTTCATTCGCATGTCCGAACGTGCAGTCTGCGGTCAGGTGACGTGTT
TTACTTTCGTCTATGGTGTATGCCTCCACAGCCCTAATCGAGCAATGCGC
AAGGAAGAACATACGACATTTTCTTCGAAATCACTCCCCTCTTCTTCCGA
CTGCGCGTGCGTTGAAACAGGGGGGTCAAGTGGATGTTGTAGTCGAAAGT
CGCCTTCACACGGGACTTTGGGAAGTCAGCCAACCCGGCACAGTGACGAA
AATCAACACGGATGTAGGTGGAAATGCAGGCAGAAACACCACAGTGTCGT
ACGACGTGTTGATGGACTCGACCATGAGCATGGCAACGATGGCTGCGGGT
GGAGATAGACGTTCAGCATGCCCGAACCCATCTCGCATCGCCTGCAAGCC
GCAGGAACATGAAATCAGAGCAGCCCGAATAAGAGTAAAAAGGCCTAAAA
CGGGGCTAGGCATGGCGGGCGATCCAAACGGGCGGGAGACTCCAAGAGGG
ATCACCCCTCCGAGAATGATCGGACAAGGAGGAGCTACCAGGGAGCAAGA
GGGCTCCGAGAAGGAAGAAGATTATGATGAAGAGGAGCTGTCTGAAAGCA
AGGGGCTTCGAGGGGGAACGAGGAACTGATGAGGAGAAGCTGTCTGAAGT
AAGAGGGACTCCGAGAGGAGAGGAGATTTGGGCCAAGAGGGGCTGCCTGG
AAGCGAGAAGGGGTCCAACAAGGGAGAAGATTCAGACCAGGGGAACCGAC
CCGGAAGCAAGAGGGACTCTATGGGAAGAAGAGATTCGGACGAGGAGGGG
CTGTCCAGCAGCAAGGCTGAGGTAAACAGTGACATCTTCTCTTTTGACTA
CTTGTACAAGTGTGCCTCATACGGGGCTCTGCGCTCTGGAGTGCCTTGGT
CGGCCTGGGCTCTGAGCTCTGGTTGGGAAGCTGCTGTTTGGTTGGCCCTG
ATTTTGTTTGTTTCCAATTTCTGTTTTTTCGGGCCTGTATTTCTGTATTT
GTAACTACCCCAACGGTACTTTCCCTGATTTTGTTTGGGTGTGGCCATCG
TATATTATAATTTGTTTCTTTTATTTTTATTTTTTTCTCCTAGCATGATT
TATGCCTGTTTTGTAACCACGCGCTAGACTTTGGTGGTGAGCTAATATGA
GAATCAACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig637:133402..135060-

>mRNA_P-littoralis_Contig637.36.1 ID=mRNA_P-littoralis_Contig637.36.1|Name=mRNA_P-littoralis_Contig637.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig637:133402..135060- (Pylaiella littoralis U1_48)
ATGAATGGGGGTCAAGTGGATGTTGTAGTCGAAAGTCGCCTTCACACGGG
ACTTTGGGAAGTCAGCCAACCCGGCACAGTGACGAAAATCAACACGGATG
TAGGTGGAAATGCAGGCAGAAACACCACAGTGTCGTACGACGTGTTGATG
GACTCGACCATGAGCATGGCAACGATGGCTGCGGGTGGAGATAGACGTTC
AGCATGCCCGAACCCATCTCGCATCGCCTGCAAGCCGCAGGAACATGAAA
TCAGAGCAGCCCGAATAAGAGTAAAAAGGCCTAAAACGGGGCTAGGCATG
GCGGGCGATCCAAACGGGCGGGAGACTCCAAGAGGGATCACCCCTCCGAG
AATGATCGGACAAGGAGGAGCTACCAGGGAGCAAGAGGGCTCCGAGAAGG
AAGAAGATTATGATGAAGAGGAGCTGTCTGAAAGCAAGGGGCTTCGAGGG
GGAACGAGGAACTGA
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