mRNA_P-littoralis_Contig637.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig637.34.1
Unique NamemRNA_P-littoralis_Contig637.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 8.840e-51
Identity = 101/171 (59.06%), Postives = 123/171 (71.93%), Query Frame = 1 
Query:    1 MPSSAGEDRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRG--CHGRTLLGAAARG-RNEKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGF---TPLHVASRGGWHRLVEYLV 495
            M +S G DR+R+DGFE+EI  LVK+EAT+ QWK+WLR PLEHAAAKGN+DLFTRLMDAGA G  GWRG  CH RTLLGAAA G +++KM+ ALL AG  DD+NAVF      T R SAL+ +A  GAE  +K L+ AGAD   PD G F   +PLH+A+  G  R+V  L+
Sbjct:    1 MSASKG-DRSRVDGFEIEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAGVTDDVNAVFG-----TERESALHVSAARGAEEASKALMAAGAD---PDLGNFEDESPLHLAAEAGHDRVVRVLL 162
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.730e-50
Identity = 92/159 (57.86%), Postives = 109/159 (68.55%), Query Frame = 1 
Query:   25 RTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRGCHGRTLLGAAARGRN-EKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGFTPLHVASRGGWHRLVEYLVV 498
            R+RLDGFE+EI  LVK+EA   QWK+W RAPLEHA A+GN+DLFTRLMDAGADG AGWRGCHGRTLLGAAA G N +KMV ALL AGA+ D+N  F      T   SA       GAEA    L+IAGAD  L D  G + LH+ ++ G H +   L++
Sbjct:   10 RSRLDGFEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGARRDVNVRFGNTNESTLHVSAAR-----GAEASCTALMIAGADPNLRDWEGASSLHLTAKAGHHGVAGILLL 163
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.470e-47
Identity = 89/142 (62.68%), Postives = 108/142 (76.06%), Query Frame = 1 
Query:   19 EDRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRGCHGRTLLGAAARGRNEKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGFTP 444
            EDR+RL GFE+EI  L+++EAT  QWKEWLRAPLEHAAA+GN+DLFTRLMDAGA+  AGWRGCHGRTLLGAAA GR+EKM+  LL AGA DD+N +F G+       SAL+ AA  GA+   + L+IAGAD  + D  G +P
Sbjct:    9 EDRSRLVGFEIEIFKLLRREATPEQWKEWLRAPLEHAAAEGNLDLFTRLMDAGANTEAGWRGCHGRTLLGAAALGRSEKMIRTLLTAGATDDVNVLFGGESE-----SALHVAAARGADDTCRALMIAGADPNVRDRVGRSP 145
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 3.410e-47
Identity = 93/155 (60.00%), Postives = 117/155 (75.48%), Query Frame = 1 
Query:   34 LDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRGCHGRTLLGAAARGRNEKMVLALL-NAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGFTPLHVASRGGWHRLVEYLV 495
            LDG EVEI  LV+++ATS+QW+EWLRAPLEHAAA+GN+DLFTRLMDAGADGSAGWRGCHGRTLLGAAA G+NE++V  LL   GA +D+N  F   +      SAL+ AA    + +++ LLIAGAD  L D  G +PLHVA+  G HR++ +L+
Sbjct:   65 LDGLEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLLAEDGATEDVNVCFGDRLE-----SALHVAAGRDDQHLSRVLLIAGADPNLLDDVGRSPLHVAAEKGHHRVLGFLL 214
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.330e-44
Identity = 90/168 (53.57%), Postives = 111/168 (66.07%), Query Frame = 1 
Query:    1 MPSSAGE--DRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRGCHGRTLLGAAARGRNEKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGFTPLHVASRGGWHRLVEYLVV 498
            MP S  E  DR+RLDGFE+EI  LV++ ATS QWKEWLRAP EHAAA+GN+D FTRLMDAGA+  AGWRGC+GRTLLGAAA GR+EKMV   L AGA DD+N +F G+                      + L+I GAD  + D    +PLH+A+  G HR+V  L++
Sbjct:    1 MPGSKREEEDRSRLDGFEIEIFKLVQRGATSEQWKEWLRAPREHAAAEGNLDFFTRLMDAGANAGAGWRGCNGRTLLGAAAFGRSEKMVRTTLTAGATDDVNVLFGGER---------------------EALMIDGADPNVRDRRKRSPLHLAAVAGHHRVVGMLLL 147
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.420e-44
Identity = 88/138 (63.77%), Postives = 103/138 (74.64%), Query Frame = 1 
Query:    7 SSAGEDRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRGCHGRTLLGAAARGRNEKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATL 420
            S   +DRTR+DGFEVEI  LV++EATS QWKEWLRAPLEHAAA GN+ LFTRLMDAGA   AGWRGC GRTLLGAAA  +N+K++ ALL AGAK D+N +F        R SAL+ AA  GAE  +K L+IAGA+  L
Sbjct:    7 SQQSQDRTRVDGFEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAKSDVNVLFGAK-----RESALHLAAARGAEEASKALMIAGANPNL 139
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: A0A6H5KQY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.880e-43
Identity = 92/169 (54.44%), Postives = 109/169 (64.50%), Query Frame = 1 
Query:    1 MPSSAGEDRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRGCHGRTLLGAAARGRNEKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGFTPL----HVASRGGWHRLVEYLV 495
            M  S  EDR+R+DGFE++I  LV+ E T  QWK+WL APL HAAAKG +DLFTRL++AGADGSAGWRGCHGRTLLG AAR    +MV A L AGA DD+N  F G +S     SAL  AA  GAE     L+IAGAD    D      L    H+A   G HR+V  ++
Sbjct:    1 MSGSKREDRSRVDGFEMKIFKLVQAEETPEQWKKWLGAPLNHAAAKGKLDLFTRLINAGADGSAGWRGCHGRTLLGEAARSDGNQMVRAFLEAGATDDVNVRF-GAIS----QSALQVAAARGAEGSCSALMIAGADPNWIDYDDTVQLPSLLHLAGAAGHHRVVRVIL 164
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: D7FZ92_ECTSI (Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ92_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 3.680e-42
Identity = 89/167 (53.29%), Postives = 114/167 (68.26%), Query Frame = 1 
Query:    7 SSAGEDRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRGC--HGRTLLGAAARG-RNEKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGFTPLHVASRGGWHRLVEYLVV 498
            S   EDR+R+DGFE+EI  LVK+EATS QWK+WLR PLEHAAAKGN+DLFTRL+DAGA G  GW+G     RTLLGAAA G +++ MV ALL AG  + +N  F        R SAL+     GAE  +K L++AGAD  L +  G +PLH+A+  G HR++  L++
Sbjct:    4 SEREEDRSRVDGFEIEIFKLVKEEATSKQWKQWLRTPLEHAAAKGNLDLFTRLIDAGAGGEPGWQGWGHRERTLLGAAACGNKSDVMVQALLEAGETEFVNTSFGAT-----RESALHVTVARGAEDASKALMMAGADPNLGNVDGDSPLHLAAEAGHHRVIGILLL 165
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 8.830e-42
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 1 
Query:    7 SSAGEDRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGA-DGSAGWRGCHGRTLLGAAARGRNEKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGF 438
            S   + R+RLDGFE+EI  LV++E TS QWK+WL+ PLEHAAA+GN+DLFTRLMDAG   G  GWRGC+GRTLLGAAA G+++K+V ALL AGA DD+N +F  +       SAL+ AA  GAE  +K L++AGAD  L D  G+
Sbjct:    6 SKREDGRSRLDGFEIEIFKLVQEEVTSEQWKQWLQVPLEHAAARGNLDLFTRLMDAGGFGGERGWRGCNGRTLLGAAAWGKSDKVVRALLEAGAGDDVNVLFGPEGK-----SALHVAAARGAEEASKALMVAGADPNLFDCKGY 145
[Close]
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Match: A0A6H5KWD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD3_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 6.180e-41
Identity = 84/145 (57.93%), Postives = 101/145 (69.66%), Query Frame = 1 
Query:    1 MPSSAGEDRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMDLFTRLMDAGADGSAGWRGCHGRTLLGAAARGRNEKMVLALLNAGAKDDINAVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGG 435
            M +S GEDR+RLDGFE+E   L   EATS QW+E LRAPLEHAAA+GN DLF RL+DAGADG AGWR C GRTLL AAA G+NE +   +L AG ++D+N  F G+     R SAL+ A   GA+ ++  LLIAGAD  L D  G
Sbjct:    1 MSASQGEDRSRLDGFELETFKL--DEATSDQWRERLRAPLEHAAAEGNTDLFMRLLDAGADGIAGWRDCGGRTLLDAAAHGKNEDIERTVLKAGVREDVNVCF-GER----RESALHVAVVQGADNISGKLLIAGADPNLLDGAG 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig637.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQE9_ECTSI8.840e-5159.06Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D8LQE2_ECTSI1.730e-5057.86Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LQN0_ECTSI1.470e-4762.68Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D7G692_ECTSI3.410e-4760.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L812_9PHAE1.330e-4453.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI1.420e-4463.77MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQY9_9PHAE1.880e-4354.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ92_ECTSI3.680e-4253.29Pfs, NACHT and Ankyrin domain protein n=1 Tax=Ecto... [more]
D8LB27_ECTSI8.830e-4257.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWD3_9PHAE6.180e-4157.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig637contigP-littoralis_Contig637:128429..128926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQE9
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,Motile_Sperm
Model size498
Max annot lvl2759|Eukaryota
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons1
Evalue1.45e-51
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size498
COG categoryI
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791327.8885086-CDS-P-littoralis_Contig637:128428..1289261680791327.8885086-CDS-P-littoralis_Contig637:128428..128926Pylaiella littoralis U1_48CDSP-littoralis_Contig637 128429..128926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig637.34.1prot_P-littoralis_Contig637.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig637 128429..128926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig637.34.1

>prot_P-littoralis_Contig637.34.1 ID=prot_P-littoralis_Contig637.34.1|Name=mRNA_P-littoralis_Contig637.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
MPSSAGEDRTRLDGFEVEILNLVKKEATSVQWKEWLRAPLEHAAAKGNMD
LFTRLMDAGADGSAGWRGCHGRTLLGAAARGRNEKMVLALLNAGAKDDIN
AVFKGDMSCTFRTSALYTAAYWGAEAVAKTLLIAGADATLPDSGGFTPLH
VASRGGWHRLVEYLVV
back to top

mRNA from alignment at P-littoralis_Contig637:128429..128926-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig637.34.1 ID=mRNA_P-littoralis_Contig637.34.1|Name=mRNA_P-littoralis_Contig637.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig637:128429..128926- (Pylaiella littoralis U1_48)
ATGCCATCTTCTGCGGGTGAAGACCGCACACGCCTTGATGGCTTCGAGGT
CGAGATTTTGAACCTCGTCAAGAAGGAAGCTACCTCCGTGCAGTGGAAAG
AGTGGCTTCGAGCGCCGTTAGAGCATGCCGCGGCGAAGGGCAATATGGAC
CTCTTCACAAGGCTAATGGACGCTGGTGCCGACGGTAGTGCAGGTTGGCG
GGGCTGCCATGGACGAACGCTGCTGGGAGCGGCTGCTCGCGGCAGGAACG
AGAAGATGGTGCTCGCATTGCTCAATGCCGGGGCAAAGGATGATATCAAC
GCTGTCTTCAAGGGGGACATGTCTTGTACCTTTCGGACGTCGGCACTCTA
CACGGCGGCGTACTGGGGCGCTGAAGCCGTAGCGAAGACGCTCTTGATAG
CTGGAGCAGACGCGACGCTGCCAGATTCTGGTGGGTTCACTCCACTTCAC
GTGGCTTCTAGAGGAGGTTGGCACCGCCTGGTGGAATATCTGGTGGTC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig637:128429..128926-

>mRNA_P-littoralis_Contig637.34.1 ID=mRNA_P-littoralis_Contig637.34.1|Name=mRNA_P-littoralis_Contig637.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig637:128429..128926- (Pylaiella littoralis U1_48)
ATGCCATCTTCTGCGGGTGAAGACCGCACACGCCTTGATGGCTTCGAGGT
CGAGATTTTGAACCTCGTCAAGAAGGAAGCTACCTCCGTGCAGTGGAAAG
AGTGGCTTCGAGCGCCGTTAGAGCATGCCGCGGCGAAGGGCAATATGGAC
CTCTTCACAAGGCTAATGGACGCTGGTGCCGACGGTAGTGCAGGTTGGCG
GGGCTGCCATGGACGAACGCTGCTGGGAGCGGCTGCTCGCGGCAGGAACG
AGAAGATGGTGCTCGCATTGCTCAATGCCGGGGCAAAGGATGATATCAAC
GCTGTCTTCAAGGGGGACATGTCTTGTACCTTTCGGACGTCGGCACTCTA
CACGGCGGCGTACTGGGGCGCTGAAGCCGTAGCGAAGACGCTCTTGATAG
CTGGAGCAGACGCGACGCTGCCAGATTCTGGTGGGTTCACTCCACTTCAC
GTGGCTTCTAGAGGAGGTTGGCACCGCCTGGTGGAATATCTGGTGGTC
back to top