mRNA_P-littoralis_Contig637.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig637.28.1
Unique NamemRNA_P-littoralis_Contig637.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig637.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig637contigP-littoralis_Contig637:118454..122167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQE2
Preferred nameANKRD9
PFAMsAnk,Ank_5
Model size1228
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Exons2
Evalue0.000197
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Descriptionprotein ubiquitination
Cds size516
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791327.8017132-UTR-P-littoralis_Contig637:118453..1185201680791327.8017132-UTR-P-littoralis_Contig637:118453..118520Pylaiella littoralis U1_48UTRP-littoralis_Contig637 118454..118520 +
1680791327.8422694-UTR-P-littoralis_Contig637:121522..1221671680791327.8422694-UTR-P-littoralis_Contig637:121522..122167Pylaiella littoralis U1_48UTRP-littoralis_Contig637 121523..122167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791327.8143756-CDS-P-littoralis_Contig637:118520..1190011680791327.8143756-CDS-P-littoralis_Contig637:118520..119001Pylaiella littoralis U1_48CDSP-littoralis_Contig637 118521..119001 +
1680791327.8266573-CDS-P-littoralis_Contig637:121487..1215221680791327.8266573-CDS-P-littoralis_Contig637:121487..121522Pylaiella littoralis U1_48CDSP-littoralis_Contig637 121488..121522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig637.28.1prot_P-littoralis_Contig637.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig637 118521..121522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig637.28.1

>prot_P-littoralis_Contig637.28.1 ID=prot_P-littoralis_Contig637.28.1|Name=mRNA_P-littoralis_Contig637.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=172bp
MQKTHGMCYFFTDPRDTRHRAWMYQKHTPSKKILVPTEKTPLIVVMKIWV
GTGQRVHAISGLEVNGPRNAHAFLDMASIDRGLQVRPTPVGDLRATASTS
IACPSAKGNMVFFTRLRTDCSADGRRAGWRGCHGRTLLGGLLHTARSRRS
QVDGTPPLSQGQFPLEALLVI*
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mRNA from alignment at P-littoralis_Contig637:118454..122167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig637.28.1 ID=mRNA_P-littoralis_Contig637.28.1|Name=mRNA_P-littoralis_Contig637.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3714bp|location=Sequence derived from alignment at P-littoralis_Contig637:118454..122167+ (Pylaiella littoralis U1_48)
CAACAGCATATACTCCACGTGCCTCTCGGCCCCTACCCAACACCAGTACA
TACTCCACTTGCCACCTATGCAGAAAACACACGGTATGTGTTATTTTTTC
ACCGACCCTCGAGACACACGACACCGGGCTTGGATGTACCAAAAACATAC
TCCGAGTAAAAAAATATTGGTCCCTACAGAGAAAACCCCATTGATTGTTG
TGATGAAAATCTGGGTGGGAACAGGGCAGAGGGTGCACGCGATATCCGGA
CTCGAGGTAAATGGGCCGCGCAACGCACACGCGTTCCTCGACATGGCTTC
CATAGATCGAGGTCTTCAAGTTCGTCCGACGCCAGTAGGCGACCTCCGTG
CAACTGCGAGCACCTCAATAGCATGCCCCTCCGCTAAGGGCAACATGGTC
TTCTTCACAAGGCTACGTACGGATTGCAGTGCGGACGGAAGACGTGCAGG
CTGGCGGGGGTGCCATGGACGAACGCTGTTAGGGGGGCTGCTGCATACGG
CAAGATCGAGAAGATCACAGGTGGACGGTACCCCCCCCTTGTCACAAGGT
GACCCAAAATTTTAGCGGCTACTAGGAGGTCAGAAAGGTGTACCTTGGGG
AACATTCAAACGACAGGAACGATCATCACGACTACGGAAACGGAATTCGT
ATCATGCCTACGGGGGGAAGACAATCCACCCAACAAAAGCTCCAATGCAC
GCAGCACATGATTATTCTCAAAGCGCATTAAAACATAGGCTTCGCGATGT
GGTCTGCGCTCCTCTTGAGAGAAAGTTGTTTTTCAAGAGTGTCACTCAAG
TGTGGTGCCCTGCGGTAGCACAGCCAGCTACTGGTTATTCTCGCTATCCC
GTAATAGATTTATGTGTTTCAAACTACACACACGAGCAACAGGGGCTTGA
GCGTATTGAATGCTTCTTCTGTGCTCTGCGCCGCTGCCACATGCAGCAGA
CCATTCAGACTCAACTCGCGTTCGGTTCTGGAAACGAAAGCATGCACGAC
ATCGTCGCCCTTCGCCCCCGCTCCGAGTGGCGCGAGCACCAACCAGCACA
GGTGGACGACACCCCCCCCTTGTCACCGAGGTGGTTACCCAAACTTTTGG
CGTTATTTTCACTTCCTCGGTTTGAATTTCCCCCAAGGTGGGAGTGCCAT
GACCTTGTGATACCCTGCTAAATTTTTCCGTCACGGCCTTGTGACAAGGT
GTGATGTCGTCCACCCGTTAACACGAGGGGGGGTCCTTTACATCCCGGTA
GTCATGATATGAATTCCGCCTACGCAGTTGTGATCATCACTTCTGCCGTT
TGAACCTTTCCCAAGGTGCTGACAAGGTTAACCTTCAAGCTCTGTTGCTG
TCTGATGGCGTGAAGTGCAGCTTGTGGTGCCGACACAAAAACACTACTAT
GTATGTCCGGGATTTTGAACCAACTTCGCCAACATACTCCTTCTCTCGCA
ACCTTCCTTTGGCCAGCGCAGAAGCTATGACCACTGCGAAGAGACAGCGG
AACCGATGGACAGTATGCATGGTCGAGCACCATCTCCACGCCGATGATAA
ACGGGGTATTTTCCGTTCCACGGATCGTTCTTTTATTTCACGAGACGGGC
TGAAGAGCCCAATCGATAACAAAGACCCTTATCCCGAGAACAGATTTTCC
AAACATGATTATATCGAAAAGTTACACAAGGCTACGCGAACGGCGTAGCT
AAATGCCACCGTTTTGTTGGCTCCTACTTTTGCCCCCCCTACCGTGGGAT
GAGTCTCAACTGCCAACCATACCGAAAGGAACAAAGCGAACTAACTCCTC
AGACCACCAAACAAGACATCAGCGCGGTGGGTGCAGGGAGCGCCTCGAGG
GCACTAGTATGTGTTGTGTTGAGTTGTGTTTTGTAGCAAATGCCCCCGCA
GGACGTCTCCGCCGCGACCGTTTGAATGGTGTCTCGTGAGACGTTCTTTC
CGTTCTGGGCGGAAAGATGATAAGGGAGAGGAGCCTCGGGGGCATTTTAA
CTTGCACTTTGAAATAGAGCTCTCTGTACATTTGAGAATCAAAGATACCC
AACAAGAAACTATCAAGTTGGAGGGGAGGGTACATCAGTTTGCGCGAACC
ACTTGTGAATCCTACCGCCCCAGTTGGTTCTTTGTGTGTAAACGGTTCGT
GTCTTTTTGCAATCGCCTCGCATCATTGTCGGAGTTTCCGAGAGAAAGTG
CGGTTATCGGAGGCGTCGGGCCTATCGTAGGTTTGGTGTCACCCCTCTCA
TATTCCTATGTCGGAAGAGAGCTGTCCACTGGCAGCTTGGTAAACTCACC
CGCGGCAGATATTCTGAACAACATGACGTAGATCTGCGAAGAGACAGCTG
TCAGCTAGTGCAAGACGAGTTCAAATCAGTTCGAGCTTGGTTTGGGAATC
CGCCCCGTTACTAGAACGACATGGGATCCGAATTCCAGGCCATAGGCATG
TTTATTGCTGCCTCCGACGAGTTCCAAGTTTGGTGCGGTAACCCCGAAAT
GCAGGACCAATGCCCGGTGTGTAATTCAGGCTGGTATTTGTAGTCAAATA
GGCCTGGGGTGCGGACGGGATATCCCGGGGTGCCGTTGTCTTGACGTTTC
TACTGACACCTAAGGCCTAACGGCATTTCTGTCTCTTCGCGTAACACCTG
ATGAAGGCTGCCGAACAAGTCCAGTTCATTCAGTAGATTTTGGCGGCAGA
ATGCCTAGCGAGGTGCGACCACCACACTGTTCGCATGCCGTTGTCTACCA
CGCACGGTAACGCCGTATACCGTTACCGTTACGCACGATGCACACACTGA
CTGTTGTTGCGTGGATCTTGCTATTGCTGTGCATGGACGGGAACGCTGCT
CGAGGTTGCTACATTTATCGGCTAGGAGGCAATCAATCTCATGTTTTCCC
ACCTTCATGCTGTATCTGTAGTCTATGTCTCGGCGCTTTCAACCGTGTTG
TTGGATGTCGCCGGATGTATTTCGTGCAAGACAAAATGCCATATTCTTCC
TGCCCTTGTCGATCGGTGCTCTCTCCGTGAGCAGGGCAGTTCCCGCTTGA
AGCACTTCTGGTGATATGAACGCGAGACCGCTGCTGGTGTTACGGTGCTT
CTCGAAGACCTTTCACGGATCTTATGACCCGGAATAAATAAAAATGCCCT
AGTTGTGGTTGCATGACTAGCGTGGGCAGTAAACGGGGCTCGGGCGTTGG
TTGTGGTTCACGACGGACTGTTCTTTCCATGATGTGAATAAAGCATCACC
TTTGGCGCTGGGATTGCATATTCTTGGCCATTTTGCCATCGCTCTACTCT
CATACCCATTTCAGGCTAAAAGTCGTGTGTGGTGTAGTTTCTCGCGATCG
CCAGCGAAGGTGGAATGGATTGCGGAGGTAGTTTTTGTGTTTTTGTACCA
TTTTCCATGTGCTTTTGAAGCACTTTTTCGAAAACTGACTTGAGGGTGCC
TCCTCCTGTATGTTTTTACGGGTCGCCAGACGGCCGGTCAGGGGCTCTGT
TGGGGGTTAAGCTTGCCGTGGGCAAGTGTGTCCATCGTGCGCTGGGCCTC
GTGGTGCTGGTGCAACATGTGTACTTGGCTCTGAAAGCTTTCGTTTCATT
TCGTTTCAAGAAGGCCAATATTCAAGTGTTTCACATTTCTTCATCGGCTC
ACCTCCAGACAGGAATCGAACGAACTTTTTTACGTATGTACGCAGATTGG
GCATTTTGCAACTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig637:118454..122167+

>mRNA_P-littoralis_Contig637.28.1 ID=mRNA_P-littoralis_Contig637.28.1|Name=mRNA_P-littoralis_Contig637.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=516bp|location=Sequence derived from alignment at P-littoralis_Contig637:118454..122167+ (Pylaiella littoralis U1_48)
ATGCAGAAAACACACGGTATGTGTTATTTTTTCACCGACCCTCGAGACAC
ACGACACCGGGCTTGGATGTACCAAAAACATACTCCGAGTAAAAAAATAT
TGGTCCCTACAGAGAAAACCCCATTGATTGTTGTGATGAAAATCTGGGTG
GGAACAGGGCAGAGGGTGCACGCGATATCCGGACTCGAGGTAAATGGGCC
GCGCAACGCACACGCGTTCCTCGACATGGCTTCCATAGATCGAGGTCTTC
AAGTTCGTCCGACGCCAGTAGGCGACCTCCGTGCAACTGCGAGCACCTCA
ATAGCATGCCCCTCCGCTAAGGGCAACATGGTCTTCTTCACAAGGCTACG
TACGGATTGCAGTGCGGACGGAAGACGTGCAGGCTGGCGGGGGTGCCATG
GACGAACGCTGTTAGGGGGGCTGCTGCATACGGCAAGATCGAGAAGATCA
CAGGTGGACGGTACCCCCCCCTTGTCACAAGGGCAGTTCCCGCTTGAAGC
ACTTCTGGTGATATGA
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