mRNA_P-littoralis_Contig1164.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1164.3.1
Unique NamemRNA_P-littoralis_Contig1164.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: A0A6H5JTA2_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTA2_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 2.200e-90
Identity = 139/196 (70.92%), Postives = 164/196 (83.67%), Query Frame = 1 
Query:   70 AGGDDEPAIPGATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSLALGLKSVLTDVIKDLKGLKGGKMPTQMTIIVMAGSGLLLMLLFVVMT--PSKKSSPTRTKDD 651
            A G++EP IPGATVQVLTD DFER+TQ STGATTGDWF+EFYAPWCGHCRKL+  WTELAEKLGGEVNVGKVD TAN+GL KRFG+KGFPTLLFFSHG+ +KFAGPRKL++ +E+AKGGFKKTDS  V  PPSLA GLK +LT V+KDL+G+K GKMP+QMTI+V+ GS LLL++LF +    P  ++   R K D
Sbjct:   70 AEGEEEPTIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPAPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLVGSLLLLLVLFAITLSKPPPQAPSKRAKAD 265
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: D0MU36_PHYIT (Protein disulfide-isomerase, putative n=13 Tax=Phytophthora TaxID=4783 RepID=D0MU36_PHYIT)

HSP 1 Score: 168 bits (426), Expect = 3.060e-46
Identity = 77/123 (62.60%), Postives = 95/123 (77.24%), Query Frame = 1 
Query:  103 ATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSL 471
            + V VL++DDFE  TQ  +GATTGDW +EFYAPWCGHC+KL P + ++A +L G+VNV KVDVTAN  LGKRFGI+GFPTLL FSHG  YK++G R LE+L E+A+GGFKK +   V   PSL
Sbjct:   28 SNVIVLSNDDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLVPIYEKVASELKGQVNVAKVDVTANAELGKRFGIRGFPTLLHFSHGKSYKYSGKRTLEDLAEFARGGFKKVEGEVVNAAPSL 150
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: A0A3F2REI5_9STRA (Thioredoxin domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2REI5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 4.290e-46
Identity = 87/163 (53.37%), Postives = 109/163 (66.87%), Query Frame = 1 
Query:  103 ATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSLALGLKSVLTDVIKDLKGLKGGKMPTQMTIIVMAGSGLLLM 591
            + V VLT  DFE  TQ  +GATTGDW +EFYAPWCGHC+KL P + ++A  L GEVNV KVDVT N  LGKRFGI+GFPT+L FSHG  YKFAG R LE+L  +A+GGFK  ++  VA  PS    +K    DV KD   L    + T+  ++++  SG LL+
Sbjct:   28 SNVVVLTSSDFEAKTQAGSGATTGDWLVEFYAPWCGHCKKLAPIYEKVANDLKGEVNVAKVDVTDNAELGKRFGIRGFPTVLHFSHGKSYKFAGKRTLEDLSVFARGGFKSVEATVVAAAPSYLDFVKEQALDVKKDFVTL----LATKKNVLLVTFSGGLLL 186
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: H3G8D9_PHYRM (Thioredoxin domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8D9_PHYRM)

HSP 1 Score: 167 bits (423), Expect = 6.830e-46
Identity = 86/163 (52.76%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:  103 ATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSLALGLKSVLTDVIKDLKGLKGGKMPTQMTIIVMAGSGLLLM 591
            + V VL+  DFE  TQ  +GATTGDW +EFYAPWCGHC+KLEP +  +A  L GEVNV KVDVTAN  LGKRFGI+GFPT+L FSHG  YKFAG R LE L  +A+GGFK  +   V+  PSL    K    D+  D   L    + T+  ++++  SG LL+
Sbjct:   21 SNVVVLSTSDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLEPIYETVANDLKGEVNVAKVDVTANSELGKRFGIRGFPTVLHFSHGKSYKFAGKRTLEELSAFARGGFKSVEGEVVSGAPSLVDFAKQQALDIKHDFVTL----LATKKNVLLVTFSGGLLL 179
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: G4Z6X0_PHYSP (Thioredoxin domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z6X0_PHYSP)

HSP 1 Score: 167 bits (423), Expect = 7.710e-46
Identity = 87/162 (53.70%), Postives = 106/162 (65.43%), Query Frame = 1 
Query:  103 ATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSLALGLKSVLTDVIKDLKGLKGGKMPTQMTIIVMAGSGLLL 588
            + V VLT+ DFE  TQ  +GATTGDW +EFYAPWCGHC+KL P + ++A++L GEVNV KVDVT N  LGKRFGI+GFPT+L FSHG  YKF G R LE+L  +A+GGFK  D   V   PS     K    DV +D   L   K   +  ++V   SGLLL
Sbjct:   25 SNVIVLTNADFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLAPIYEKVADELKGEVNVAKVDVTDNAELGKRFGIRGFPTVLHFSHGKSYKFTGKRTLEDLAAFARGGFKSVDGEVVGAAPSFLDFAKQQALDVKRDFITLLATK---KNVLLVTFSSGLLL 183
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: A0A662WNR8_9STRA (Thioredoxin domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WNR8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.860e-45
Identity = 78/137 (56.93%), Postives = 98/137 (71.53%), Query Frame = 1 
Query:  103 ATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSLALGLKSVLTDVIKD 513
            + V VLT   FE LTQ  +GATTGDW +EFYAPWCGHC+KL P + +LA++L GEVNV KVDVTAN  LGKRF I+GFPT++ FSHG  YKFAG R L +L  +A+GGF+K +   V+  PS+       +TD+ KD
Sbjct:   45 SNVVVLTTSTFESLTQAGSGATTGDWLVEFYAPWCGHCKKLAPVYEKLADELKGEVNVAKVDVTANSELGKRFEIRGFPTIVHFSHGQAYKFAGKRTLPDLAAFARGGFEKVEGTAVSTAPSVLDQATQYVTDLKKD 181
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: A0A836CGC7_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC7_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.470e-44
Identity = 80/151 (52.98%), Postives = 103/151 (68.21%), Query Frame = 1 
Query:   97 PGATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGE-VNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSLALGLKSVLTDVIKDLKGLKGGKMPT 546
            P A V +LT+ +FE LTQ STGATTGDWF++ YAPWCGHC++LEP W ELA  +    VNV KVDVTAN+ +G+RFG++GFPTLL    G  Y + GPR LE L E+A GG+   +S  V  PP     L ++L+ V KDL  +  GK+P+
Sbjct:   37 PKAEVVLLTEQNFEHLTQASTGATTGDWFVKLYAPWCGHCKRLEPTWDELAAAVAARGVNVAKVDVTANRRVGERFGVRGFPTLLLLHAGRAYTYRGPRTLEKLTEFAAGGYAAAESVPV--PPPRGGALAALLSTVRKDLAAVPQGKVPS 185
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: A0A225V746_9STRA (Protein disulfide-isomerase domain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V746_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.370e-44
Identity = 76/137 (55.47%), Postives = 97/137 (70.80%), Query Frame = 1 
Query:  103 ATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSLALGLKSVLTDVIKD 513
            + V VLT+ DFE  TQ  +GATTGDW +EFYAPWCGHC+KL P + ++A+ L G+VNV KVDVT N  LGKRFGI+GFPTLL FSHG  YK+AG R LE+L  +A+GGFK  +   V+  P+    ++    DV +D
Sbjct:   21 SNVIVLTNADFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLAPIYEQVADDLKGQVNVAKVDVTENAELGKRFGIRGFPTLLHFSHGKSYKYAGKRTLEDLTAFARGGFKSVEGEKVSGAPTFLDFVEQQALDVKRD 157
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: A0A0N7L624_PLAHL (Protein disulfide-isomerase domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L624_PLAHL)

HSP 1 Score: 161 bits (407), Expect = 1.480e-43
Identity = 71/126 (56.35%), Postives = 93/126 (73.81%), Query Frame = 1 
Query:   94 IPGATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSATVAEPPSL 471
            +  + + VLT+ DFE  TQ  +GATTGDW IEFYAPWCGHC+KL P + ++A++L GEVNV KVDVT N  LGKRFGI+GFPT+L  SHG  YKF GPR L +L+ +A+ GFKK +   ++  P++
Sbjct:   17 VTSSNIIVLTNADFEHKTQAGSGATTGDWLIEFYAPWCGHCKKLAPIFEKVADELKGEVNVAKVDVTDNAELGKRFGIRGFPTILHLSHGKSYKFTGPRTLNDLVAFARDGFKKVEGEVISSAPTI 142
[Close]
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Match: A0A812WAE0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WAE0_SYMMI)

HSP 1 Score: 160 bits (405), Expect = 4.660e-43
Identity = 88/197 (44.67%), Postives = 119/197 (60.41%), Query Frame = 1 
Query:   76 GDDEPAIPGATVQVLTDDDFERLTQVSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTANKGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDS-ATVAEPPSLALGLKSVLTDVIKDLKGLKGGKMPTQMTIIVMAGSGLLLML---LFVVMTPS-KKSSPTRTKDD 651
            GD+E +   + V VLT  +FE  TQ STG+TTGDW +EFYAPWCGHC++L+P W ELA +L G  NVGKVDVT N+ LG RF IKGFPT+ FF  G  Y + G R LE  + + KGG+K   S AT  +P       KSVLT  +   K +  G+  T    +V     +L+++   +FV+  P  +  +PT +K +
Sbjct:   17 GDEETSSKASNVVVLTSANFEMETQASTGSTTGDWIVEFYAPWCGHCKRLQPVWEELATELKGIANVGKVDVTGNRDLGNRFDIKGFPTIKFFRQGQTYDYKGGRSLEAFVNFVKGGYKDAPSVATPDQPTWFETTKKSVLTPFLAAQKDIANGRYMTPNVFVVSMPILVLVVITFTMFVLPEPVVEPRAPTTSKKE 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1164.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTA2_9PHAE2.200e-9070.92Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
D0MU36_PHYIT3.060e-4662.60Protein disulfide-isomerase, putative n=13 Tax=Phy... [more]
A0A3F2REI5_9STRA4.290e-4653.37Thioredoxin domain-containing protein n=1 Tax=Phyt... [more]
H3G8D9_PHYRM6.830e-4652.76Thioredoxin domain-containing protein n=1 Tax=Phyt... [more]
G4Z6X0_PHYSP7.710e-4653.70Thioredoxin domain-containing protein n=5 Tax=Phyt... [more]
A0A662WNR8_9STRA3.860e-4556.93Thioredoxin domain-containing protein n=2 Tax=Noth... [more]
A0A836CGC7_9STRA4.470e-4452.98Thioredoxin domain-containing protein n=1 Tax=Trib... [more]
A0A225V746_9STRA5.370e-4455.47Protein disulfide-isomerase domain n=1 Tax=Phytoph... [more]
A0A0N7L624_PLAHL1.480e-4356.35Protein disulfide-isomerase domain n=1 Tax=Plasmop... [more]
A0A812WAE0_SYMMI4.660e-4344.67Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1164contigP-littoralis_Contig1164:21479..29476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LB12
PFAMsThioredoxin
Model size1367
Max annot lvl2759|Eukaryota
KEGG koko:K13984
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.78e-88
EggNOG OGsCOG0526@1|root,KOG0191@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-27_005660.1
Descriptioncell redox homeostasis
Cds size654
COG categoryCO
BRITEko00000,ko00001,ko03110,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1164.3.1prot_P-littoralis_Contig1164.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1164 21479..28765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.076153-CDS-P-littoralis_Contig1164:21478..216651680789484.076153-CDS-P-littoralis_Contig1164:21478..21665Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 21479..21665 +
1680789484.0874531-CDS-P-littoralis_Contig1164:23321..233421680789484.0874531-CDS-P-littoralis_Contig1164:23321..23342Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 23322..23342 +
1680789484.1087778-CDS-P-littoralis_Contig1164:24057..241101680789484.1087778-CDS-P-littoralis_Contig1164:24057..24110Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 24058..24110 +
1680789484.1191876-CDS-P-littoralis_Contig1164:24801..248701680789484.1191876-CDS-P-littoralis_Contig1164:24801..24870Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 24802..24870 +
1680789484.1291208-CDS-P-littoralis_Contig1164:26236..263261680789484.1291208-CDS-P-littoralis_Contig1164:26236..26326Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 26237..26326 +
1680789484.1368592-CDS-P-littoralis_Contig1164:27074..271401680789484.1368592-CDS-P-littoralis_Contig1164:27074..27140Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 27075..27140 +
1680789484.14516-CDS-P-littoralis_Contig1164:28597..287651680789484.14516-CDS-P-littoralis_Contig1164:28597..28765Pylaiella littoralis U1_48CDSP-littoralis_Contig1164 28598..28765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789484.1535475-UTR-P-littoralis_Contig1164:28765..294761680789484.1535475-UTR-P-littoralis_Contig1164:28765..29476Pylaiella littoralis U1_48UTRP-littoralis_Contig1164 28766..29476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1164.3.1

>prot_P-littoralis_Contig1164.3.1 ID=prot_P-littoralis_Contig1164.3.1|Name=mRNA_P-littoralis_Contig1164.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
AEEASEGAAAAAAAAAASEVATDAGGDDEPAIPGATVQVLTDDDFERLTQ
VSTGATTGDWFIEFYAPWCGHCRKLEPAWTELAEKLGGEVNVGKVDVTAN
KGLGKRFGIKGFPTLLFFSHGSQYKFAGPRKLENLLEYAKGGFKKTDSAT
VAEPPSLALGLKSVLTDVIKDLKGLKGGKMPTQMTIIVMAGSGLLLMLLF
VVMTPSKKSSPTRTKDD*
back to top

mRNA from alignment at P-littoralis_Contig1164:21479..29476+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1164.3.1 ID=mRNA_P-littoralis_Contig1164.3.1|Name=mRNA_P-littoralis_Contig1164.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7998bp|location=Sequence derived from alignment at P-littoralis_Contig1164:21479..29476+ (Pylaiella littoralis U1_48)
GCGGAGGAAGCGTCAGAAGGCGCCGCTGCTGCCGCTGCCGCTGCCGCTGC
GAGCGAGGTTGCCACCGACGCGGGGGGGGATGACGAACCCGCCATCCCCG
GGGCCACGGTCCAGGTCCTGACCGATGACGACTTCGAGAGGCTCACTCAG
GTGTCCACGGGAGCCACGACCGGCGACTGGTTCATCGGTGAGTCAGGCTC
GACATTGGAGAGGGAAACGCAGGCAATGATATCGAACACCCGGGGTCGAT
CGACTTGCGTACCCCTTCGCGGGTGGGTGGAGCACTGGCGAAAGGTGTAT
GCATACGAAGTAGCATATTCTCAACCACACCCTATCGGAAGGTCCCCTGA
GTGACACTATCGTTCCCAGTTATTGTTTGCTTTTGATGCAGTACGCGTTC
ATGCAAAAACATGCCTGTTTATTTTTACTGTGCTACTGTGTGACCAACCA
GTACCGGCCGGCGCGCCCAACTTAAACCTATGGCTGCTTCTTACGGTCAA
CGTTATTTGGTCTGGCGATTTGACCCCCTACTCAAATCCAACCAGAGAAC
CCCCCTACCTCCCCACCCGCAAACAGCCCTGTCGGACACATCATGCGACA
GCACCAACCAGAACCCGACCCCTGGGACACAAATGCAGATCAAACCTGAT
GGAGCGTGTCCTCCTATGTTCTCAAGTTGGTCACAGGAAGTTTGGTGGCA
GTGGGTGCGGGCCGTGGCGAGATTTTGGCGGCGATGTGTGTTGGAGTTCG
AAAAACAAATGAAACGAAATAACAGACTTTGCTCCTGTTTTTCCGGCCAA
AAAACAGGCTCGGACAGCGTGTTTTTTTCACCAGATTTTCCTACCTCAAC
CCACCCCGCCGCCGAAACCTCGCCACATTCAAAGCCCACACCCACCAAAT
TTCCTGCGGCCAACATAATAACACTGGAGCGTACCCTCCAACAATTATAG
TCTCGATTGGTGTCCCAGGGGTCGAGTTCTGCTTGGTGCTGTCTCCTGTT
GTGCTGAAGAAGTAGCTTTTCAAACCGTTTGGGCTCTCCGTTATTGCGGG
GGCGGGGGTACCTCAGCAGAAAAAACACAGGACCAAATAACAGAGCCGTA
AGAAACTGTCCAAGGGTGTAGACTGGCCTCCAGAATAACGAATGGAATGA
CAACACACGAGTTATAACACCCGAGGACTGGGGGCCTATCATACTCATAC
CCGTTGTTTTGGCCGTTTGGGTGTAGGTTGAAACCATCGTCTGGCACGTC
TCTTAGTCCCAAGACAGAGCGGCCCACCGAGCGAGTGAGCCAAGTGTTGC
GAGCTTCCTCGGGCACGATACCCGCGCTTGGCTTTGGCGAGCACGCCCAA
ACGCCAAACCGGATGGTAGCCCCTGACGATCCACACCACGCTGTGGAAAA
GCTTGCCCTCCTGTTTTCATCGCGTCGGAAAGACGGTTCAGTGATACCGG
CGTGTCGTTGATGGCCGTGATCGCTTGCTGAGCTGGCCCGCCGGGTGGCT
CGATGGCGCCCCGCCCCCGTCGCACCTTATGGCCTTTGTCGTGTTGGAGC
TCCACGAAAAGGCAGTTAGTTGTTTGGATATCCTAGTGTAAGTTTATGCT
CTCAAATTGGTGGGTCCGCCTGTTTCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCTCCGTCGCCCGTTCTCCGTTTTTGGCGCTGCTACGC
TGTTTCGCGGACTACGCCTGGATGGCTTTTGCCGATTGCCGCCGATACCT
GCTCGCTGCTGCCGGTCATGACGGCGACGGCGGTGATGATGATGATGACG
ATGATGATGATGATGATGATGGTGCCGGCGTTGTGGCGCGCAGAGTTCTA
CGCTCCGTGGTGTGGTGAGTAAAGAGGAGGCGTTCGTGCACCCACAGCAT
GCTGTACCTATTCCAGAGAGGGGGTCTCGCAGTTGATGCAAGTCGGGCCC
CCCAGGGGGCGGTGGGGGGACTTCCTTCGTCTGGTGTTTATGATGCATGA
AGCAGTCGTGGTCTGTTCTTACACTTTTTTGCAGCAGTACCTTTCTGCGA
GAGCACGCCAGACGGTGGGGTGGGGGGAGACTCGAAACCAAGCCATTTCG
CTGATGCTCAAGCTTCTTCTTGTTGGCTCGCTACTGCTGTACTTGTATGT
TTTGCTGCTGTTAAAGGAGAACTTCGTACTTAGTACTTCGTAGTTGTCGA
AAGTGTATATTGACACGAGAAAGACGAAAAGGGGCTTTATACCGTAATCA
TGCGAGTCATCGCACCCCCGTGTTATCTTTTTTGCATTCCGTATTGCTCC
ACAACCAGGAGAGTGCCACTGCCGAAAAGGGTGGTGTTGGAAAGATCTCT
CGTCGAGAGCTTTCGTATGACGGGTCGTTTGGTGTTCTCACTCTCCTGGT
TATGGAGCAATACCGAATGCAAAAAAGCTAACACGGGGGTGCGATGACTC
GCATGATTACGGTATATCGCAAAAGGTGCACAGTATATCTTGAATAAAAG
TGAAACGCCTCCCCCCCCCTTGTCCACCCGCACACCATTTGTTGTGTGCT
GCCACCGCCACCGGTGCTCACGACTCCAGGGCACTGCAGAAAGCTGGAGC
CCGCTTGGACAGAGCTCGCCGAGAAGCTTGGGGTGAGGTTTGTTCACATC
ACTAACGGTATTATTTTGTACCGATACTTGAGGTTTCATACGAAATGTAT
AATTTGGGGTAGTTTGTACAAGTATAAATCAAGCAGTTACGACGACGCTG
TCGTAACAAAACTTGGAGCAATTAATCTTCCTTGATTCTTGCACGCACCG
GTGATTTCTACCCCCCCCCCCCCCCCCCCGTATTTTTACAGTCTGATACA
TTTGACGAATAATTTAGTCTTCGTGTTTGAAACTTTGACATGACAGTAAA
AAATGGACACTGCTGTCAACAAATATGTAGCACAGAAAATATCGACACTT
TCTATCTATCCACCAAGTATCTCCGAGATGATTCCCGCGACCATGCCCTT
CACTTCGTCAAGTCCGTGTCTGATGTTTTCGCGGACATGTTTGTTATTTT
TACACCATGCACCTGTACTCCAAAAGTATAATTTTTTTTTTTCGTTCCTC
AGCAAGATTCCCTCCGTCGTCTTCGCTCTCTTGTTCATCCCCTACTAGCA
TGCGTGTTTTTCTCTCCTCTCTTCCGGTGTGTGTGTATTTCAACGTCCGT
CTGTATTTCAACGTCCGTCTCAACGGTACAAGACAATATACGACATAGAC
ATGGTGAAACCAAGATCGTTTCAGTGATACAGGACATACCTTGCCCCGTT
TGCCAACGTTTCGGTACCAACAGGGAGAAGTCAACGTGGGCAAGGTGGAC
GTCACCGCGAACAAAGGCTTGGGAAAGCGCTTCGGTATCAAGGTTTGTTC
GTGCGTATGATACACACGCATCGTGCTGACCGATAGGTCGAAATCACGCA
AGCAAGCTAGAGCCCACCAGCATCCCTCCAGCTCATGAGCGGCACTATCA
TAATCAGCTTGTTTTATTTATTGTATCGATCGTCGGTTCGTTAAATCGGC
AGGACAACGGGGTCAAAAACAAAAAAATCAAGAAGCGGTGCGTTGGTTTC
ATTTTTATCGTAGAGGCGGCGCATTTGTGTCGTTCCCCTTGTGGATTTTT
TATTGATTTATTTATTTACTTCGCCTTGATTGATTGATTGATTGATTGAT
TGATTGATTGATTTTTTTATTTATTTATTGATTGATTGATTTATTGATTT
ATTGATTTATTGATTTATTGATTTACTTCGCCTTGATTGATTGATTGATT
TGTTGATTTATTGATTTATTGATTTTTTATTGATATACTTCGTATGGTAT
TTATTTACTTCGCCTTGGTTGATTAAATGGTTGATTGATTTATTTATTTA
TTTATTTATTTATTTATTCATTTGTTTCGCGAGAAAAAGGGAATCCGCGC
CCTCGACAGACGTTGTCGGAATTGTACCCCTCATGAAGGGGTCCTGTTCC
ACAATTTATCTACTTCGTATTTATTTATTTTATTCAATCAGCCGTCGGCT
CTTCGTCCGGCGGACACGATGGTTGAAAAACGAATCACGAAACAAATGGT
GCGTTGGGGTTGGTGCGTTGGCTACGTTTTTGTTTTGTTTCGTCGTTGCG
TCCCGTCGCACTCCATCAGCGTAGTCTGGTTCGAGAGCATGTGACTCGCC
GGACACGCTCGACGACGGCTCTTCTCGTAGACATGCATACGTGCGCACTG
CTGTTGCTGCTACAACAGCAACAGCAGCAGCAGCAGCAGTGCTTGTCTCG
GACCCGGCAAGTGCACCTAACGGGTCTAGGTGTTGCGTCGCGGCCGCACA
TGAGAAATGAGCAGGCACACCCACACAAAACACAGATGGATAGACAGACA
CACACATACAAGTATGTTTTTTTGGGGGGGGCGCTTGCTCTGTTTTACGA
CAACGAGCGGGCTTCGCAGATACGTATCGGCGGTTGGCTGATGCAAGGGT
GGTGAACACGAAAACGCCCACAATACCGTCAAAACTTGTCAGATTTAATT
TTGTGCAAGGCTTGTGCCCTCGAGCCATGATGTGATATAAAAGTAGATTG
TTCTCGATGGTCGAAATGGAAAAACAGCAACAGCAACAACAACTACAACT
ACAACAACTACAACAACTACAGAAGCAGCACACTGAAAAAGACGTGGGAA
ACAAGGTAAAATGCTCACCGCCATCCCCTCCCTCCAACCCCACCTCCACC
TCTTCTAGGGCTTCCCGACGCTCCTGTTCTTCTCCCATGGGAGCCAGTAC
AAGTTCGCCGGGCCTCGCAAGCTCGAGAACCTTCTCGAGTACGCTAAGGT
CAGTCCATCACTCAGTGAGCGAGCGCGGGAGAGACTGAATACTTGTACTT
ATTTTTTTTTGTCACTATCCCACAATTTTCTGCATATGATGCCGTATACT
AGCTGACAAAAGTCTTGCTTTGTGCGAGTTTTTTCTCTTCCAGTTTGACG
TCCAGCAGTAAATTGAGGTTTAGCCGGGGGTCACACAGAAATGTTCATCT
TCCTGACCCCCCCCCCCAACCTCGTTCCTTGTGCGGTTCATGCCTTCAGT
TTTTTCGCGACATGAGTTCATGTTTTTTGTTGAATTTTCATCGAAAGTTC
CTGTGTTGGCCAGCGCCCGGCCGTTCTGTGTTGTTTTTTTTCGGCGATGG
AGAGCAAATCGCCGCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTTTCTGCCCCGCCTTGCA
GCAGAGCAGTAGCGCCAGCAGCCAGCTTCGTTGTCGACAGTGTCGGGGGG
AACATTGTCGTTTATCATTCATTGGTCTTTTGCTTGTCCAGTTAAACAGG
TACGTACAACAGCAGTGCACATCCGTTCGGTTTCTTTTTTGTTTCCATCT
CTCAAGGCAATGACCATAGTACTGAAGACCTTTTTTAGATTTTTTTTCTT
GCCTCTTTTTTGGACCCATCTGATATGTGTACACTATTCGTGTCGCTGTT
TTTCTTCTTGGGTGTTTCTAATCCTGTTTCCCTTCAATGCGAGCAGGGTG
GATTCAAGAAGACGGACTCTGCGACGGTAGCCGAGCCCCCGTCCCTGGCG
CTCGGCTTGAAGGTGACTGACGCCTGCGCACGTTCTTGAGCACAACGCCA
CAGCAGGACTTTCCCACTCGAGTGATCTTTACCCTTGGATTCTACCCTTG
ACATTGTCTGGTGTTCCGGTCTTGGCGGAATCAAATTGTCGATGCATGTA
TCCACCGACCACTCTGTAGACCACACTTCTTCTTCCGGACCGCCTCCGCA
GGAAAATTAAGTAAGTAGGAATTAGATAGGGGGGTTACGCAACCCTAACC
CTAACCCTAACCCCAACCCCGAACCCCCCACTAATTTCAACTAAACTTCA
TTTTTTTTAAACCCTGGGAAGGCTTTTGCTTCTTCCGTGCCTAAGATTTT
CCTGCCTGTGTGGTATCTATCATATCATCGATAACCTCCGAATTACGAAA
AGCGACCTTGTGCTGCTCCGCACGAAGCGTGTCATCACCTCCTGTACTGC
TGCTGGAGTTCGACGTTGTGGTCTGGTATCGTTTTGTAGCGGATTTTTGT
CGAAATGCATGCAGTATGTAGACGTGCCTGTTCAAGCGCAACGCTTTGTT
TGCCACCAGGCGCGTAGCGGCTCACCAAGCTTGTTATTGTTTACGTTGTC
TAGGGTATGGCAGTCTAGCTTTATGTTAAGCTTTGTCCGTGCCACGTGAA
TTTTGATTTTGCATGTGCACCAATGTACTACGAAGTTCTGTATCATATAT
CCTTCGCCCTCTATGGATGACGGGGTTTCGCAGAATGCTTCGTGCCCGGT
TTGCTCCATGCTCAGGGATAGGGCAGAGCGGCCGTGATGGGCCGTCTTCA
TGTCTCATGATAAAGTCGAGTGAAAGAGACGGCGCGTGCCACAGCCTCTC
TCGGGTCACGCGCGAGTCACACGATCTGCACGCAATAATTCGCGCGCGCA
ACATAACGCCTCCTCCTACAGTACCCATTCATGAAACCTATCCAAATCTC
CGGAGACTACGTACGTCTACGTGACTTGCCGTACGAGCAACTCGAGGGTG
TTGACGCTAGATGTGGAACGTGGGTTTTCCAGGTTGTGCGCTGCGGGCTG
TTTATCTTTGGTGGCATCATACAGTAGTGTGCATGGCGTGGAGCGCGCGC
TGGACCTCACCTCTCACGACGAGAGGGAGGTTCGAGATAAGAGTCCGAGG
TGTTGTGTGAGAGACGAAGAGCAACAGCGCGCGGAAGAACTTCGCGGTGC
ACGTGCACGCACGCTCTTTTTTTTGTGCGAAGTACGCGCGATAGATTTCC
ACCTGGACCGTTCCCTGAAGTTCTTAGATGGGGCGCTCCGCTGCCCCATC
GTGAGTACTCCTCGCGGGTCACCGGATGACGTCCCCGTTGACGGGTACGG
TATGGTCAGATGACATTCACAATTATAGTTTATGAAGATACGTTTTAGCG
GGAAACTCTCGCGCTCACCCCTCTACAACCCCCCCCCCCCGTGCGCGCTT
CTCCTCTCCACTACAACAGAGCGTTCTCACCGATGTGATCAAGGACCTCA
AGGGACTGAAGGGTGGCAAGATGCCAACCCAGATGACGATCATCGTGATG
GCGGGGTCGGGGCTGCTGCTCATGTTGCTTTTCGTTGTCATGACGCCGTC
GAAGAAGTCATCCCCCACCAGAACCAAGGATGATTGATTAAACTACTGCT
GTTGTGTGGACATCAAAATAAAAACATGTACGAAGTGTGTACATCTTCGC
ATTTTGGCGCAGGCACGTCGTGTGGGAGTGTTGGTCTCTTGCCCTCTCTT
GGAAATGACTGACGTGCCAGGAACGTATTGATTTCGTACATGCCGTGATG
TTAAAAGTCCGGCGGTATCTACAAAGTATCATGCCGGCTTAGCTCTGTGT
ACAGGGCCTTCTACTTTTTCATTTATATTTCATCTTTCTGCTGGGGCACC
ACTTGTGCCTGTTTGACATCGGTCCAACGTTTAGACTGTTGTGGCGGTGG
GCCCATTTGAGAGTCAACAACAGCTTGAAGCTGCCGTACGGGGGGTTAAG
TTGACGTAAGCATGTTCTTCGAGCCGTCAGCAAAAGCAACCAATCACGTC
AAGTTCGGATGCATGCCTAGAGGTGATGTTTCAAGAGGGTCACATATCTC
CAACGCCTGTCGAGGACAATTCCCCCTTTTCACTTTATTGGCGTCGGCGA
AGATTTGTCTGATCATTGTCATCATGGTGAATAATATTGAATCAAATCCC
GGCACCCGGTTTGTTGAAAAATAATGCCAAAATAGATGCTGAGATCGATA
GAGATCAAAGTCAGATTTCGAAGTTGTGGAACCTCTGAAAGTGGCGTGCC
GAACGCAGCGAACCCGTTGTATCACGCACATAGTGAAAAACGAAAAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1164:21479..29476+

>mRNA_P-littoralis_Contig1164.3.1 ID=mRNA_P-littoralis_Contig1164.3.1|Name=mRNA_P-littoralis_Contig1164.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig1164:21479..29476+ (Pylaiella littoralis U1_48)
GCGGAGGAAGCGTCAGAAGGCGCCGCTGCTGCCGCTGCCGCTGCCGCTGC
GAGCGAGGTTGCCACCGACGCGGGGGGGGATGACGAACCCGCCATCCCCG
GGGCCACGGTCCAGGTCCTGACCGATGACGACTTCGAGAGGCTCACTCAG
GTGTCCACGGGAGCCACGACCGGCGACTGGTTCATCGAGTTCTACGCTCC
GTGGTGTGGGCACTGCAGAAAGCTGGAGCCCGCTTGGACAGAGCTCGCCG
AGAAGCTTGGGGGAGAAGTCAACGTGGGCAAGGTGGACGTCACCGCGAAC
AAAGGCTTGGGAAAGCGCTTCGGTATCAAGGGCTTCCCGACGCTCCTGTT
CTTCTCCCATGGGAGCCAGTACAAGTTCGCCGGGCCTCGCAAGCTCGAGA
ACCTTCTCGAGTACGCTAAGGGTGGATTCAAGAAGACGGACTCTGCGACG
GTAGCCGAGCCCCCGTCCCTGGCGCTCGGCTTGAAGAGCGTTCTCACCGA
TGTGATCAAGGACCTCAAGGGACTGAAGGGTGGCAAGATGCCAACCCAGA
TGACGATCATCGTGATGGCGGGGTCGGGGCTGCTGCTCATGTTGCTTTTC
GTTGTCATGACGCCGTCGAAGAAGTCATCCCCCACCAGAACCAAGGATGA
TTGA
back to top