mRNA_P-littoralis_Contig636.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig636.28.1
Unique NamemRNA_P-littoralis_Contig636.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig636.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig636contigP-littoralis_Contig636:127832..128727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size896
Hectar predicted targeting categorysignal peptide
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791325.6617594-UTR-P-littoralis_Contig636:127831..1282451680791325.6617594-UTR-P-littoralis_Contig636:127831..128245Pylaiella littoralis U1_48UTRP-littoralis_Contig636 127832..128245 +
1680791325.6879034-UTR-P-littoralis_Contig636:128710..1287271680791325.6879034-UTR-P-littoralis_Contig636:128710..128727Pylaiella littoralis U1_48UTRP-littoralis_Contig636 128711..128727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791325.6767364-CDS-P-littoralis_Contig636:128245..1287101680791325.6767364-CDS-P-littoralis_Contig636:128245..128710Pylaiella littoralis U1_48CDSP-littoralis_Contig636 128246..128710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig636.28.1prot_P-littoralis_Contig636.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig636 128246..128710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig636.28.1

>prot_P-littoralis_Contig636.28.1 ID=prot_P-littoralis_Contig636.28.1|Name=mRNA_P-littoralis_Contig636.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MMASLAVTAAAIAAKAGISVWLPQLLTRGARCSVVARRERFVKDDPSARM
ILDWSTTFGPPRIPGFVHFKEATVQFLSSGLAPAVTAAVELLISVCCPAS
LSCSAHIEAFHTRAGCLTHEWCCLSCTHKHIEAFLNLGMLFNHPLVSGLR
LNCK*
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mRNA from alignment at P-littoralis_Contig636:127832..128727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig636.28.1 ID=mRNA_P-littoralis_Contig636.28.1|Name=mRNA_P-littoralis_Contig636.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=896bp|location=Sequence derived from alignment at P-littoralis_Contig636:127832..128727+ (Pylaiella littoralis U1_48)
TGGGGATCCGTGTGACGCACAGCAGCAGTGTATCATATGCGTGAAATTTT
CGCTACTGGTGTAGTATCAAATGTTGGAAAAGTATCATATGTGTCAGAGA
AAGAGGTCGAAAGAGAGCATGGTGAACAACGAAAGGTATGAAATATAGAA
ACACGACGAAACGGGAAAACGACAAGGTACGTCAATTCATTCACCTCGCG
AGAGACGTCCGACGACTGAACCAAGGCCACAAGTTTCCGGTTATCCTCGC
GCTGGGCAGCATCCACCGCCAGCGCCCGCTGCTCCTGATTGGGGGCCACT
ACCTTGGTGGTGACCACCTCCTCTTCCTCAGCTACCGAACCACGCTCCGA
GGCTGTCTCTTGTTCCCCCGCCCCTGCCGGCTGGCTTGGGTTGTTCTTGA
ACGCGGCGGTGCCGATGATGGCGTCGCTTGCTGTGACCGCTGCTGCCATC
GCCGCGAAAGCCGGCATCTCGGTCTGGTTACCCCAGCTCCTCACCAGGGG
AGCTAGGTGCTCCGTCGTTGCTAGGAGGGAGAGGTTCGTGAAGGACGACC
CGTCTGCGAGAATGATCTTGGATTGGTCGACCACATTTGGTCCACCGCGC
ATACCCGGCTTCGTGCACTTTAAAGAAGCTACAGTCCAGTTCTTGTCCAG
CGGGCTGGCGCCTGCAGTGACAGCCGCTGTAGAGTTGTTGATCTCTGTGT
GTTGTCCGGCCTCTTTAAGTTGTAGTGCTCATATAGAGGCTTTCCACACC
CGAGCTGGCTGTCTCACGCACGAGTGGTGTTGTCTCTCATGCACTCATAA
ACATATTGAAGCTTTCCTCAACCTGGGGATGCTCTTCAATCATCCCCTTG
TTTCTGGGCTCAGATTAAACTGTAAATAAAAATTCTTGCCCTGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig636:127832..128727+

>mRNA_P-littoralis_Contig636.28.1 ID=mRNA_P-littoralis_Contig636.28.1|Name=mRNA_P-littoralis_Contig636.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig636:127832..128727+ (Pylaiella littoralis U1_48)
ATGATGGCGTCGCTTGCTGTGACCGCTGCTGCCATCGCCGCGAAAGCCGG
CATCTCGGTCTGGTTACCCCAGCTCCTCACCAGGGGAGCTAGGTGCTCCG
TCGTTGCTAGGAGGGAGAGGTTCGTGAAGGACGACCCGTCTGCGAGAATG
ATCTTGGATTGGTCGACCACATTTGGTCCACCGCGCATACCCGGCTTCGT
GCACTTTAAAGAAGCTACAGTCCAGTTCTTGTCCAGCGGGCTGGCGCCTG
CAGTGACAGCCGCTGTAGAGTTGTTGATCTCTGTGTGTTGTCCGGCCTCT
TTAAGTTGTAGTGCTCATATAGAGGCTTTCCACACCCGAGCTGGCTGTCT
CACGCACGAGTGGTGTTGTCTCTCATGCACTCATAAACATATTGAAGCTT
TCCTCAACCTGGGGATGCTCTTCAATCATCCCCTTGTTTCTGGGCTCAGA
TTAAACTGTAAATAA
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