mRNA_P-littoralis_Contig635.67.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI) HSP 1 Score: 746 bits (1926), Expect = 2.910e-233 Identity = 683/1176 (58.08%), Postives = 733/1176 (62.33%), Query Frame = 3
Query: 1338 MDADPASSTLLCPSPRGRRRSVDGPLDTKDGHPDSSGGAMRP----TALLESPSRSPRLVTVGNNGVPIVGXXXXXXAGKMMEAEWIANENAH--LAAAGMLPTPSPIASIASVSSVALHPPLSAASSAAAIDRRPPSPSPYPPSPGREYRRAGVIIPQHQQRVTPHSPSPRGAPPXPAQAPGSAGLRQMGTRRLSGGRSTPRGVRWRAGP------GAXXXXXXXXXXXXXXXXXXXXXXXXXXXT------------------YESDYDSDLSELSAYSNYSAIGSLERQLQQDTFFELDESLWRVVTRREICKAEKCVYRNTQTMVSHRKHYHATCSHIHQEGVKKGMRFHHHQLEKVKKHQRSHSTNQARAPRDQGELLSMASPPSMGVVRGRSLDAQSSREGMSSGGEDDEEELPWSAREVELLDALVRNFGSGRWDQVSTHFNNRSPTQCARRWALGGPHGTYGSAPASALSRNTSSSGSSGSLATATGATAVPNGLAGGGAVGVXXXXXXXXXXXXXXXXYGRGVPVAEQNLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMAPSDGTALGGLAAVSPAGSATADGPVARGVLLQQQQREQTGYAVGYSSS--MMRGKGG-VGGVMTTSGGGGMRDGVLPFGSPGGGGA--GSSGRGPKGVGSWTKEEDDRLNALVGMFGVKWSQISDHMPGRVGKQCRERYLNHLDPTLRHGPWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEKNLQRAGSGGSAASERSGAPP----------QPPRHGRTLSSGTAETAAAAALRLGGRPGPGEGQGYRDAGGGGGVVDGGESRSLPPSRVGSYEEQQ--RSMKEAREAAEAGAGLVKLSLTAASAARAALEHSNFDATEGGGRGGIVSGGAIGPGNLHNDRRPPSPPTSPRISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRYSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHPLPPRSPPRTSPPLPSQRSVSG-----GSSGIGIGGGXXXXXPPRSXXXXXXXXSPQHSSGQXXXXXXXXXXLGIPRSPASESFRNANAAGPPLSAPSGARSRQXXXXXXXXAV---DADARRAAVAARMASNGGVAAWAWGGRV 4700
MDADP + CPSPRGRRRSV+G DTKD +SGG P T LLESPSR PRL+ VGNNGV +VG G + ++ ++H A+ G P+ S A H S SA A P PSP+PPSPGREYRRAG ++ R + HSPSPR APP PA APGSAG+R+ GTRRLSGGRS PRGVR R G GA XXXXXXXXXXXXXXXXXXXXXXXXXX YESDYDSDLSE+SAYSNYSA+GSLERQLQQDTFFELDESLWRVVTRREICKAE+CVYRN QTMVSHRKHYHATCSH+HQEGVKKGMRFHHHQLEKVKKHQRSH +NQAR PRDQG S + PSMGV R R LD QS REGMSSGGEDDEEE PWSAREVELL+ALVRNFGSGRWD+VS HFNNRSPTQCAR+WALGG Y + P S LSRN XXXXXXXXX Y GVPVAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXX TA P ARG + +Q GY S +++ KG G LPFGSPGG G GS+GRGPKGVGSWTK+EDDRLNALVG+FGVKWSQISDHMPGRVGKQCRERYLNHLDP+LRHGPWTEEEE+LLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEKNL RAGS GSA S S PP PPRHGRTLSSGTAETA RSM EAREAAEAGAGLVKLSLTAAS ARAALE SNF+ GR G GG +RRPP+ P SPR +R PR+SR+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +P RT PPLPSQR +SG XXXXX XXXXXXXX XXXXXXXXX L IPRSPASE+FRN+ XXXXXXX + DADARRAAVAARMASNGGVAAWAWGGR
Sbjct: 1 MDADPGGPAM-CPSPRGRRRSVEGVFDTKDSS--TSGGGSNPDGTTTRLLESPSRPPRLMAVGNNGVAVVGGGVGGGVGTCF-SPLVSYPSSHGDRASGGR---EYPLRSQA-------HDKFSVTPSANANAMGRP-PSPFPPSPGREYRRAGGVL----SRGSTHSPSPRRAPPSPAHAPGSAGMRRRGTRRLSGGRSAPRGVRSRPGVSKGVYVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYESDYDSDLSEMSAYSNYSAMGSLERQLQQDTFFELDESLWRVVTRREICKAEQCVYRNPQTMVSHRKHYHATCSHVHQEGVKKGMRFHHHQLEKVKKHQRSHCSNQARVPRDQGIASSPSPSPSMGVSRPRGLDNQSPREGMSSGGEDDEEE-PWSAREVELLEALVRNFGSGRWDEVSVHFNNRSPTQCARKWALGGTRPPYPTVPPSELSRNXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPAGGVSYRWGVPVAEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------TASQPEARGPAAARGVLQQRGYPSPTQPSPLLLQRKGSSXXXXXXXXXXXXXXSGALPFGSPGGVGVATGSTGRGPKGVGSWTKDEDDRLNALVGIFGVKWSQISDHMPGRVGKQCRERYLNHLDPSLRHGPWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEKNLHRAGSSGSATSAAS-VPPLPVSATASGGAPPRHGRTLSSGTAETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSMMEAREAAEAGAGLVKLSLTAASTARAALERSNFET----GRAGAGIGGXXXXXXAM-ERRPPTSPISPRSARRSAEPQQQSPRHRQSHGPVPVVS-------------PRFSRAGQQHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSPRYGRHEMAPRRT-PPLPSQRGLSGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLAIPRSPASENFRNSXXXXXXXXXXXXXXXXXXXXXXXXQGMAPEDADARRAAVAARMASNGGVAAWAWGGRA 1113
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE) HSP 1 Score: 706 bits (1821), Expect = 4.490e-214 Identity = 656/1301 (50.42%), Postives = 708/1301 (54.42%), Query Frame = 3
Query: 1191 GTGAGAGEFVYTPLGGAPLQSSRASTPNGGDGPPGGRPPLVRKRSLTVAMDADPASSTLLCPSPRGRRRSVDGPLDTKDGHPDSSGGAMRP----TALLESPSRSPRLVTVGNNGVPIVGXXXXXXAGKM------------------------------------------------------------------------MEAEWIANENAHLAAAGMLPTPSPIASIASVSSVALHPPLSAASSAAAIDRRPPSPSPYPPSPGREYRRAGVIIPQHQQRVTPHSPSPRGAPPXPAQAPGSAGLRQMGTRRLSGGRSTPRGVRWR-----------AGPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTYESDYDSDLSELSAYSNYSAIGSLERQLQQDTFFELDESLWRVVTRREICKAEKCVYRNTQTMVSHRKHYHATCSHIHQEGVKKGMRFHHHQLEKVKKHQRSHSTNQARAPRDQGELLSMASPPSMGVVRGRSLDAQSSREGMSSGGEDDEEELPWSAREVELLDALVRNFGSGRWDQVSTHFNNRSPTQCARRWALGGPHGTYGSAPASALSRNTSSSGSSGSLATATGATAVPNGL------------AGGGAVGVXXXXXXXXXXXXXXXXYGRGVPVAEQNLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMAPSDGTALGGLAAVSPAGSATADGPVARGVLLQQQQREQTGYAVGYSSSMMRGKGGVGGVMTTSGGGGMRDGVLPFGSPGGGGA--GSSGRGPKGVGSWTKEEDDRLNALVGMFGVKWSQISDHMPGRVGKQCRERYLNHLDPTLRHGPWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEKNLQRAGSGGSAASERSGAPPQPPRHGRTLSSGTAETAAAAALRLGGRPGPGEGQGYRDAGGGGGVVDGGESRSLPPSRVGSYEEQQ-----------RSMKEAREAAEAGAGLVKLSLTAASAARAALEHSNFDATEGG-GRGGIVSGGAIGPGNLHNDRRPPSPPTSPRISRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRYSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHP-----LPPRSP--------PRTSPPLPSQRSVSGGSSGIGIGGGXXXXXPPRSXXXXXXXXSPQHSSGQXXXXXXXXXXL----GIPRSPASESFRNANAAGPPLSAPSGARSRQXXXXXXXXAV-DADARRAAVAARMASNGGVAAWAWGGRV 4700
G GAG G+F YTPLG G GRPPLVRKRSLTVAMDADP ++CPSPRGRRRSV+G DTKD +SGG P T LLESPSR PRL+ VGN+GV +VG + M+ EWI NENA A G+LPTPSP+ S+AS + P +++A A+ R PSP+PPSPGREYRR G ++ R + HSPSPR APP PA APGSAG+R+ GTRRLSGGRS RGVR R G XXXXXXXXXXXXXXXXXXXXXXXXXXX LSE+SAYSNYSA+GSLERQLQQDTFFELDESLWRVVTRREICKAE+CVYRN QTMVSHRKHYHATCSH+HQEGVKKGMRFHHHQLEKVKKHQRSH +NQ R PRDQG S + PSMGV R R LD QSSREGMSSGGEDDEEE PWSAREVELL+ALVRNFGSGRWDQVS HFNNRSPTQCAR+WALGG Y + P S LSRN S AG A GV Y GVPVAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXX + LPFGSPGG G GS+GRGPKGVGSWTK+EDDRLN LV +FGVKWSQISDHMPGRVGKQCRERYLNHLDP+LRHGPWTEEEE+LLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEKNL RAGS GSA RSM EAREAAEAGAGLVKLSLTAAS ARAALE SNF+ + G G GG +GGA+ +RRPP+ P SPR +R PR+ +S XXXXXXXXXXXXXXX P + P SP PR +PPLPSQR +SG XXXXX XXXXX P XXXXXXXXXX IPRSPASE+FRN XXXXX A DADARRAAVAARMASNGGVAAWAWGGR
Sbjct: 274 GGGAG-GDFTYTPLGXXXXXXXXXXXXXXXXG---GRPPLVRKRSLTVAMDADPGGP-VMCPSPRGRRRSVEGVFDTKDSC--TSGGGSNPDGTTTRLLESPSRPPRLMAVGNSGVAVVGGGVGACFSPLVSYPSSHGDRAGGGREYPLRSQAHDNLSVRVSGHAMAGGGSNVNPVETKTDSSSAGVGLETAAAGACVSKNPMDVEWIPNENAQ--AGGILPTPSPVTSVASAPPAMVQP----SANANAMGR---PPSPFPPSPGREYRRVGGVL----SRGSTHSPSPRRAPPSPAHAPGSAGMRRRGTRRLSGGRSATRGVRSRPGVSKGVYVGAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEMSAYSNYSAMGSLERQLQQDTFFELDESLWRVVTRREICKAEQCVYRNPQTMVSHRKHYHATCSHVHQEGVKKGMRFHHHQLEKVKKHQRSHCSNQTRVPRDQGIASSPSPSPSMGVARPRGLDNQSSREGMSSGGEDDEEE-PWSAREVELLEALVRNFGSGRWDQVSVHFNNRSPTQCARKWALGGTRPPYPTVPPSELSRNNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSPAGGVS---------------YRWGVPVAEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGA-------PLPFGSPGGVGVATGSTGRGPKGVGSWTKDEDDRLNDLVKIFGVKWSQISDHMPGRVGKQCRERYLNHLDPSLRHGPWTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEKNLHRAGSSGSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSMMEAREAAEAGAGLVKLSLTAASTARAALERSNFETGKAGAGIGGGSNGGAM-------ERRPPTSPISPRSARWSTEPQQQS---------------------------PRHRQSHAPVPVVXXXXXXXXXXXXXXXRQHPQDTCSSGRALSPPSASPPAGSGVGPSSPRYGRHEMVPRRTPPLPSQRGLSGVGXXXXXXXXXXXXXXXXXXXXXXAYTPPXXXXXXXXXXXXXXXXXXXXSAIPRSPASENFRNXXXXXXXXXXXXXXXXXXXXXXXQGMAPEDADARRAAVAARMASNGGVAAWAWGGRA 1497
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.010e-42 Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 3
Query: 3228 GPKGVGSWTKEEDDRLNALVGMFGVKWSQISDHMPGRVGKQCRERYLNHLDPTLRHGPWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRR 3536
G GVGSW+ EED++L LVGMFG KW+QI HMPGRVGKQCRERYLNHLDP+L+ PWT EE+ LL LH ++NN WA+IARQ+PGR DNDVKNRWNL+ RR
Sbjct: 52 GRAGVGSWSPEEDEKLRTLVGMFGAKWAQICMHMPGRVGKQCRERYLNHLDPSLKKTPWTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNRWNLIQRR 154
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: A0A836CND7_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND7_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.670e-35 Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 3
Query: 3234 KGVGSWTKEEDDRLNALVGMFGVKWSQISDHMPGRVGKQCRERYLNHLDPTLRHGPWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEK 3554
+G+GSW+ EED RL ALV + G KW+ ++ MPGRV KQCRERYLNHLDP L+ GPWT EEEQ+LL L N QWAEI RQ+PGRS NDVKNR+NL+ RR + A K
Sbjct: 18 RGIGSWSVEEDARLKALVTVHGCKWALVARSMPGRVAKQCRERYLNHLDPKLQRGPWTPEEEQVLLRLCEGQNRQWAEICRQLPGRSYNDVKNRYNLIQRRLKRASK 124
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI) HSP 1 Score: 148 bits (374), Expect = 9.920e-34 Identity = 131/482 (27.18%), Postives = 180/482 (37.34%), Query Frame = 3
Query: 2136 TFFELDESLWRVVTRREICKAEKCVYRNTQTMVSHRKHYHATCSHIHQEGVKKGMRFHHHQLEKVKKHQRSHSTNQARAPRDQGELLSMASPPSMGVV----RGRSLDAQSSREGMSSGGEDD---EEELP--WSAREVELLDALVRNFGSGRWDQVSTHFNNRSPTQCARRWALGGPHGTYGSAPASALSRNTSSSGSSGSLATATGATAVPNGLAGGGAVGVXXXXXXXXXXXXXXXXYGRGVPVAEQNLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMAPSDGTALGGLAAVSPAGSATADGPVARGVLLQQQQREQTGYAVGYSSSMMRGKGGVGGVMTTSGGGGMRDGVLPFGSPGGGGAGSSGRGPKGVGSWTKEEDDRLNALVGMFGVKWSQISDHMPGRVGKQCRERYLNHLDPTLRHG-PWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAE 3551
T F LD LW VV RR +C A++C YR+ + + R+HYHA C+H+HQ G +KGMRF HHQLEKV+KHQR+H + + + S A P S V R + + A +S + + D E P W+ + L LV G +W ++ ++ T C W +G V+P D ++ KG G+WT EED+RL+ LV + G+KWS ++ H+PGR+ KQCRERYLNHLDP+LR PWTE+EE LL+ L NQWAEI RQ+ GRS NDV+NR+NL+ RR + A+
Sbjct: 112 TPFMLDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQVSAKQNTQRSSIGSSAAKPRSPTTVAAAPRNKRVAAATSGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGP-KWSNIADKMPGKTATACMLHWRVG-------------------------------------------------------------------------------------------------------------------------VNP------------------------------------------------------DHMV-----------------KGSGTWTAEEDERLSKLVEVVGMKWSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNRFNLIQRRNKRAQ 400
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE) HSP 1 Score: 153 bits (386), Expect = 3.920e-33 Identity = 128/480 (26.67%), Postives = 172/480 (35.83%), Query Frame = 3
Query: 2136 TFFELDESLWRVVTRREICKAEKCVYRNTQTMVSHRKHYHATCSHIHQEGVKKGMRFHHHQLEKVKKHQRSHSTNQ-------ARAPRDQGELLSMASPPSMGVVRGRSLDAQSSREGMSSGGEDDEEELPWSAREVELLDALVRNFGSGRWDQVSTHFNNRSPTQCARRWALGGPHGTYGSAPASALSRNTSSSGSSGSLATATGATAVPNGLAGGGAVGVXXXXXXXXXXXXXXXXYGRGVPVAEQNLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMAPSDGTALGGLAAVSPAGSATADGPVARGVLLQQQQREQTGYAVGYSSSMMRGKGGVGGVMTTSGGGGMRDGVLPFGSPGGGGAGSSGRGPKGVGSWTKEEDDRLNALVGMFGVKWSQISDHMPGRVGKQCRERYLNHLDPTLRHG-PWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAE 3551
T F LD LW VV RR +C A++C YR+ + + R+HYHA C+H+HQ G +KGMRF HHQLEKV+KHQR+H Q A PR ++A+ P V S + + + W+ + L LV G +W ++ ++ T C W +G PN + KG G+WT EED+RL+ LV + G+KWS ++ H+PGR+ KQCRERYLNHLDP+LR PWTE+EE LL+ L NQWAEI RQ+ GRS NDVKNR+NL+ RR + A+
Sbjct: 855 TPFMLDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQTSSIGSSAAKPRSP---TTVATAPRNKRVAAASNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGP-KWSNIADKMPGKTATACMLHWRVG----------------------------------VNPNHMV--------------------------------------------------------------------------------------------------------------------------------------------------------------KGSGTWTAEEDERLSKLVEVVGMKWSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRAQ 1138
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: B8BTP0_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTP0_THAPS) HSP 1 Score: 127 bits (318), Expect = 2.500e-30 Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 3
Query: 3234 KGVGSWTKEEDDRLNALVGMFGVKWSQISDHMPGRVGKQCRERYLNHLDPTLRHGPWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRW 3518
KG GSWT EED L G G KWS+I+ ++PGR GKQCRERY+NHLDP L+ G W ++EE +L+++H L N+W I++Q+PGRSDNDVKN W
Sbjct: 1 KGRGSWTTEEDTILVEKRGALGKKWSKIAYYLPGRTGKQCRERYVNHLDPELKAGEWNDDEEAILIAMHKHLGNKWTVISKQLPGRSDNDVKNHW 95
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: A0A1E7EVM5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVM5_9STRA) HSP 1 Score: 127 bits (319), Expect = 4.540e-30 Identity = 55/102 (53.92%), Postives = 75/102 (73.53%), Query Frame = 3
Query: 3234 KGVGSWTKEEDDRLNALVGMFGVKWSQISDHMPGRVGKQCRERYLNHLDPTLRHGPWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRE 3539
KG GSWT EED L +G KW++I+ H+PGR GKQCRER++NHLDP L+ G WT++EE +L+++H N+WA I++Q+PGRSDNDVKN W +R+
Sbjct: 30 KGKGSWTAEEDAILREKRRQYGRKWAKIAAHLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAILIAMHELHGNRWANISKQLPGRSDNDVKNHWYSTIQRK 131
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: A0A835YP08_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP08_9STRA) HSP 1 Score: 127 bits (319), Expect = 5.820e-30 Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 3
Query: 3237 GVGSWTKEEDDRLNALVGMFGVKWSQISD----HMPGRVGKQCRERYLNHLDPTLRHGPWTEEEEQLLLSLHARLNNQWAEIARQIPG 3488
GVGSWT EED++L ALVG++G KW+Q S HMPGRVGKQCRER+LNHLDP L+ PWTE E+ LL+ LH +L+N WA+IAR IPG
Sbjct: 55 GVGSWTPEEDEKLKALVGVYGSKWAQASLFICLHMPGRVGKQCRERFLNHLDPKLKKTPWTEHEDSLLVELHQQLSNSWADIARHIPG 142
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Match: D2UY60_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UY60_NAEGR) HSP 1 Score: 124 bits (311), Expect = 2.730e-29 Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 3
Query: 3243 GSWTKEEDDRLNALVGMFGVK-WSQISDHMPGRVGKQCRERYLNHLDPTLRHGPWTEEEEQLLLSLHARLNNQWAEIARQIPGRSDNDVKNRWNLVCRRERAAEK 3554
G WT+EED+++ LV +G K WS I+ H+PGR+GKQCRER+ NHL+P + GPWTEEE++++ H N+WA+IA+ +PGR+DN +KN WN RR+ E+
Sbjct: 6 GPWTQEEDNQVVELVKKYGAKKWSLIAQHLPGRIGKQCRERWHNHLNPDINKGPWTEEEDRIIYQAHKDYGNKWAQIAKLLPGRTDNAIKNHWNSTMRRKMERER 110 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig635.67.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig635.67.2 >prot_P-littoralis_Contig635.67.2 ID=prot_P-littoralis_Contig635.67.2|Name=mRNA_P-littoralis_Contig635.67.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1550bp MMQQQKQHQENDSSSSSSLAPIASPPAKISSRFSPGSEQLEIDETTCSSQback to top mRNA from alignment at P-littoralis_Contig635:144954..159024+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig635.67.2 ID=mRNA_P-littoralis_Contig635.67.2|Name=mRNA_P-littoralis_Contig635.67.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=14071bp|location=Sequence derived from alignment at P-littoralis_Contig635:144954..159024+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig635:144954..159024+ >mRNA_P-littoralis_Contig635.67.2 ID=mRNA_P-littoralis_Contig635.67.2|Name=mRNA_P-littoralis_Contig635.67.2|organism=Pylaiella littoralis U1_48|type=CDS|length=4650bp|location=Sequence derived from alignment at P-littoralis_Contig635:144954..159024+ (Pylaiella littoralis U1_48)back to top |