mRNA_P-littoralis_Contig635.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig635.57.1
Unique NamemRNA_P-littoralis_Contig635.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: Q94Z07_PYLLI (Ribosomal protein L16 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z07_PYLLI)

HSP 1 Score: 155 bits (393), Expect = 2.810e-47
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 MPTQPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            MPTQPNKTKYRKYFKPRGIPN STKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS
Sbjct:    1 MPTQPNKTKYRKYFKPRGIPNISTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 82
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BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: A0A089N0Z2_PETFA (Ribosomal protein L16 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A089N0Z2_PETFA)

HSP 1 Score: 130 bits (327), Expect = 3.140e-37
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 MPTQPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            M  QP KTKYRKYFKPRG+P +STKTQKL E N FALIA+ESGFLN KQIEAARQNIRRKVKREGKL+IL FPDIAIS+KAS
Sbjct:    1 MLIQPKKTKYRKYFKPRGLPKSSTKTQKLKELNYFALIAMESGFLNGKQIEAARQNIRRKVKREGKLEILVFPDIAISRKAS 82
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BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: A0A4D6E560_9PHAE (Ribosomal protein L16 n=4 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E560_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.340e-36
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1 
Query:    1 MPTQPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            M  QP KTKYRKYFKPRG+PNTSTKT KL E   FALIA+ES +LN +QIEAARQNIRRKVKREGKL+IL FPDIAIS+KAS
Sbjct:    1 MTIQPKKTKYRKYFKPRGLPNTSTKTHKLTELTCFALIAMESSYLNSRQIEAARQNIRRKVKREGKLEILVFPDIAISRKAS 82
[Close]
BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: A0A0U2M402_9PHAE (Ribosomal protein L16 n=18 Tax=Laminariales TaxID=2886 RepID=A0A0U2M402_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 9.810e-36
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:   10 QPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            QP KTKYRKYFKPRG+PNTSTKT KL E N FA+I +ESG+LN +QIEAARQNIRRKVKREGKL+IL FPDIAIS+KAS
Sbjct:    2 QPKKTKYRKYFKPRGLPNTSTKTHKLTELNCFAVILMESGYLNGRQIEAARQNIRRKVKREGKLEILIFPDIAISRKAS 80
[Close]
BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: A0A0U1XD57_9PHAE (Ribosomal protein L16 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD57_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.480e-35
Identity = 67/82 (81.71%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 MPTQPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            M  QP KTKYRKYFKPR IP  STKTQKL E N FALIA+ESGFL  KQIEAARQNIRRKVKREGKL+IL FPDIA+SKKAS
Sbjct:    1 MLIQPKKTKYRKYFKPRRIPKNSTKTQKLKELNYFALIAMESGFLTGKQIEAARQNIRRKVKREGKLEILVFPDIAVSKKAS 82
[Close]
BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: W5RG04_COSCS (Ribosomal protein L16 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RG04_COSCS)

HSP 1 Score: 123 bits (308), Expect = 2.290e-34
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:   10 QPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            QP KTKYRKYFKPRG+PNTSTKT KL+E   FA+I +ESG++N +QIEAARQNIRRKVKREGKLQI  FPDIAIS+KAS
Sbjct:    2 QPKKTKYRKYFKPRGLPNTSTKTHKLSELTCFAVITLESGYVNGRQIEAARQNIRRKVKREGKLQISIFPDIAISRKAS 80
[Close]
BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: V9PA30_UNDPI (Ribosomal protein L16 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PA30_UNDPI)

HSP 1 Score: 121 bits (304), Expect = 9.870e-34
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 MPTQPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            M  QP KTKYRKYFKPRG+PNTSTKT KL E   FA+  +ESG+LN +QIEAARQ+IRRKVKREGKL+IL FPDIAIS+KAS
Sbjct:    1 MLIQPKKTKYRKYFKPRGLPNTSTKTHKLKEITCFAVTTLESGYLNGRQIEAARQSIRRKVKREGKLEILIFPDIAISRKAS 82
[Close]
BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: A0A1I9LW99_9PHAE (Ribosomal protein L16 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW99_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 4.000e-33
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1 
Query:    1 MPTQPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            M TQP KTKYRKYFKPR +PN STKT KL + N FAL+A+ES FLN KQIEAARQNIRRKV R+GKL+I+ FPDIAIS+KA+
Sbjct:    1 MLTQPKKTKYRKYFKPRQMPNNSTKTHKLQDLNCFALVAMESSFLNGKQIEAARQNIRRKVNRKGKLEIIIFPDIAISRKAT 82
[Close]
BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: F8UWL8_9PHAE (Ribosomal protein L16 n=20 Tax=Saccharina TaxID=309357 RepID=F8UWL8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.360e-33
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:   10 QPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            QP KTKYRKYFKPRG+PNTS KT KL E   FA+IA+ SG+LN +QIE+ARQNIRRKVKREGKL+IL FPDIAIS+KAS
Sbjct:    2 QPKKTKYRKYFKPRGLPNTSGKTHKLTELTCFAVIAMGSGYLNGRQIESARQNIRRKVKREGKLEILIFPDIAISRKAS 80
[Close]
BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Match: A0A8F0FCQ4_9PHAE (Ribosomal protein L16 n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0FCQ4_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 8.060e-33
Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 1 
Query:    1 MPTQPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQIEAARQNIRRKVKREGKLQILAFPDIAISKKAS 246
            M  QP KTKYRKYFKPRG+PNTSTK  KL E   F LIA ESG+LN +QIEAARQNIRRKVKREGKL+I+  PD+AIS+KAS
Sbjct:    1 MIIQPKKTKYRKYFKPRGLPNTSTKNHKLTELTCFVLIATESGYLNGRQIEAARQNIRRKVKREGKLEIIISPDVAISRKAS 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig635.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q94Z07_PYLLI2.810e-4798.78Ribosomal protein L16 n=1 Tax=Pylaiella littoralis... [more]
A0A089N0Z2_PETFA3.140e-3782.93Ribosomal protein L16 n=4 Tax=Scytosiphonaceae Tax... [more]
A0A4D6E560_9PHAE7.340e-3679.27Ribosomal protein L16 n=4 Tax=Laminariaceae TaxID=... [more]
A0A0U2M402_9PHAE9.810e-3681.01Ribosomal protein L16 n=18 Tax=Laminariales TaxID=... [more]
A0A0U1XD57_9PHAE1.480e-3581.71Ribosomal protein L16 n=1 Tax=Colpomenia peregrina... [more]
W5RG04_COSCS2.290e-3478.48Ribosomal protein L16 n=1 Tax=Costaria costata Tax... [more]
V9PA30_UNDPI9.870e-3475.61Ribosomal protein L16 n=1 Tax=Undaria pinnatifida ... [more]
A0A1I9LW99_9PHAE4.000e-3374.39Ribosomal protein L16 n=1 Tax=Pleurocladia lacustr... [more]
F8UWL8_9PHAE5.360e-3377.22Ribosomal protein L16 n=20 Tax=Saccharina TaxID=30... [more]
A0A8F0FCQ4_9PHAE8.060e-3374.39Ribosomal protein L16 n=1 Tax=Postelsia palmaeform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig635contigP-littoralis_Contig635:104211..104465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1046714.AMRX01000007_gene2315
Preferred namerplP
PFAMsRibosomal_L16
Model size255
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02878
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue1.77e-10
EggNOG OGsCOG0197@1|root,COG0197@2|Bacteria,1RA0Z@1224|Proteobacteria,1S201@1236|Gammaproteobacteria,466H8@72275|Alteromonadaceae
DescriptionBinds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Cds size255
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791324.725327-CDS-P-littoralis_Contig635:104210..1044651680791324.725327-CDS-P-littoralis_Contig635:104210..104465Pylaiella littoralis U1_48CDSP-littoralis_Contig635 104211..104465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig635.57.1prot_P-littoralis_Contig635.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig635 104211..104465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig635.57.1

>prot_P-littoralis_Contig635.57.1 ID=prot_P-littoralis_Contig635.57.1|Name=mRNA_P-littoralis_Contig635.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MPTQPNKTKYRKYFKPRGIPNTSTKTQKLNESNSFALIAIESGFLNVKQI
EAARQNIRRKVKREGKLQILAFPDIAISKKASHI*
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mRNA from alignment at P-littoralis_Contig635:104211..104465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig635.57.1 ID=mRNA_P-littoralis_Contig635.57.1|Name=mRNA_P-littoralis_Contig635.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig635:104211..104465+ (Pylaiella littoralis U1_48)
ATGCCAACACAACCAAATAAAACAAAATACCGCAAATATTTTAAACCACG
AGGAATTCCAAATACATCGACTAAAACACAAAAATTAAACGAATCAAACT
CTTTTGCTTTAATTGCTATAGAATCTGGGTTTTTAAACGTAAAACAAATA
GAAGCAGCACGACAAAATATTCGACGCAAAGTTAAACGGGAGGGAAAATT
ACAAATTCTTGCTTTTCCTGATATTGCGATAAGTAAAAAAGCCTCACATA
TATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig635:104211..104465+

>mRNA_P-littoralis_Contig635.57.1 ID=mRNA_P-littoralis_Contig635.57.1|Name=mRNA_P-littoralis_Contig635.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig635:104211..104465+ (Pylaiella littoralis U1_48)
ATGCCAACACAACCAAATAAAACAAAATACCGCAAATATTTTAAACCACG
AGGAATTCCAAATACATCGACTAAAACACAAAAATTAAACGAATCAAACT
CTTTTGCTTTAATTGCTATAGAATCTGGGTTTTTAAACGTAAAACAAATA
GAAGCAGCACGACAAAATATTCGACGCAAAGTTAAACGGGAGGGAAAATT
ACAAATTCTTGCTTTTCCTGATATTGCGATAAGTAAAAAAGCCTCACATA
TATAA
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