mRNA_P-littoralis_Contig635.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig635.20.1
Unique NamemRNA_P-littoralis_Contig635.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig635.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig635contigP-littoralis_Contig635:61482..61944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size463
Hectar predicted targeting categoryother localisation
Exons1
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791324.169243-UTR-P-littoralis_Contig635:61481..615071680791324.169243-UTR-P-littoralis_Contig635:61481..61507Pylaiella littoralis U1_48UTRP-littoralis_Contig635 61482..61507 -
1680791324.19464-UTR-P-littoralis_Contig635:61804..619441680791324.19464-UTR-P-littoralis_Contig635:61804..61944Pylaiella littoralis U1_48UTRP-littoralis_Contig635 61805..61944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791324.1812112-CDS-P-littoralis_Contig635:61507..618041680791324.1812112-CDS-P-littoralis_Contig635:61507..61804Pylaiella littoralis U1_48CDSP-littoralis_Contig635 61508..61804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig635.20.1prot_P-littoralis_Contig635.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig635 61508..61804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig635.20.1

>prot_P-littoralis_Contig635.20.1 ID=prot_P-littoralis_Contig635.20.1|Name=mRNA_P-littoralis_Contig635.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
MMVLESILEFCPNKKWGGDLTALWTSEALGITVKLVVPTDMQARKKNEAT
GGQPGGGTGRNGGNRDISRSSRCFRPDKGQSGAYMGKKIVLWTRSLSL*
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mRNA from alignment at P-littoralis_Contig635:61482..61944-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig635.20.1 ID=mRNA_P-littoralis_Contig635.20.1|Name=mRNA_P-littoralis_Contig635.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=463bp|location=Sequence derived from alignment at P-littoralis_Contig635:61482..61944- (Pylaiella littoralis U1_48)
CTGTGAACGCGGGAGCCCTTGTAGAAGATGGTGGAGTCCTTTTTCGCTGC
AAGAAATTCTATTCGCAACCCGTCGTCGAGAAGTATTCGTGCCCCGCTGA
CTCAAGTGGGCTTACTTGTGATGCGGTCGACAACGCCCTCATGATGGTCC
TGGAGTCCATCCTGGAATTTTGCCCAAATAAAAAGTGGGGCGGAGACCTT
ACCGCGCTCTGGACATCTGAAGCGCTAGGCATCACGGTGAAATTGGTTGT
TCCTACTGACATGCAGGCGCGGAAGAAGAACGAGGCAACGGGGGGGCAAC
CGGGTGGAGGAACTGGTAGGAACGGGGGCAACCGCGATATCAGTCGCAGC
TCTCGTTGTTTCCGACCCGATAAGGGACAGAGTGGCGCGTACATGGGCAA
GAAGATCGTGTTGTGGACGAGGTCGCTATCGCTTTGACGGGGGGTTGCAC
ACGCGCGAGTTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig635:61482..61944-

>mRNA_P-littoralis_Contig635.20.1 ID=mRNA_P-littoralis_Contig635.20.1|Name=mRNA_P-littoralis_Contig635.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig635:61482..61944- (Pylaiella littoralis U1_48)
ATGATGGTCCTGGAGTCCATCCTGGAATTTTGCCCAAATAAAAAGTGGGG
CGGAGACCTTACCGCGCTCTGGACATCTGAAGCGCTAGGCATCACGGTGA
AATTGGTTGTTCCTACTGACATGCAGGCGCGGAAGAAGAACGAGGCAACG
GGGGGGCAACCGGGTGGAGGAACTGGTAGGAACGGGGGCAACCGCGATAT
CAGTCGCAGCTCTCGTTGTTTCCGACCCGATAAGGGACAGAGTGGCGCGT
ACATGGGCAAGAAGATCGTGTTGTGGACGAGGTCGCTATCGCTTTGA
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