mRNA_P-littoralis_Contig634.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig634.20.1
Unique NamemRNA_P-littoralis_Contig634.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig634.20.1 vs. uniprot
Match: D7FT84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT84_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 6.640e-116
Identity = 200/319 (62.70%), Postives = 237/319 (74.29%), Query Frame = 2 
Query:  260 MGCATGIAVLCCALASCHAFHIPINTARSAISSRRHCGSTAQQCYRSSSRRPRA-LRMTEEAT-ESQGDAAVVVEEDSAAXAGAKPVGKXXXXXXRPGPNRQDLYKNQPKPPSKKQWTPKEQEYLDKMADAPIIYKRIPEQDFYPSVGYESSYPTLEESLKESYSGDSVVVNEDAKEEILMRVXXXXXXEEEGKFLKNLSEKGAGKLVDGLYALWDPREGELSDTIAKVNLMNVHELGSAKMRKPEEVAKHASFMAANMLVAVGKQPSYGDDYVPQLKKAALEQGLTFIGPELAAEVAKGEMEAFAKLVEATRAALEEE 1210
            M  A   A+ CCAL SC AFH P+ T    +S RR      Q+CYRS  RRPR+ L M +EAT E   DA VV E  + A A +K  G           ++QDLY+ QPKP  K+  TP+EQ+YLDKMA APIIYKR PEQ+FYPSVGYESSYPTLEESLKE Y+GDS+ V ED KEE+LMRV      E EG+FLKNL+EKG GKLVDGLYALWDPREG + +TIA ++L+NVHELG AK + P+EVAKHA F+AANMLVAV K P YGDD+VPQLKKAAL+ G+TF+GP+LAAEVA+G+ME+F KLVEATR ALEE+
Sbjct:    1 MARAARFAIFCCALTSCRAFHTPVTTTSGRMSVRRESSRAQQECYRSG-RRPRSSLSMKKEATAEGVTDAPVVEEGSATATAASKADGTPEKKMM----SKQDLYEKQPKPQKKRTLTPQEQQYLDKMASAPIIYKRNPEQEFYPSVGYESSYPTLEESLKEGYTGDSIAVGEDGKEEVLMRVVVVGGREAEGEFLKNLAEKGRGKLVDGLYALWDPREGPVPETIANIDLINVHELGFAKNQDPKEVAKHAYFLAANMLVAVSKHPLYGDDFVPQLKKAALDNGVTFVGPDLAAEVARGDMESFTKLVEATRKALEED 314
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig634.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT84_ECTSI6.640e-11662.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig634contigP-littoralis_Contig634:103464..108877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2352
Hectar predicted targeting categorychloroplast
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003750.1
Cds size954
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig634.20.1prot_P-littoralis_Contig634.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig634 103723..107738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791323.056365-UTR-P-littoralis_Contig634:103463..1037221680791323.056365-UTR-P-littoralis_Contig634:103463..103722Pylaiella littoralis U1_48UTRP-littoralis_Contig634 103464..103722 +
1680791323.1331725-UTR-P-littoralis_Contig634:107738..1088771680791323.1331725-UTR-P-littoralis_Contig634:107738..108877Pylaiella littoralis U1_48UTRP-littoralis_Contig634 107739..108877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791323.069244-CDS-P-littoralis_Contig634:103722..1040491680791323.069244-CDS-P-littoralis_Contig634:103722..104049Pylaiella littoralis U1_48CDSP-littoralis_Contig634 103723..104049 +
1680791323.0795846-CDS-P-littoralis_Contig634:105564..1056741680791323.0795846-CDS-P-littoralis_Contig634:105564..105674Pylaiella littoralis U1_48CDSP-littoralis_Contig634 105565..105674 +
1680791323.0937936-CDS-P-littoralis_Contig634:106297..1065071680791323.0937936-CDS-P-littoralis_Contig634:106297..106507Pylaiella littoralis U1_48CDSP-littoralis_Contig634 106298..106507 +
1680791323.107288-CDS-P-littoralis_Contig634:106943..1070881680791323.107288-CDS-P-littoralis_Contig634:106943..107088Pylaiella littoralis U1_48CDSP-littoralis_Contig634 106944..107088 +
1680791323.121138-CDS-P-littoralis_Contig634:107576..1077381680791323.121138-CDS-P-littoralis_Contig634:107576..107738Pylaiella littoralis U1_48CDSP-littoralis_Contig634 107577..107738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig634.20.1

>prot_P-littoralis_Contig634.20.1 ID=prot_P-littoralis_Contig634.20.1|Name=mRNA_P-littoralis_Contig634.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=318bp
MGCATGIAVLCCALASCHAFHIPINTARSAISSRRHCGSTAQQCYRSSSR
RPRALRMTEEATESQGDAAVVVEEDSAAAAGAKPVGKGKGKGKRPGPNRQ
DLYKNQPKPPSKKQWTPKEQEYLDKMADAPIIYKRIPEQDFYPSVGYESS
YPTLEESLKESYSGDSVVVNEDAKEEILMRVVVVGGGEEEGKFLKNLSEK
GAGKLVDGLYALWDPREGELSDTIAKVNLMNVHELGSAKMRKPEEVAKHA
SFMAANMLVAVGKQPSYGDDYVPQLKKAALEQGLTFIGPELAAEVAKGEM
EAFAKLVEATRAALEEE*
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mRNA from alignment at P-littoralis_Contig634:103464..108877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig634.20.1 ID=mRNA_P-littoralis_Contig634.20.1|Name=mRNA_P-littoralis_Contig634.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5414bp|location=Sequence derived from alignment at P-littoralis_Contig634:103464..108877+ (Pylaiella littoralis U1_48)
TGTGACCCCGTCGATGGGCCTAGCCTGTAGTTTGCAGACTAGTGTGCCAG
AGAATATGGGATGACAACACAACAACTGCGTATGGTATGCCCTGATAAAA
GTATATAACGAGTCCACTGCCATCCCGTCTGTTAATGTCACGATTCTGCG
GAGACCCGCCGAGAGTGCCGGCCAGTGAGCCTTCCGTCTGAGAGACTCGG
TAGCACCACAGCTGTACTGGGTACGGGAAGCCATCTTTCCACCCACACCA
ATCCTGACCATGGGTTGTGCAACAGGCATTGCTGTTCTCTGTTGCGCGTT
GGCGTCATGCCATGCCTTCCACATCCCAATCAACACCGCGCGCAGCGCGA
TATCTTCTAGGAGACACTGCGGTTCCACCGCTCAGCAGTGCTACCGCAGC
AGCAGCAGACGGCCTCGCGCCTTGCGCATGACGGAGGAGGCAACAGAATC
TCAGGGCGACGCCGCCGTCGTTGTGGAGGAAGATTCAGCCGCTGCTGCAG
GCGCTAAGCCCGTCGGAAAGGGGAAGGGAAAGGGCAAGAGACCTGGACCC
AATAGGCAGGACCTATACAAAAACCAACCCAAGCCGGTATGATGACTCAA
TGATCAACGACCGTAAAGACACGGACGAGCGCCCTCGTGTTCATGCAGCG
GACGAGCGTGTCATGTTTTGACTTTCCCAGTGGAGCACGTGTAACATTGA
GGTGTTCCCGTTTGGGGAGTGTGTGCGTAACACTCCGGTGTGTAGAGCGA
TTTTTCCGTTTGTGGTGTGACTTCATGCTCTTCTGTCTCCGGGTGGGGCG
CTGTTCGTTGGCGCGACCGCTCCTTCTTTATACCTGGTACGAAGTACTTC
GAAGCATATCATACCAGTTTTACACCGTGCTCGCTGTCTTCGGTGGCGTG
CGTATCCGACTGCTGCGTGCTGGCGGTCTGCGAACTACCGGCACTCTGTA
AATGTTGTATCATCAAGAGTCGTACAGCTACACACACGGCGTTTGGATCT
GTACCTGACGAATCAATCCAAGCACTCGCTTGAAACCCGGGGGCCCGTAG
ACGGGTCAGGGCACGCACGCGAACATCAACCTTCCTCAGCTCGCACTCTC
GTTTCTTTGTTCTTAGAAGTACCTGGTACAGTATTAGTTCCACTCGTTAC
ACGAGAGATAGCTACCGGTAAATAAAGAATTCTCCACGGGGCTGCTCTTC
TCTCCGTTGCTGGCTAGTCTGTGCCGACATAGTTGGTTCTCTGCATATCA
GAAAGTCTCCATTGTACTCAATCTAGAATTGATAGGACAGCTTGTAAATC
GTCTCTGCCCATTCTCACCGGTAAGAAGACAACACGAAAACATACCCACA
CACATGTCTACCCGATGGTGCATTGGAACGGTTTGTTAGATTTAGTGTTC
AGCAGTCAACGAACAGGTCTGGTTGTGGCTGTAGGGCTGCAATATGACGG
AAGCAGTATTCCACCGTCGAATGTTAAGATTTGTTTTTGTTATGTATTGG
GCACTCGGTCGCCCCGGTGGTTCAGTGGGTACCCTCGCAACCCTTTGGGC
AATTAGCGAGGTCGTGAGTTCAAACCGATTGTTTCTCACCCAAAAGACTA
GGATTGATTTTCACGTGAGAAGACCCACCAAATTCTACTGGAAAGTATCG
TAGTCTAAATTAGACTGGAAAGATACCGAAGGAACGAACGGTCGAAACCT
TTTCGGTATAAAAATCATTGAGAGCGCCGCACAAGGAAGGTGGAGAAAAA
AAAACGAAAAAACTCCTTTGTTGACCTTTCTCCTGTTTGACCCCGGCTGG
TTCTCCCACACACACATCGGAAGAGGTAGAGCGGCGTCCAGAATTGATGG
AATGACAACACGCACACATTGTTGTCGTCTTCCTTCCCCTAACATTCATG
CTGTTTTTTCTCTCGTCCCCGACCCAGCACGGCTGTTGTGCGTCCTTCCA
CGCTTTTAATTGTATTCAAACGGAGAGCCGAATAAGAGAAAAGCCACTTG
CCTGAGGGCTCACGGGTTTTGTGTACTGAGCCTTGTCCTATCCCCGCCCG
TCCGCCCCCCCGCTCCCTCTCCCCCGCCACGCGCCTACTTCGCGAGAGCA
GCCAAGTAAGAAGCAATGGACCCCGAAGGAGCAGGAGTACCTCGATAAAA
TGGCGGATGCGCCGATTATATACAAGCGCATACCGGAGCAAGATTTCTAT
CCGTCAGTGGGGTGAGTTTCGTTCAGTTTCAATTTTGAGGCGTACACTTT
TCCGTCCATGAAAAAAAAAAACCGCATTGGATGCCTTGGGTATGGAAAAA
TCCAGCAATTACCAATGAAAGAAACATGAGCACGCAGAAAAGAACGAGGT
TCGCTCTTGGGGGCTAAGAAAAATGAGGCTAGCCAGGGCTGTCCTTGACA
CGGCTGCCCTTGACACGGCTGCCCTTGACACGCGTCAGTACCACGTACAC
CCGGAGCCAGAGAAAGTTATTTGTGTGGCCACACCTCGACCCTCCCGACG
CTGCCGTCCGAAGTCGGGCCGTTTGCCGTTGCCATCGTTGCTGTCATGTC
TGCGGGTTTCTGGTGAGGCAGAGTGCATCGTCCTGAGCTCTGTGGGATAA
CTAACCTCCTCCCACTCCCGCTCCGAAGGCCATGAGATGAGCGTAAGTAT
TTTTGTACGTACGACTGCTGTTGTTAAGATACGGGTTTGTAAATATTTCA
AAGAAGTGAAGGGCGCTCAAATGTTGGTGATGACTCCATTATTAGAAGCA
GCGGTGCTGCTGCATTTCAGAAGGGATGTGCTACGTATCAATTGTCGAAT
GACGTCATCCCTAATTCGGCCGATGGCACAACAGGTATGAGAGCTCGTAC
CCCACGCTCGAAGAATCTCTCAAGGAGAGTTACAGCGGCGACAGCGTGGT
CGTGAACGAGGACGCCAAGGAGGAGATCCTGATGCGCGTCGTGGTTGTTG
GGGGGGGGGAAGAGGAGGGGAAGTTCCTCAAGAATTTGTCGGAAAAGGGA
GCCGGAAAGCTCGTGGACGGATTGTACGCGCTGTGGGACCCAAGGCAAGT
TCAGTTCAAGAGAGATAAAGTGTGTTGTAGGGTTTGAGCGGTAGGAGCAT
CGCCGGCCGCCCCGCGGGGGAGGTTTTGACGCCATGTTTATTTTTACGCT
CGCCTTAGACATTCCCTCTCTCTCTCTCTCTTTCTCTCTCTTGTTCTTTG
TCTGGTTCTCTACCTGCCACTCTGTCTCGTCGAAGGAATGCCTCCGGACA
TACGCACAACAGCTGTTCTTTCTCGGACCCCCACACCGAGGCCTCACAGA
ACCACAAATTCATATACTCGTAGGCATGTGGGTACTGTTGGTCTCTGGTT
CGATGTTCCAACCATATGATACCCCGATGTGTTTTTATTATTTATGTATT
TGTTCATTGATAGGATATTATACCGTTGTGTAACACGTGGAGGGATCGTG
CGCGCGCCACTTTGGTTGACGTGCATGCAGGGAGGGTGAGCTGTCCGACA
CCATCGCGAAGGTGAACCTCATGAACGTGCACGAGCTCGGCTCAGCCAAA
ATGAGGAAGCCGGAGGAGGTTGCAAAGCACGCCTCCTTCATGGCGGCGAA
CATGCTGGTGGCCGTCGGCAAGCAGGTGAGAGAGGACGGGAGGGTGGCTC
CAGGGGATTGTCAAGGCCTCTGTGTTTTTGTTGTAGGCGGCAGAGGTTGT
TGTGTTTGTCGGGGACAGCGGGGATTTCCTCCCCTGTAAGTTCAACCGTG
GCCTCTTGAGCAAACTTCGGCAGGCCACGCCAGCCGAAATGCATGCCATT
ATGAGGGACTCTTGTTGTGGCGAGTTGTACTCTTCTCCTCAAAATTACAA
CGTTGTTCCTGGCTTCACATTTGTTGCCGTGTAGAAAGGAAAGGATACGC
CAGCAAGAACAAGCTTGAAACCGCATTGCCCGACTCGTGTAATGCGCAAA
GGCGCACAACCCATGCCATGGAGTGCGATGTTTGCTGCTGTTGTTGCCGA
ACCTGCGTGAAGGTGGATTATTGTGTCGGACTGTGCGGTACTCATGCCCT
CCTCCACGCCCGCCCGCCCGCCCCCCCTCCACCCGCCGCGCGCCTTTCCC
CCGCGATCCTCAGCCGTCGTACGGGGATGACTATGTTCCTCAGCTGAAAA
AAGCGGCCCTAGAGCAAGGCTTGACCTTTATCGGTCCTGAACTCGCAGCC
GAGGTCGCCAAGGGCGAAATGGAAGCATTCGCCAAGCTGGTAGAAGCCAC
CAGGGCGGCGTTAGAGGAGGAGTAACGGGGGACGAGTAGTTAGAGGAAGA
GCTCCGGCTGTTGAATTGAGCAAACCCTTTGTCACTGCCGTATTTGGGAT
GGTGAGAGTTAAGTTTTTTATCTCACCTAAACTGCTCTTGTTGCGACAAC
ATGGTGCAGCAGGTTGCTCAAAACGCTGCTGGTTCGCCTTGCATTCGTAT
TGTTCACATCCCAATTGCTCTGGCAGTGCGTGAGGTTGCCTGCTTGGATA
CGAAACTTTGATGTAGATCATGTTTTCAAGGATCGTGGTCTATATACGTA
GTACACTAGAGGCGTTATTAGAGACAAACGGAATTGTTGCACGCAGTTTT
CTGATCGGTCGAAAAAGGCTTTGGTCGAAAAAATCGTTCGTTACTTGAAA
CCTAACCGTATGACTGACGCTGACGTCAGTCACGGTCGTGTGGTCGTACA
GCACAGGGGCAGTTTTGTTTTGCATACAAATATGCCATACCCGCTACGAT
ATAATGGGATTGGCAACCCTGGTAGCTGTCTCGTGATCATGCCGATAGCA
CAAACAGAAAAAAAAGCACGGAAACATGTATTGCTGCACTACAACAAAGA
CTACGAGGCGGCTTCCACTGGACCATTTGCTCCGTCAATTCCCGACTTGT
GTACAGGGGTTAAGTGCGGGTGTTTGAGTGGAAAGCACGTGGCTGGCGGG
ACGCGCCTTCTCTTCTCTAAGTTGCCACTCGTTCGTATCTTGCTGGGAAA
AAGTAGCCAAGCATTGACCTAGGGATGGATATCGGACGACTCACCAAGGG
AAGTGGAAACGAACTTCGCCTTCAAACTTCGCCGTTTTTCACAACGGATT
ACCATTCAGGCATATGCTTTGTGCTCTTGATGAGTGAAGAGCGCGACTTT
CCGCACGACAAGAGCAGTCATTACTTCCTAACATGAAAAGCACCTGAAAA
TTCGATGACTGTTGGGAAGTTCAAGAGATTGAAGCAAGTAGTGCTGCAAG
GTCCTATCGACAGCAGTAGTAGCAGCCCTCTGCGACTTTCTTGATCCATC
GGACAAGCTCCACTTCCAAAGCAGTGGCCCCTTGGTAAAGCCCTAGTCTT
CGCTTCGAAAGCAGGCACTTCTGCACGTCTTGAGAATGACACGAGCGCAG
CGAATAAAAGCAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig634:103464..108877+

>mRNA_P-littoralis_Contig634.20.1 ID=mRNA_P-littoralis_Contig634.20.1|Name=mRNA_P-littoralis_Contig634.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=954bp|location=Sequence derived from alignment at P-littoralis_Contig634:103464..108877+ (Pylaiella littoralis U1_48)
ATGGGTTGTGCAACAGGCATTGCTGTTCTCTGTTGCGCGTTGGCGTCATG
CCATGCCTTCCACATCCCAATCAACACCGCGCGCAGCGCGATATCTTCTA
GGAGACACTGCGGTTCCACCGCTCAGCAGTGCTACCGCAGCAGCAGCAGA
CGGCCTCGCGCCTTGCGCATGACGGAGGAGGCAACAGAATCTCAGGGCGA
CGCCGCCGTCGTTGTGGAGGAAGATTCAGCCGCTGCTGCAGGCGCTAAGC
CCGTCGGAAAGGGGAAGGGAAAGGGCAAGAGACCTGGACCCAATAGGCAG
GACCTATACAAAAACCAACCCAAGCCGCCAAGTAAGAAGCAATGGACCCC
GAAGGAGCAGGAGTACCTCGATAAAATGGCGGATGCGCCGATTATATACA
AGCGCATACCGGAGCAAGATTTCTATCCGTCAGTGGGGTATGAGAGCTCG
TACCCCACGCTCGAAGAATCTCTCAAGGAGAGTTACAGCGGCGACAGCGT
GGTCGTGAACGAGGACGCCAAGGAGGAGATCCTGATGCGCGTCGTGGTTG
TTGGGGGGGGGGAAGAGGAGGGGAAGTTCCTCAAGAATTTGTCGGAAAAG
GGAGCCGGAAAGCTCGTGGACGGATTGTACGCGCTGTGGGACCCAAGGGA
GGGTGAGCTGTCCGACACCATCGCGAAGGTGAACCTCATGAACGTGCACG
AGCTCGGCTCAGCCAAAATGAGGAAGCCGGAGGAGGTTGCAAAGCACGCC
TCCTTCATGGCGGCGAACATGCTGGTGGCCGTCGGCAAGCAGCCGTCGTA
CGGGGATGACTATGTTCCTCAGCTGAAAAAAGCGGCCCTAGAGCAAGGCT
TGACCTTTATCGGTCCTGAACTCGCAGCCGAGGTCGCCAAGGGCGAAATG
GAAGCATTCGCCAAGCTGGTAGAAGCCACCAGGGCGGCGTTAGAGGAGGA
GTAA
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