mRNA_P-littoralis_Contig634.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig634.9.1
Unique NamemRNA_P-littoralis_Contig634.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: A0A6H5JSZ0_9PHAE (Cytochrome c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSZ0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.570e-49
Identity = 87/102 (85.29%), Postives = 92/102 (90.20%), Query Frame = 2 
Query:  233 STKAGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATS 538
            STK GAKIFKTKCSQCHTVEKDAGHKQGPNL+GLFGR AGT + YSYSTANKTSGV W E +LFDYLLAPKKYIKGTKMVFAGIKK  +RK LIAYLKEAT+
Sbjct:    2 STKLGAKIFKTKCSQCHTVEKDAGHKQGPNLNGLFGRAAGTVDGYSYSTANKTSGVVWTESTLFDYLLAPKKYIKGTKMVFAGIKKPAERKELIAYLKEATA 103
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: A0A835YXF9_9STRA (Cytochrome c n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXF9_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.940e-47
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 2 
Query:  233 STKAGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATSD 541
            S + GAKIFKTKCSQCH VEK AGH+QGPNLHGLFGRTAGT E YSYSTANK+SGV W + +LF+YLL PKKYIKGTKMVFAGIKKAD+R+ LIAYLK ATSD
Sbjct:    2 SAEKGAKIFKTKCSQCHVVEKGAGHRQGPNLHGLFGRTAGTTEGYSYSTANKSSGVVWGDDTLFEYLLNPKKYIKGTKMVFAGIKKADERQDLIAYLKSATSD 104
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: A0A4D9D2B8_9STRA (Cytochrome c domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2B8_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.250e-43
Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = 2 
Query:  233 STKAGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATS 538
            S + GAKIFKTKCSQCHTVEK   HKQGPNL+GLFGR +G AENYSYSTANK SG+ W E +LF+YLLAPK YIKGTKMVFAGIK A DRK LIAYLK++T+
Sbjct:    2 SAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGLFGRQSGQAENYSYSTANKNSGIIWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKDSTA 103
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: A0A7S2SEC8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEC8_9STRA)

HSP 1 Score: 154 bits (389), Expect = 8.220e-41
Identity = 78/106 (73.58%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:  221 LTMSSTKAGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATS 538
            LTMS+ K GAKIFKTKCSQCHTVE    HKQGPNL+GLFGR +G A  Y+YS ANK SG+ W + +LFDYLLAPKKYIKGTKMVFAGIKK  +RK LIAYLKE+T+
Sbjct:   10 LTMSTAK-GAKIFKTKCSQCHTVEAGGAHKQGPNLNGLFGRQSGLAAGYTYSDANKNSGIIWGDDTLFDYLLAPKKYIKGTKMVFAGIKKPAERKDLIAYLKESTA 114
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: CYC_WHEAT (Cytochrome c n=9 Tax=Pooideae TaxID=147368 RepID=CYC_WHEAT)

HSP 1 Score: 154 bits (388), Expect = 1.070e-40
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 2 
Query:  242 AGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATS 538
            AGAKIFKTKC+QCHTV+  AGHKQGPNLHGLFGR +GT   YSYS ANK   V+WEE +L+DYLL PKKYI GTKMVF G+KK  DR  LIAYLK+ATS
Sbjct:   13 AGAKIFKTKCAQCHTVDAGAGHKQGPNLHGLFGRQSGTTAGYSYSAANKNKAVEWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKKATS 111
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: CYC_ORYSI (Cytochrome c n=62 Tax=Mesangiospermae TaxID=1437183 RepID=CYC_ORYSI)

HSP 1 Score: 152 bits (383), Expect = 5.370e-40
Identity = 73/100 (73.00%), Postives = 82/100 (82.00%), Query Frame = 2 
Query:  239 KAGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATS 538
            KAG KIFKTKC+QCHTV+K AGHKQGPNL+GLFGR +GT   YSYSTANK   V WEE +L+DYLL PKKYI GTKMVF G+KK  +R  LI+YLKEATS
Sbjct:   13 KAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: CYC_FRIAG (Cytochrome c n=9 Tax=Spermatophyta TaxID=58024 RepID=CYC_FRIAG)

HSP 1 Score: 152 bits (383), Expect = 5.540e-40
Identity = 72/100 (72.00%), Postives = 81/100 (81.00%), Query Frame = 2 
Query:  239 KAGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATS 538
            K+G KIFKTKC+QCHTV+K AGHKQGPNL+GLFGR +GT   YSYS ANK   V W+E +L+DYLL PKKYI GTKMVF G+KK  DR  LIAYLKEATS
Sbjct:   13 KSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVNWDENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATS 112
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: A0A7S3ZRJ7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRJ7_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.590e-40
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 2 
Query:  245 GAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEA 532
            GAKIFKTKCSQCHTVE    HKQGPNLHG+FGR +G A  YS+S ANK SG+ W E +LFDYLLAPKKYIKGTKMVFAGIKK  +RK LIAYLK+A
Sbjct:   37 GAKIFKTKCSQCHTVESGGAHKQGPNLHGIFGRQSGQATGYSFSDANKNSGIIWGEDTLFDYLLAPKKYIKGTKMVFAGIKKPKERKELIAYLKDA 132
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: A0A7S0C4I9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C4I9_9STRA)

HSP 1 Score: 152 bits (383), Expect = 5.720e-40
Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = 2 
Query:  239 KAGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATS 538
            K GAK+FKTKCSQCHTVE    HKQGPNLHG +G+T+G A+ YSY+ ANK SGV WE+ +LFDYL  PKKYIKGTKMVFAG+KKAD+R+ +IA+LK++TS
Sbjct:   15 KKGAKVFKTKCSQCHTVEAGGAHKQGPNLHGFWGKTSGQADGYSYTAANKESGVTWEDKTLFDYLENPKKYIKGTKMVFAGMKKADERQNIIAFLKKSTS 114
[Close]
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Match: A0A7R9W3U9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3U9_9STRA)

HSP 1 Score: 151 bits (382), Expect = 8.940e-40
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 2 
Query:  245 GAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYSTANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLKEATS 538
            GAKIFKTKC+QCHTVE  AGHKQGPNLHGLFGR AGT   Y+Y+ ANK+SG+ W++  LF YL  PKKYIKGTKM+FAG+KK  DR+ LIAYLKE+T+
Sbjct:   21 GAKIFKTKCAQCHTVEAGAGHKQGPNLHGLFGRVAGTGAGYAYTDANKSSGITWDDDHLFKYLENPKKYIKGTKMIFAGLKKPSDRQDLIAYLKESTA 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig634.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSZ0_9PHAE2.570e-4985.29Cytochrome c domain-containing protein n=2 Tax=Ect... [more]
A0A835YXF9_9STRA4.940e-4780.58Cytochrome c n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A4D9D2B8_9STRA3.250e-4376.47Cytochrome c domain-containing protein n=1 Tax=Nan... [more]
A0A7S2SEC8_9STRA8.220e-4173.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
CYC_WHEAT1.070e-4073.74Cytochrome c n=9 Tax=Pooideae TaxID=147368 RepID=C... [more]
CYC_ORYSI5.370e-4073.00Cytochrome c n=62 Tax=Mesangiospermae TaxID=143718... [more]
CYC_FRIAG5.540e-4072.00Cytochrome c n=9 Tax=Spermatophyta TaxID=58024 Rep... [more]
A0A7S3ZRJ7_9STRA5.590e-4076.04Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S0C4I9_9STRA5.720e-4070.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9W3U9_9STRA8.940e-4071.43Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig634contigP-littoralis_Contig634:32888..39754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT78
Preferred nameCYCS
PFAMsCytochrom_C
Model size2006
Max annot lvl2759|Eukaryota
KEGG rclassRC03151,RC03152
KEGG koko:K08738
KEGG TC3.D.4.6
KEGG ReactionR10151
KEGG Pathwayko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416
KEGG ModuleM00595
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000159,GO:0002931,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006122,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008635,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009628,GO:0009629,GO:0009636,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010310,GO:0010604,GO:0010646,GO:0010647,GO:0010727,GO:0010728,GO:0010730,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016999,GO:0017144,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0019899,GO:0019953,GO:0020037,GO:0022412,GO:0022414,GO:0022603,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034349,GO:0034465,GO:0034599,GO:0034641,GO:0035556,GO:0042221,GO:0042493,GO:0042743,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043457,GO:0043467,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0045155,GO:0045333,GO:0045595,GO:0045862,GO:0046034,GO:0046483,GO:0046668,GO:0046669,GO:0046688,GO:0046906,GO:0048037,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051186,GO:0051193,GO:0051195,GO:0051239,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0060284,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070887,GO:0071704,GO:0071840,GO:0072521,GO:0072593,GO:0080090,GO:0097159,GO:0097190,GO:0097193,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901857,GO:1902494,GO:1902531,GO:1902533,GO:1903293,GO:1903426,GO:1903427,GO:2000026,GO:2000027,GO:2000116,GO:2000377,GO:2000378,GO:2001056,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons2
Evalue2.89e-59
EggNOG OGsCOG3474@1|root,KOG3453@2759|Eukaryota
Ec32 ortholog descriptionCytochrome c
Ec32 orthologEc-06_003800.1
Descriptionelectron transfer activity
Cds size318
COG categoryC
BiGG ReactioniMM904.YJR048W
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791322.4879987-UTR-P-littoralis_Contig634:32887..343491680791322.4879987-UTR-P-littoralis_Contig634:32887..34349Pylaiella littoralis U1_48UTRP-littoralis_Contig634 32888..34349 -
1680791322.5274813-UTR-P-littoralis_Contig634:39528..397541680791322.5274813-UTR-P-littoralis_Contig634:39528..39754Pylaiella littoralis U1_48UTRP-littoralis_Contig634 39529..39754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791322.504316-CDS-P-littoralis_Contig634:34349..345981680791322.504316-CDS-P-littoralis_Contig634:34349..34598Pylaiella littoralis U1_48CDSP-littoralis_Contig634 34350..34598 -
1680791322.5155077-CDS-P-littoralis_Contig634:39459..395281680791322.5155077-CDS-P-littoralis_Contig634:39459..39528Pylaiella littoralis U1_48CDSP-littoralis_Contig634 39460..39528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig634.9.1prot_P-littoralis_Contig634.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig634 34350..39528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig634.9.1

>prot_P-littoralis_Contig634.9.1 ID=prot_P-littoralis_Contig634.9.1|Name=mRNA_P-littoralis_Contig634.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MSSTKAGAKIFKTKCSQCHTVEKDAGHKQGPNLHGLFGRTAGTAENYSYS
TANKTSGVKWEEGSLFDYLLAPKKYIKGTKMVFAGIKKADDRKLLIAYLK
EATSD*
back to top

mRNA from alignment at P-littoralis_Contig634:32888..39754-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig634.9.1 ID=mRNA_P-littoralis_Contig634.9.1|Name=mRNA_P-littoralis_Contig634.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6867bp|location=Sequence derived from alignment at P-littoralis_Contig634:32888..39754- (Pylaiella littoralis U1_48)
GCGAAAGTATCGTCGCGCGAGGGGGAGTTTGGTCGATCAGGAGATGATGA
CGTAAGCACGTAAAAACGTCAAAACGTTTCAGATGGTGTTGGAAGTTGGG
AGGCGTCGCCTCCAAAAGAAACGGCCGCGGTGTAGCCCCTAATTGCTGCG
TCGGTACTCATCACATCACCAAACGAAGGAAGACTGCTCAATACCCCGGA
AACAGGCACCGACCGCAACGTTAACTATGTCTAGCACCAAGGCAGGAGCG
AAGATCTTCAAGACCAAGTGCTCGCAGTGCCACACTGTCGAGAAGGTATG
CAGTTCGGTATCGACATGAAGTAGTACCCAATGTTTTGGCGGTCCGTTCT
CTAGAACGATTTCTGTCCTCATTTTCTTTTGGTCGAACTGCCGCCCCTCT
CTGCTCCATTGTTGTAGCGCGGGGACTTGTCTGTGCTGTTTCAGCCCGGA
TGGTGACTGAGGAAGACATAGACGCCCAGAAGCATGGCACCTGCATGCTA
CTTTGCTTGCTTGTTGATACTAACAGTTGGCGTACCCTCTTGCGGTGAGG
TGTGTTGCCGCTGTTCCTTCCGAAAATACAGAGTGCCCGGAGGTTCTGAA
AAAACCTGTTGGCAGAGGGCCTCAGGTACCCAGTGGCTGACGCACCCGGC
TGTCACAACCCAAGAAACGGTTTCCCCTGTGCGCACGAGTCAGCAGCGTG
CAAACCTCCAGGAATAAGAAGTCTCTCTTCAGCTCTCCTGTACGCAAGTA
TCCTCATCTTGGAGTTGCAGCATTGGCAGCAGCAGTAGCGGCAGTCCAAA
CCACACCTCCTAACGTTATAGGACAATCACAAGAACGATTTTCCGCTCAC
CATCAGTCTGTCCCCTCAAAAACGAAAGCGAGCCATTCGCGTAAAATTGC
AACGTACCCGTGCAATTCCAACTATACATGGTACTCGTACGAAACTGCTG
TCCGATAACGCGACAAACTCAAGGTACCTTTGTATATTAGCTCCACACAC
GAAGGTTGTAACTGGGATTTTGATTGGTCTCTTGCACGCCCCTTTAACCG
GTTGCTCCGGTAGTTCACGTGTCACCCGACACACTTGGAAGCGAGTCTAA
TGGTCAACATTTTGACGACAGTATATCAAGACCTTTTTCAGCGCCAGTAG
ATCAGATGATTTCCACGTGTAAAATGCACAGAGTGATTTGTTCTCATATT
TGGACTTTACGAAAGACATCACACCTCCGAAGTCTACCTCGCACTGCTGC
AGTCGGCCCCCTACAACTCTTGTCCGAGTTCAACGATACCGATACTGCTG
TCTGTACTCCTATTAAAGATGACCCCATGCACCATACACGAGGAAGCTCG
AAGGGTTCAGGGAGAGGAATCACTATGCGTGACCCAACTGGTGTACGCTC
CCGTTCCTCAAAAGACTACAGCAATACTGCTGTGTACTCCGGAGTATGTG
AGCAACTTATCAATTTTTTCGCTTGAAAGTAGAATTCGCGTTTCCAAGGA
CACTTGTACCCTCGATTAGGATACCAGACGGGGACTCGGATGTGTCCTAC
AAAACGATGTTATCTCCTTCTTGCACCGGAGTACCGGAGTAGGTACCTCT
TTTTCCTCTTTGTACATACAAACAATAATTATCGTCTGAGTTGACCCTTC
CTGTCTGAGTAACCACAGACGGTGCGAAAACGTACACCGGAACTTGTAGA
CTGGCATCGAAAACAGGTGGGTTGACACCACACGCACACGTCATGCTGTC
GACCCAGGAATGCATTGGCTATTAGCAGTCTCCGGACTCTCCCTATTAAA
TGAGGATGTAGAGGAGACAAGCAACGGACACGAAGTGTGTTTCCACGTCA
GCTGAAGTGACTCGAAACGGCTCGAACTCGAAGTATTCCGCCGCAAAAGT
CCAGCTCATTTTTTCCATTTTTTCGCCTCACAAGGACACAGGCAGACACA
CTACTCGTACTCTTGTGTACCTGATATATGACGAATGAGAGCAAACACCG
CAATATTCATATACATACGAAGTATTACTTGTAGTGTGTTTGCGAAAAAA
GAAGTATGATTCAAACATCCTTTTTGAGGTTCCCCCGAGAGGCTCCTTGA
TTGCAACGAAATCCGTTTTTGAAGAGCAAATCAGCAAAATAAAGCCGAAG
AAAGGATGTTTGAAAAAGGATATCTGATCTGCCAAGTGGGTCAAGCCGCC
TCACAACGCGATTGGTCAAGTCCATCCGGCATCACACACGAGAGGTGGCT
GTTGGCTGTGCCCTTGTTTTTTCTCACAACCACATACAGCGAATCTAGGC
AAAACCCTCGGGTGGAAGAGCAGCGAGCCAGGCCAAACGTAGGTAGTTGG
AGACAAGATGGTCAGGAAGAGGCGCCACATCAGACAAGTCTAGATCAATC
GGCGCTACGGCGCCCTTTCTGCGGTTGAGCGCGTACGGATTAAGCTGCTG
CTTCGGCATGCGCTGGCGCTGTTTGTCTCAGCGGAGAGTCAAGAGGACGA
GGACGAGGCGAACCTATTCAGGCATGTAGGTGCCATGGTCGTCATGCGTG
TTCAGCGGATGAGGCGGGACATGACGGTGCTGCCGCCGACCATCCGCGGA
AGGGCGCCCGCCATCTAAGACATCATTGTCAGCGAGGCACGGACCAACGA
CAGGAGCCGCAGGGCGGAAATGCGACACGTTGCTCTGATGAGAGACTGTT
GTTGCTGTGTTACGTAGAGGTGGACCGGTCGGTAGCCTGGAGGGCGGAAG
GAGGGGGTACTCTGTTGTTGTGATTGAGAGCCTCTTATTATTACATTAAC
CCCCATAAAAACTAATCTTTTTTCGCATACCTTTTCAAGAATTTCCTTTG
TTTGCGGGGTTAAAATTACCGTACTTTTTTATATAATTATTCAGAAAGTA
TATTTGCCAAGTCATATTTCTTTTTTCGCAAACACCCTTTTGTATTTTGC
CAACATGTTCGATATGAAGTTACGAACTCGAACGATCCCATTCCGGAAAT
GGGCGTGCTAGATTTGCATTATTGCTCACCTCGTAAATATTTGTTTGTCT
GTTGGGTTGTAGAAACACAAGTAGGTGTATCGCTCGCTGCGTTTGTTTCT
AATCTCGCTGGATCCTCGTCTAGGGAGAGGCGAACACATCGATGTCTTAA
TAAGAAAGTTAAAAAAATTATTCTTCGAAACAATTTTATTTTATTCTTTG
TGTTCGTTGCAATATCTGCTACAAATCCTTCTCTAGAGAGAGGCAAACAC
ATTAATGTTTCTGTAAGAAAAAAAAACAAACAATAAAAATACTGCTGTAC
AACGATAACAATGACGGCCAGGGATAACGCTAACAGCAGTACACATATAC
ACTGTAAACACTCAACACATGATGTAACGTTCGTCACACAAGACGACCAC
CAGATTGTCTTGTTGATAACAACACAAAGTACGAAGCCACACTGTACTCC
CCCTCCAGGAGACCCGTGTATATATTTTCTGAACATGGTATTTCGAAGAT
TTTTTTTTCTTTCCCAAATGGGTCAAGCTTCCAGATAAAAAGCAGCAGTT
GTGTGCCCCCGCTGACTGCCGTACGCTCCCCTCCCACCCCTACCCCATGC
AGCCTTAGGAGGCACAAACCTCTATAGATTTTTTTAGATCTCCCATCAGT
TTGAACTCCTGTGTGGATGAAAACTGTGCCCGACCCCCGCATATGCCTTG
TAGCTCGAGATCGAGGTGCCCGGCATGATCGCTTTGAGCACCATTTCGCC
GAACGGGTTTTGGCGAAAAACACCGCAGAAACTGTGCTTCAGTCACGGAC
ATTTTCCGCTCGTCACAAGCAACCTCACTGCTTCAAATTGCCGGAGCCTA
CTGATGTGTGTGAGTGGCGTCTCGCGTTAACAGCAGCAACGCGCAGCCAG
AAATATTTTAGAGGTACTCGTCATGTGTACTACATCTGGAGACCTGCATC
AGCCCGAAATTGCACCAAAATGGGAGACATGCCGGTGCGTTTGCGCGATG
CCACCGTTCTCCGCAGGTATAGCCCCGACCAACATGGAAATTGGACGCGA
AGGTAGCTGGCTTACCGGGCAATATCTGAAAAGCCAATAACCTTAAGAGA
TTCGGAATTGGGCGGAGTTTATTTTTTCAATCTGCGGCCCAAAAAGCCAC
TACAAAAGAAGGCGTTTTTTAAATTAGTTTTTGGACTCCCTCCAAACAAA
GCTACTTTTGTGCAAAACCCCCGACTCTATATTCAAGTCATTTGGTTCCC
GGTTGCAAAATGCTACCACCTGCCACTTCTTTACAAACCCGGTTTCTTAT
TATACTGAACACAGGGTGGCCTTAAGGACAAGTAGAAACAACACAACTGG
TATAGATGTATTTTCATTGCGTTTGTTGCCAGTCTACTCTAGATTCTCGT
CTCGAGAAAGGCGAACACATTGATGTGTCTGTAGAGGAAAAAAATACATC
AATTTACAATTTACGAAACTACACGAAACGACTCCCGCTTCTCATCTCCC
TCCGCAGTACGCGTTTACTGGTGCGCTCTCATGTCGTTTTGTCCGATCGC
ATCGTTTAGTTTGCGCCAATTTTCCGTTGTGGAAGGAACAAACTATGCAT
TGAACAAAAAAAAGGAAATTTGAAATCTAATAAAAAGTGCCATCGTGGGA
AGTTTTTCTTCTTGGTGCAAACGCTGACAGATTTTCAAACGTTTGTCAAC
GCTTCGTCATCGTTTTCGACGCCACTGCTATCCTCATCTTCTGTCACGAG
CATATAGTGCTCGAAGGGGATGTTGGGACGGTGTGCTGCGGCCTTTGGCC
GTCCTACTGGAAGATTTATCGCCGACCGAAGCAAAGGGGTCACACACTGT
TTTTCATTTTTTTTCTGTCGATGACGACCTTCAGGCCGCAACAAACCGCC
CCACCTTGTCCTTTCGCCGCCGGATGCTCGTGTCACTAGACGAGAGCGAT
TGCGTCGAAATTGAAATTGATGGCAGACCGGTGGTGGAAAAACTACCTTG
CCCCCGTTGGCAGACTCGTCGAAAAAGTACTGAAACAATGTGGAAGTGAC
CCCAAAGATGTAAAGTCAAAAGTTATGACATCATGCCTGTGGTAATCCAT
GACCCCTTCGTTTCTTGTTTTGGTTTGTTCCACCTCCACCCATCAACAAC
GACCAGGACGCGGGCCACAAGCAGGGGCCCAACCTGCATGGCCTGTTCGG
GCGCACGGCGGGAACCGCGGAGAACTACTCGTACTCAACCGCCAACAAGA
CCTCGGGCGTCAAGTGGGAAGAGGGCTCGCTGTTCGACTACCTGCTCGCA
CCAAAGAAGTACATCAAGGGAACCAAGATGGTTTTCGCGGGCATTAAGAA
GGCAGATGACCGGAAGCTGCTCATCGCGTACCTGAAGGAGGCCACATCAG
ACTAATTTTTGTCTAGGTTACGGAGGTATCATTCGACGTGTACCTCTTTT
TTTCAATTTTTTTTCGGTCTCGCACGCTTTTTAGTCCTGGGGAGTTCGTC
CGTGAGGAGCTTCGGGTGGCGATAGCGGGGAGGAGGAGAGGCAAATGGAG
CGTTGGGAGTGCCAGCACTAGCACGGAGGGGGTTGCGGGGGCGGCTGGGA
GGAATGAAAGATGAAGGAGCTGATGCGATGATTCGAGTGCATGGGAGGTG
GCACAGACGGGGCTCTCGGCAAAACCCTGGCCGAAACCCTGGTTGGCCTT
TTTTTTCGTAGCGTGGGGCCGTGGGAGGGCAAGGAGAGGTAACTTTCACT
GCCGTGTGAACGTAGAAGGATGAGTGAAAGAACATGTGTCGGTCATGGCA
TGAGTCGGATAAGAGGGTGCTGTGCTGCAACTTTTCTGCCGCTGTTGGAA
GTTCGATTGATTTTTGCGATCTCCTTTTCAATCAATCTTTGGCAAAATAT
TGTGCACGTAACCGACATTTTTTGTATTTTCTTGGTCCATCTGAAGCGAG
CAAAAAGGAATGCCGGGCATCAACTTTGTAACGTTTTGCATCACCACTTG
CGAAGGCGTGGTTCTTGTTTTTTTTGTGTGGACGTGAGACCGTGCGCAGG
TGTGTCTTCTGGTATCCGCTCGGTTATTCCTGCGTCTACGAGTCAACTCT
CCTAATTGTTTCTGAGGCGCGAGCGAGTGGCTGACCGAAAGGAGTGGAGG
CAAAATCACTGCAGCAATCCCTAACTTGGCGACGAATTCCGGATTTCCGT
CAGTTTATTTCGGGGGCGAAGCTTGTTTTCTGTCTCATGTACAGCAGTCC
ACGAACTGCAGGCAAAAGTGGGCAGAGTTCCACGTCGGTTGCCTTCACCA
CCACCCTTGCTCGGGTTGCCCTGTTTTCCATCGCTGTATGGCCTGTATTT
GTACTAGATGTTGCGTACCTGTAGCGCGTTTTTGGTAGCGGGGCAGTTGT
CTACTCCAAACAGCAGCGGGGAGTGACTGCGGGTGGGTGTGTGGGTAGAT
GGGTTGAGGTATCAATACAAGTACCAAATGTGTTCCTTTGTTCAGTGTTT
TGATCAGGCGGTTGTCATGCTGCTCTCCTTGTAGGTGCTGTTCGATGGTT
AGCCGCGAGTTATATTTCGTTGTTGTTGGCGTTTTCAATGGTTATGATTT
GTTCTTCTGATGTTTCCACCCTGCGCCTTTACCATAACGTTGCCCAGCCC
CCGTTGAGCGTGGAGGCGCACAGACTGAACGCCCCAGCTGTCAGGGATAG
CACACACGACGGGCAAAGATTTTATATCGCAACACAGGAAATAAATAATA
CGGAGTACTTCGTACGAAGTACGTTGAGAGTACGTGTCCGGAGCGCAAGG
GAGTGGTCAGTACACCCAACAAACCACAAAGTCATTCGTTTTCTGATCAG
ATGATGCATGGAGCGGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig634:32888..39754-

>mRNA_P-littoralis_Contig634.9.1 ID=mRNA_P-littoralis_Contig634.9.1|Name=mRNA_P-littoralis_Contig634.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig634:32888..39754- (Pylaiella littoralis U1_48)
ATGTCTAGCACCAAGGCAGGAGCGAAGATCTTCAAGACCAAGTGCTCGCA
GTGCCACACTGTCGAGAAGGACGCGGGCCACAAGCAGGGGCCCAACCTGC
ATGGCCTGTTCGGGCGCACGGCGGGAACCGCGGAGAACTACTCGTACTCA
ACCGCCAACAAGACCTCGGGCGTCAAGTGGGAAGAGGGCTCGCTGTTCGA
CTACCTGCTCGCACCAAAGAAGTACATCAAGGGAACCAAGATGGTTTTCG
CGGGCATTAAGAAGGCAGATGACCGGAAGCTGCTCATCGCGTACCTGAAG
GAGGCCACATCAGACTAA
back to top