mRNA_P-littoralis_Contig634.7.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Match: D7FT79_ECTSI (Mitochondrial import receptor, Tom22 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT79_ECTSI) HSP 1 Score: 207 bits (526), Expect = 7.360e-63 Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 3
Query: 240 MPKKLTFNDEEKDNRPGVLQGLLVTGRSLGVAGFGWAQWAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQLVEQEQIHINALLAEGKTRQEIAQMGLYSALDPNVMGPEAS 575
M KKLTFNDE++DN PGVLQ L+VTGRSLGVAGFGWAQWAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQL+EQE+IHINALLAEGKTRQEIAQMGLYSALDPNVMGPEAS
Sbjct: 1 MAKKLTFNDEKRDNGPGVLQTLVVTGRSLGVAGFGWAQWAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQLIEQEKIHINALLAEGKTRQEIAQMGLYSALDPNVMGPEAS 112
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Match: A0A7S3HMU8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMU8_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 4.000e-10 Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 3
Query: 333 AGFGWAQWA-AKKTGR-TGWVLLTTAVVTLVPLVFEITREAQLVEQEQIHINALLAEGKTRQEIAQMGLYSALDPNVM 560
A FGW W GR GW ++TT ++T VPL+FE+ RE+ L + EQI I LAEG+T QE+A GL +A++P V+
Sbjct: 31 AEFGWNSWLWIYANGRMVGWFIVTTGMITAVPLLFEVKRESILEDLEQIQIGKQLAEGRTPQELAFEGLTAAVEPKVL 108
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Match: A0A7S0BZI4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZI4_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 3.320e-8 Identity = 26/62 (41.94%), Postives = 44/62 (70.97%), Query Frame = 3
Query: 345 WAQWAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQLVEQEQIHINALLAEGKTRQEIAQMG 530
W WAAKK+ R G+V+ TT++V L+PL+FE+ RE Q +E E+ H L ++G + +++ ++G
Sbjct: 35 WGLWAAKKSARVGFVIATTSIVVLMPLIFELAREGQSLEVERAHSKDLKSQGYSERQLQELG 96
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Match: A0A6T7HAY7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HAY7_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 4.420e-8 Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 3
Query: 279 NRPGVLQGLLV-TGRSLGVAGF---GWAQWAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQLVEQEQIHINALLAEGKTRQEIAQMG 530
N+ G ++G L G+S V G W W AKK+GR G++L TT++V L+PL+ EI REAQ +E E+ + L ++G +++ +MG
Sbjct: 8 NQAGGIKGFLQRAGKSFQVGGLLAKDWGFWLAKKSGRIGFILATTSMVVLMPLMLEIGREAQGLEVERSQVKDLRSQGYADRQLQEMG 95
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Match: A0A7S0SSA7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSA7_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 6.190e-8 Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query: 381 GWVLLTTAVVTLVPLVFEITREAQLVEQEQIHINALLAEGKTRQEIAQMGLYSALDPNVM 560
GW ++TT ++TL+PLV E+ RE ++ + EQ+ I + LAEG + QE+A GL SAL P V+
Sbjct: 51 GWFIVTTGMITLLPLVLEVKREGEVEKLEQLQIQSRLAEGISPQELANNGLTSALPPKVL 110
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Match: A0A7S3LEZ8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEZ8_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.650e-7 Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3
Query: 288 GVLQGLLVTGRSLGV----AGFGWAQWAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQLVEQEQIHINALLAEGKTRQEIAQMG 530
G ++G L LG+ G QW + G+ ++L TT++V L+PL+FEITREAQL+E E++ N L ++G +++ +MG
Sbjct: 9 GGIKGFLQKTGQLGIWTYEKGTTVVQWTYRYGGQAAFILATTSMVVLMPLLFEITREAQLIETERLEANDLRSKGYADRQLKEMG 93
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Match: A0A7S2SD82_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SD82_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.950e-6 Identity = 31/90 (34.44%), Postives = 56/90 (62.22%), Query Frame = 3
Query: 273 KDNRPGVLQGLLV-TGRSLGVAGFGWAQ---WAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQLVEQEQIHINALLAEGKTRQEIAQMG 530
K + PG ++G L GRS G + W ++K + G+V+ TT++V L+PL+FEI RE Q++E E++ + L ++G + +++ +MG
Sbjct: 6 KASSPGGIKGFLSRAGRSFYAGGIFAKEKSLWLSEKMLKVGFVIATTSLVVLMPLIFEIAREGQMIENERVVVKDLRSQGYSDRQLGEMG 95
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Match: A0A835YN34_9STRA (Six-hairpin glycosidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN34_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 4.140e-6 Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = 3
Query: 246 KKLTFNDEEKDNRPGVLQGLLVTGRSLGVAGFGWA----QWAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQLVEQEQIHINALLAEGKTRQEIAQMGLYSALDPNVM 560
+K +D + D G L+ + + +G + W+AK GRT W++ TT ++ + PL+ EI RE Q++E E++ + LLA+G Q I +MGL DP V+
Sbjct: 4 RKRLDSDSDTDEAKGGLRRFVDSTIGVGTKTLDYGLKIFHWSAKYGGRTLWIVGTTTLMVVFPLMLEIEREQQIIEIEKLQVKDLLAQGVHPQRIHEMGLSLPRDPAVL 112 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig634.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig634.7.1 >prot_P-littoralis_Contig634.7.1 ID=prot_P-littoralis_Contig634.7.1|Name=mRNA_P-littoralis_Contig634.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp MPKKLTFNDEEKDNRPGVLQGLLVTGRSLGVAGFGWAQWAAKKTGRTGWVback to top mRNA from alignment at P-littoralis_Contig634:27062..32930+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig634.7.1 ID=mRNA_P-littoralis_Contig634.7.1|Name=mRNA_P-littoralis_Contig634.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5869bp|location=Sequence derived from alignment at P-littoralis_Contig634:27062..32930+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig634:27062..32930+ >mRNA_P-littoralis_Contig634.7.1 ID=mRNA_P-littoralis_Contig634.7.1|Name=mRNA_P-littoralis_Contig634.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig634:27062..32930+ (Pylaiella littoralis U1_48)back to top |