mRNA_P-littoralis_Contig634.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig634.12.1
Unique NamemRNA_P-littoralis_Contig634.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig634.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig634contigP-littoralis_Contig634:39929..41221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size526
Hectar predicted targeting categoryother localisation
Exons3
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791322.0034583-UTR-P-littoralis_Contig634:39928..399981680791322.0034583-UTR-P-littoralis_Contig634:39928..39998Pylaiella littoralis U1_48UTRP-littoralis_Contig634 39929..39998 +
1680791322.021774-UTR-P-littoralis_Contig634:40193..402011680791322.021774-UTR-P-littoralis_Contig634:40193..40201Pylaiella littoralis U1_48UTRP-littoralis_Contig634 40194..40201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791322.0328925-CDS-P-littoralis_Contig634:40201..405191680791322.0328925-CDS-P-littoralis_Contig634:40201..40519Pylaiella littoralis U1_48CDSP-littoralis_Contig634 40202..40519 +
1680791322.0439918-CDS-P-littoralis_Contig634:41092..412211680791322.0439918-CDS-P-littoralis_Contig634:41092..41221Pylaiella littoralis U1_48CDSP-littoralis_Contig634 41093..41221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig634.12.1prot_P-littoralis_Contig634.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig634 40202..41221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig634.12.1

>prot_P-littoralis_Contig634.12.1 ID=prot_P-littoralis_Contig634.12.1|Name=mRNA_P-littoralis_Contig634.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MIDVSSGDDGRGGSDPRLCDIDGDCDGPLRVSTEDASVRKSSDQEAENHR
ADLAEIASMRNMGRRYSESPNINEPRERGWLSPPVNSTEVDATTEPPAED
AGQSGEVLKFFRQVNKGSYLLKPMGGKSVRGCGDCLVDTLASLTRKLRS
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mRNA from alignment at P-littoralis_Contig634:39929..41221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig634.12.1 ID=mRNA_P-littoralis_Contig634.12.1|Name=mRNA_P-littoralis_Contig634.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1293bp|location=Sequence derived from alignment at P-littoralis_Contig634:39929..41221+ (Pylaiella littoralis U1_48)
CGGCCCGTTGTCCTCGCGTGCAGCTACCGGTAATACGGCTGCTACTGACT
GCGCTGTGTTTTGTTGTGAGGTAGGCGCATGTATTCAGTCATATAGAAAA
ATATCAGCCCGTATGCCGTGCCGTTGTCGCACATCAGTATAAAACAACTC
GTGATTGTAACGCAGGCAGAATCGGCCGTATAGCATTATACTGTACGTAA
TTCTGGTATGTGTATGTCATAACGTTCCCTCGCGCGCTTGGCACCGCCGT
GCTTGCTTGGTACAGCCGACAGCATGATTGATGTTAGCAGCGGTGACGAC
GGGCGCGGTGGCTCTGATCCTCGCCTGTGCGATATTGATGGTGATTGCGA
CGGGCCTCTGCGTGTGAGCACCGAAGATGCCAGCGTCAGGAAGAGCAGCG
ACCAGGAAGCGGAGAACCACAGGGCAGACCTAGCAGAGATTGCTAGCATG
AGGAACATGGGTCGGAGGTATTCGGAAAGTCCGAACATCAATGAACCTCG
TGAGCGCGGGTGGCTATCACCTCCCGTCAACAGTACGGAAGTCGACGCGA
CGACTGAACCGCCTGCGGAGGACGCGGGTCAGTCTGGAGAGGTACGAAAC
TGTAAGCAGTATGTATGTGTTACAGGGTTTGTTTGTATCGACTTCGTGTG
TTGACTGGTACCTCCCACGTGGTAGTAATTAGCCATGCATACATCAGTGC
GGTATGGAGGTAAGTGTTATACAGTAAGCGAGCAGGTTCCAAAGAAAAAT
TGATGCGAAAATGCGGTGAGCACAAACACGCCATGTCGGTCCTTTTTCCT
GTAAGTATACTGTAAAGTCGGCAGTGTTGTATTGTGTCGTCATATGTACA
AATAACGTATCTCTAGAATCACATACAAGTATGTTATGTGGTGGTTCTCC
GTGTCCAACCATTATTTTTCTCTACCATTTATAGTACAGTATCGTAAGTT
ACAACGACGACTTTTTATGCCCCCCCGAGTATATTAGCATCCTAGGTTTC
TAGCCATTGCAACGGTAGTGGCATGCGATGCTTTGATATGTATGATGCCG
ATCGTTGCGTTTTTCACCCGGTTCAAAATGTTCTCTTGATGCCGTGAAAT
TTGGAGTATACCTACCTGTGAAATTGCCCCGCCTCCCCCCCCCCCGCGCC
CAAAAAACATGCAGGTTCTCAAGTTTTTTCGCCAGGTAAACAAGGGCTCG
TACCTGCTAAAGCCAATGGGCGGCAAAAGTGTACGCGGGTGCGGCGATTG
TCTTGTAGACACGCTCGCCTCTCTTACGCGGAAGCTACGCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig634:39929..41221+

>mRNA_P-littoralis_Contig634.12.1 ID=mRNA_P-littoralis_Contig634.12.1|Name=mRNA_P-littoralis_Contig634.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig634:39929..41221+ (Pylaiella littoralis U1_48)
ATGATTGATGTTAGCAGCGGTGACGACGGGCGCGGTGGCTCTGATCCTCG
CCTGTGCGATATTGATGGTGATTGCGACGGGCCTCTGCGTGTGAGCACCG
AAGATGCCAGCGTCAGGAAGAGCAGCGACCAGGAAGCGGAGAACCACAGG
GCAGACCTAGCAGAGATTGCTAGCATGAGGAACATGGGTCGGAGGTATTC
GGAAAGTCCGAACATCAATGAACCTCGTGAGCGCGGGTGGCTATCACCTC
CCGTCAACAGTACGGAAGTCGACGCGACGACTGAACCGCCTGCGGAGGAC
GCGGGTCAGTCTGGAGAGGTTCTCAAGTTTTTTCGCCAGGTAAACAAGGG
CTCGTACCTGCTAAAGCCAATGGGCGGCAAAAGTGTACGCGGGTGCGGCG
ATTGTCTTGTAGACACGCTCGCCTCTCTTACGCGGAAGCTACGCTCC
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