mRNA_P-littoralis_Contig633.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig633.24.1
Unique NamemRNA_P-littoralis_Contig633.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig633.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig633contigP-littoralis_Contig633:108489..109080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRF1
PFAMsDDE_1
Model size273
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.84e-06
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791321.29502-CDS-P-littoralis_Contig633:108488..1087281680791321.29502-CDS-P-littoralis_Contig633:108488..108728Pylaiella littoralis U1_48CDSP-littoralis_Contig633 108489..108728 -
1680791321.3087568-CDS-P-littoralis_Contig633:109047..1090801680791321.3087568-CDS-P-littoralis_Contig633:109047..109080Pylaiella littoralis U1_48CDSP-littoralis_Contig633 109048..109080 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig633.24.1prot_P-littoralis_Contig633.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig633 108489..109080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig633.24.1

>prot_P-littoralis_Contig633.24.1 ID=prot_P-littoralis_Contig633.24.1|Name=mRNA_P-littoralis_Contig633.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
ITSFVKGSGGPIERTRNDGSVELVAGVVTTPLPTTGVPTVQCPYCPKKFM
CTQASAIHFGMRHPQAKKDEGERLLKLLLEQSASITKMPWE
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mRNA from alignment at P-littoralis_Contig633:108489..109080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig633.24.1 ID=mRNA_P-littoralis_Contig633.24.1|Name=mRNA_P-littoralis_Contig633.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=592bp|location=Sequence derived from alignment at P-littoralis_Contig633:108489..109080- (Pylaiella littoralis U1_48)
ATTACCTCCTTCGTCAAAGGATCCGGCGGGCCGGTGAGTTTGCAAAATAA
AAGCTCGGCTGCCGCATAGTGCCTGCTGTACGGCGGAATTTTCAGTCGCG
TAGCTGCGCCGCAGACGTTGAAACATGAAAAAAAGTGCGTTTCAATCGAC
CACTGTAGTCTACAGCAGTACCACTCACACCATGATGCAAGAGGTTAGCT
TTACTTCTATTTTTCCGAATGTTTTCTCACCGCGTGCACTCCGTAGCATC
AAGTAAGTCTGAACGCTTGCGCTGCTTTGTTCTCCGTCTAACCGCTGCTA
TCCGAATGCTGTGTCACTGCTGGGTTTCTCCTTTCGATCTCGTCTGTCGC
AGATTGAGCGCACTCGGAACGATGGGTCTGTTGAGCTTGTAGCGGGTGTT
GTGACCACCCCACTACCCACCACTGGCGTACCGACTGTCCAGTGCCCCTA
CTGCCCCAAGAAGTTCATGTGCACCCAGGCATCCGCGATCCACTTCGGAA
TGCGCCACCCTCAAGCCAAGAAGGACGAGGGGGAGCGGCTTCTAAAGTTG
CTGCTCGAACAGTCAGCATCTATCACCAAGATGCCATGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig633:108489..109080-

>mRNA_P-littoralis_Contig633.24.1 ID=mRNA_P-littoralis_Contig633.24.1|Name=mRNA_P-littoralis_Contig633.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig633:108489..109080- (Pylaiella littoralis U1_48)
ATTACCTCCTTCGTCAAAGGATCCGGCGGGCCGATTGAGCGCACTCGGAA
CGATGGGTCTGTTGAGCTTGTAGCGGGTGTTGTGACCACCCCACTACCCA
CCACTGGCGTACCGACTGTCCAGTGCCCCTACTGCCCCAAGAAGTTCATG
TGCACCCAGGCATCCGCGATCCACTTCGGAATGCGCCACCCTCAAGCCAA
GAAGGACGAGGGGGAGCGGCTTCTAAAGTTGCTGCTCGAACAGTCAGCAT
CTATCACCAAGATGCCATGGGAG
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