mRNA_P-littoralis_Contig1163.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1163.7.1
Unique NamemRNA_P-littoralis_Contig1163.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1163.7.1 vs. uniprot
Match: A0A6H5L8Z0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.440e-6
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:    1 PKVAAKRFAGNSGARVRSIGGGXXXXXXXXXXXGSIEAEALGLPDYNGKIADEEYKRQQDEARKEAATRRDFTLANDLSERRSQTGKSSTTFRRRSQGG 297
            P  A KR A +SGARVR  GG             S+     GLP+   K+ +E+Y RQQ EAR+EA+ R+   +A D  ++    G      RRRS GG
Sbjct:   94 PTAATKRDARDSGARVRRTGGKSRSGRKRRKRP-SVGVTGGGLPNLESKLEEEDYYRQQGEARREASARKARAIAEDERQKAESAGNHPVDPRRRSHGG 191
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BLAST of mRNA_P-littoralis_Contig1163.7.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.810e-6
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:    1 PKVAAKRFAGNSGARVRSIGGGXXXXXXXXXXXGSIEAEALGLPDYNGKIADEEYKRQQDEARKEAATRRDFTLANDLSERRSQTGKSSTTFRRRSQGG 297
            P  A KR A +SGARVR  GG             S+     GLP+   K+ +E+Y RQQ EAR+EA+ R+   +A D  ++    G      RRRS GG
Sbjct:   94 PTAATKRDARDSGARVRRTGGKSRSGRKRRKRP-SVGVTGGGLPNLESKLEEEDYYRQQGEARREASARKARAIAEDERQKAESAGNHPVDPRRRSHGG 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1163.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8Z0_9PHAE7.440e-638.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE7.810e-638.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1163contigP-littoralis_Contig1163:46335..46680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789483.5814638-UTR-P-littoralis_Contig1163:46334..463411680789483.5814638-UTR-P-littoralis_Contig1163:46334..46341Pylaiella littoralis U1_48UTRP-littoralis_Contig1163 46335..46341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789483.5984516-CDS-P-littoralis_Contig1163:46341..466801680789483.5984516-CDS-P-littoralis_Contig1163:46341..46680Pylaiella littoralis U1_48CDSP-littoralis_Contig1163 46342..46680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1163.7.1prot_P-littoralis_Contig1163.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1163 46342..46680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1163.7.1

>prot_P-littoralis_Contig1163.7.1 ID=prot_P-littoralis_Contig1163.7.1|Name=mRNA_P-littoralis_Contig1163.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
PKVAAKRFAGNSGARVRSIGGGSGSGRKRRRKRGSIEAEALGLPDYNGKI
ADEEYKRQQDEARKEAATRRDFTLANDLSERRSQTGKSSTTFRRRSQGGK
LCPKQQLCRAMS*
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mRNA from alignment at P-littoralis_Contig1163:46335..46680-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1163.7.1 ID=mRNA_P-littoralis_Contig1163.7.1|Name=mRNA_P-littoralis_Contig1163.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=346bp|location=Sequence derived from alignment at P-littoralis_Contig1163:46335..46680- (Pylaiella littoralis U1_48)
CCAAAAGTAGCTGCAAAGCGGTTCGCAGGAAATTCTGGCGCACGTGTCCG
GAGCATAGGAGGAGGGTCAGGGTCGGGAAGGAAACGCCGAAGGAAGCGCG
GGTCGATTGAGGCAGAGGCTTTGGGGCTACCTGATTATAATGGCAAGATT
GCCGACGAGGAGTACAAGAGGCAGCAGGACGAGGCCAGGAAGGAGGCAGC
AACCCGCAGAGATTTTACATTGGCTAATGATCTAAGCGAACGACGATCGC
AGACCGGCAAGAGCAGCACAACATTCCGGCGGAGGAGTCAAGGTGGTAAG
CTTTGTCCGAAACAGCAACTTTGCCGTGCGATGAGCTAGTGACGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1163:46335..46680-

>mRNA_P-littoralis_Contig1163.7.1 ID=mRNA_P-littoralis_Contig1163.7.1|Name=mRNA_P-littoralis_Contig1163.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1163:46335..46680- (Pylaiella littoralis U1_48)
CCAAAAGTAGCTGCAAAGCGGTTCGCAGGAAATTCTGGCGCACGTGTCCG
GAGCATAGGAGGAGGGTCAGGGTCGGGAAGGAAACGCCGAAGGAAGCGCG
GGTCGATTGAGGCAGAGGCTTTGGGGCTACCTGATTATAATGGCAAGATT
GCCGACGAGGAGTACAAGAGGCAGCAGGACGAGGCCAGGAAGGAGGCAGC
AACCCGCAGAGATTTTACATTGGCTAATGATCTAAGCGAACGACGATCGC
AGACCGGCAAGAGCAGCACAACATTCCGGCGGAGGAGTCAAGGTGGTAAG
CTTTGTCCGAAACAGCAACTTTGCCGTGCGATGAGCTAG
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