mRNA_P-littoralis_Contig633.25.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig633.25.2
Unique NamemRNA_P-littoralis_Contig633.25.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig633.25.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig633contigP-littoralis_Contig633:110096..110755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size427
Hectar predicted targeting categoryother localisation
Exons2
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791320.6713014-CDS-P-littoralis_Contig633:110095..1103091680791320.6713014-CDS-P-littoralis_Contig633:110095..110309Pylaiella littoralis U1_48CDSP-littoralis_Contig633 110096..110309 +
1680791320.6822507-CDS-P-littoralis_Contig633:110544..1107531680791320.6822507-CDS-P-littoralis_Contig633:110544..110753Pylaiella littoralis U1_48CDSP-littoralis_Contig633 110545..110753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig633.25.2prot_P-littoralis_Contig633.25.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig633 110096..110753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig633.25.2

>prot_P-littoralis_Contig633.25.2 ID=prot_P-littoralis_Contig633.25.2|Name=mRNA_P-littoralis_Contig633.25.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
KPYAHHIKLAYTTCSTVLPSRTRQPAESSGSVHVHYAIARARSCFHERVD
LAEEPNAETLLLRLVQYTWEPLSATVKHLSEGGSLLLPGAAAADPRSMQR
PRPWRAWESDRFNHYSVCTTYSMWTVQTDVGGVSPAEDVRG
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mRNA from alignment at P-littoralis_Contig633:110096..110755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig633.25.2 ID=mRNA_P-littoralis_Contig633.25.2|Name=mRNA_P-littoralis_Contig633.25.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig633:110096..110755+ (Pylaiella littoralis U1_48)
AAGCCGTACGCTCACCACATAAAACTCGCCTACACCACATGTAGTACCGT
CCTACCGTCACGTACACGCCAGCCTGCTGAAAGCAGTGGGTCGGTGCACG
TTCATTACGCCATCGCAAGAGCTCGATCTTGTTTTCATGAGCGCGTCGAT
CTTGCTGAAGAGCCGAACGCCGAAACGCTGTTGTTACGATTGGTGCAATA
TACCTGGGAGCCCTGTAAGTGCCGTTGCACTAGAGAGAGATACATACGAA
CAAATACTTGCGTAACCAAACCCTTATTTCTCCACGAACACCTCCTCCTT
TGCCTCGTTCGTCCCCCCGATTGGGTCGGCCGAAACACCAGTTCGGTCCA
ATTTAGGCGATCCGTTTACGATTTTTTCCGTCTCGAACGGCGACTGACCA
CGCAAACGCCTCGCCGGCGCTCTCTCATGGCACGTTCGCCTCACGACAGT
GTCCGCCACAGTGAAGCACCTATCTGAGGGCGGTAGCCTGTTGCTGCCAG
GGGCGGCGGCAGCGGACCCGCGGAGCATGCAGCGGCCGCGGCCTTGGCGA
GCGTGGGAGAGCGATCGATTCAACCACTACTCGGTGTGTACCACCTACAG
TATGTGGACGGTACAGACAGACGTTGGGGGCGTTTCCCCAGCAGAAGACG
TGCGTGGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig633:110096..110755+

>mRNA_P-littoralis_Contig633.25.2 ID=mRNA_P-littoralis_Contig633.25.2|Name=mRNA_P-littoralis_Contig633.25.2|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig633:110096..110755+ (Pylaiella littoralis U1_48)
AAGCCGTACGCTCACCACATAAAACTCGCCTACACCACATGTAGTACCGT
CCTACCGTCACGTACACGCCAGCCTGCTGAAAGCAGTGGGTCGGTGCACG
TTCATTACGCCATCGCAAGAGCTCGATCTTGTTTTCATGAGCGCGTCGAT
CTTGCTGAAGAGCCGAACGCCGAAACGCTGTTGTTACGATTGGTGCAATA
TACCTGGGAGCCCTTGTCCGCCACAGTGAAGCACCTATCTGAGGGCGGTA
GCCTGTTGCTGCCAGGGGCGGCGGCAGCGGACCCGCGGAGCATGCAGCGG
CCGCGGCCTTGGCGAGCGTGGGAGAGCGATCGATTCAACCACTACTCGGT
GTGTACCACCTACAGTATGTGGACGGTACAGACAGACGTTGGGGGCGTTT
CCCCAGCAGAAGACGTGCGTGGG
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